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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059493 ID=TCONS_00059493|Name=TCONS_00059493|organism=Clytia hemisphaerica|type=transcript|length=582bp
AAAACCCTAATCTATTATTCTAGTCAGATTTAATCTTTCCTGACTAAATT
AGCTGCTACATCCTGTAGCGTGTGATACTACTCCTGTAGCATGTGACAGT
ACTCTCTGGTAAAGAGTtgttaattcttttttattctttttctaGTGATA
ATATCTTGAAAATCCATGTTTCGTTTTTCGACAACACGGTTGAGACAGAG
GAAATGCAACCAGCCGTCTCTTGGAATTCTCTCATAGCGACCATGGGTGG
AGCAATCGGGCTTGGTCTCGGATTCAGTTTCATCACCGGATTCGAATTtc
tattcttcttttttgacgtcattAAATTGGCATGGCAACGACGTAAACAA
AAACAAGTTCTTGGTATGTAAATTGACAAAGTATGCACAAAACGCAACAC
AGGTGTTTATTTGGGTTTTGCAAGTCAATATATGTAGGTTATAAAACACG
AAAAAGCTAAGGATTGGCAATCGACAGGGACTGGAACTTGAAAGTGTTAC
CATCTTAAAAAAGCCCATCAGGATAAAGGGATTTCTCATCCATCATTGAC
ATTTTTCTATATTGCAGTTATGTCATTTTTNN Run BLAST on NCBI transcript from alignment at scaffold_329:17331..19390+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059493 ID=TCONS_00059493|Name=TCONS_00059493|organism=Clytia hemisphaerica|type=transcript|length=2060bp|location=Sequence derived from alignment at scaffold_329:17331..19390+ (Clytia hemisphaerica)
AAAACCCTAATCTATTATTCTAGTCAGATTTAATCTTTCCTGACTAAATT
AGCTGCTACATCCTGTAGCGTGTGATACTACTCCTGTAGCATGTGACAGT
ACTCTCTGGTAAAGAGTtgttaattcttttttattctttttctaGTGATA
ATATCTTGAAAATCCATGTTTCGTTTTTCGACAACACGGTTGAGACAGAG
GAAATGCAACCAGCCGTCTCTTGGAATTCTCTCATAGGTAAatttatacc
ttatcggccaaaacttagtcggccttaattttagttggcccaaattttta
gctggccctaattttagtcaccaagccaaaatttagtcacttttgGCCGA
TAATGTAATCAATTTTCTTCGCTACGAATATTGTGTAGTTTACCTTTCAA
CAAATCAAATGATTATTTCAAAGAGACCTCTGTGTTACAGACCCAGTGGG
ACCCCAACATCACTGAAAATTCtagccaaaatttcgtccccatcCCCATT
GAGGAAAATACCCCACAGTTTCAGACCCACTGGGAAGTTGACTTTGTTTT
TACGCCCATTTGAGATTCAATGAAAAAACTGCACTGAAAACCATCCCCAG
TAGACTTTTTGACCTGGAATCAATAGGATTTCTTTCTCTATTGAGATATA
acaatacacccccttctcacaggccCACTAAGAAcctcttcccactggaa
aaattgcccAAAATGTGTTCGTTCTCACCTTTTATTGCGTCACACCCTGG
TAAGGAAATATTTTAGTACCCTTAGACTTCTTTCGGGTAATATTATGGTG
CGAATAGTGGTTTACTTAATTGTATATTGGTCATTCGCATTTAGgaacac
ctccttctcacagacccggcaGGATTGTTTCAGCCCAAACTCGATTGGGA
TTGATATTAGCCAGAagattcagtggggatagataaaatagcacaatatt
ttgcagtgaggattcgctttctaattattttcagcagggacaaaaattgg
ggttcaattttccactggggacaatattttggccaatttttccagtgggt
ctgtgagaagtgggtgtggttttgagttttgtttaagagggttttaggtt
taaaactaaTAAAGATATTGAAATGAATATAAAACAttcatgaaaattat
ttaaacgattttaaaatgtcaaaatgtaGACAAGCTTAGCTACTATAATG
GGCCATTTCTCTAATGTTCCcttatggaatttttttccaaaatctttctt
tcagcGACCATGGGTGGAGCTATCGGGCTTGGTCTCGGATTCAGTTTCAT
CACCGGATTCGAATTTCTATTCTTCTTTNATATTTTCAGCCAAAACTCGA
TTGGGATTGATattagccagaaaattcagcggGATGGataaaatagcaca
atattttgcagtgaggatttgctttataattattttcagcGAGGACAAAA
ATTGGGGTtcaattttccactggggacaatattttggccaatttttccag
tgggtctgtgagaagtgggTGTAGTTTTGGGTTTTGTTTAAGAAggtttt
aggtttaaaactagTAAAGATATTGAAATggatataaataaataaaaaca
ttcgtAAATTATTTAAACGATTCTGAAATGTCAAAATGAAGACATGTTTA
GTTACTATCATGGGTCATTTCTATAATGTTCCTttatggaattttttcaa
aatctttcttttcagCGACCATGGGTGGAGCAATCGGGCTTGGTCTCGGA
TTCAGTTTCATCACCGGATTCGAATTtctattcttcttttttgacgtcat
tAAATTGGCATGGCAACGACGTAAACAAAAACAAGTTCTTGGTATGTAAA
TTGACAAAGTATGCACAAAACGCAACACAGGTGTTTATTTGGGTTTTGCA
AGTCAATATATGTAGGTTATAAAACACGAAAAAGCTAAGGATTGGCAATC
GACAGGGACTGGAACTTGAAAGTGTTACCATCTTAAAAAAGCCCATCAGG
ATAAAGGGATTTCTCATCCATCATTGACATTTTTCTATATTGCAGTTATG
TCATTTTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059493-exon-scaffold_329-1491911889:17331..17567 | TCONS_00059493-exon-scaffold_329-1491911889:17331..17567 | Clytia hemisphaerica | exon |
| TCONS_00059493-exon-scaffold_329-1510915933:17331..17567 | TCONS_00059493-exon-scaffold_329-1510915933:17331..17567 | Clytia hemisphaerica | exon |
| TCONS_00059493-exon-scaffold_329-1575043694:17331..17567 | TCONS_00059493-exon-scaffold_329-1575043694:17331..17567 | Clytia hemisphaerica | exon |
| TCONS_00059493-exon-scaffold_329-1491911889:19046..19390 | TCONS_00059493-exon-scaffold_329-1491911889:19046..19390 | Clytia hemisphaerica | exon |
| TCONS_00059493-exon-scaffold_329-1510915933:19046..19390 | TCONS_00059493-exon-scaffold_329-1510915933:19046..19390 | Clytia hemisphaerica | exon |
| TCONS_00059493-exon-scaffold_329-1575043694:19046..19390 | TCONS_00059493-exon-scaffold_329-1575043694:19046..19390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:17331..19390 + |
Blast
The following BLAST results are available for this feature:
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