|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059499 ID=TCONS_00059499|Name=TCONS_00059499|organism=Clytia hemisphaerica|type=transcript|length=1395bp
ATTAACTTATCCTATTGTTTTAATTAAATGTAAAACAATAGCAATTAACA
AGCGTCAGCTATAAAAGCCGATGGCTTTGCCATATCGTCTTcagttcatt
ttattttattttactcgAAAAAACGCTGGTCGTTTCACTTGAAAGAGCGC
TGGTCGCCTTTCCATCAAAtatcaatcaaaaaaaatttaccaagCGCTTA
TTAACCTTATTTGGCATAATTTTGTTGACATCAGCAAAAAATGACATACA
AAACGATCTCAATGTTCTATTTGACGCTCGTCGCAGTTGTGTTGGTCCAA
GGACGTCCGCAAACTTTGGAAACTCCATCCAATAAAGTCTCAGATGGTGG
CGATACATTAATACAACAAGGACGAAATATGTTAGCTGAATTTCTGCTCA
AAGACGCTGCACTGGACACACACAAATTCAAACAAGACCATGGATGCtat
aagaacatttataaaGAGTGTAGCCACGACTCTGCATGTGGATGCCACCT
AAAATGCCTTGGAACCATGAAGAATAACAGGATTGTTAAACGTTGTATTT
CTCCAACTTATCCACTCATTCGATGATTGGTTCCTCGTGACGTAATGGTA
TGTAGGAGACTCGTTGATTGGCTCAATGTGACGTAATTGTGTGAAAGAGA
CTTGCTGATTGGCTCAATGTAAGGAAATTTCGGCAGCAGCATCATTATGA
CGtataaaaatgtataacagCAGGCATACGTCATATTTCTTGGCAAAGTT
TACCACATTAGACGATCTAAAATTCCGTCTTGCTAAAGGAAACTTCTCTT
GTGACAGATGATATTATACATGAAATAACGAACTCTGAATTGTTCATTTT
GATCTCCTGACAGCAAGGGATACGAACAAATAACACAAACATTGAAAAGA
GTGTAGGACGAACGGAAGCATGGGagatttgacaaatattgtatGTTCTT
TTGGCAAAAAGCTATAGACGAAGGGACGTGACgttattttttccgatttt
ACGCGATCAAAACTAAACCAACCAACCACCCGCACGCACGCCTCTGCGTT
TTCCTGGTGAAAACAATACCACGAGGGCGTTGGGTTTCATGAGTCGAAAC
AGAAGAACTATGACGAGAAAGACAACTAGCAAATTATTGTATGGGTTTCT
ACACCCATGTAATAGGGTGGAATTTACTGCTCATTATACAACTATTAAAG
TAGAGAGTTTTACATAATTTAATTTTTCGTtttaattttagcattttttt
tcttcctttttgttTAATTCTACTATATATTTATTTCCCTTTACATATTG
TAAATATGCtacattttctattttgatctaaaaaaagtttaagatttaaa
ttaaaagtttaataGAATCCTTATGTCCGAAGGAGAAGCAGCAAA Run BLAST on NCBI transcript from alignment at scaffold_329:99411..102236+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059499 ID=TCONS_00059499|Name=TCONS_00059499|organism=Clytia hemisphaerica|type=transcript|length=2826bp|location=Sequence derived from alignment at scaffold_329:99411..102236+ (Clytia hemisphaerica)
ATTAACTTATCCTATTGTTTTAATTAAATGTAAAACAATAGCAATTAACA
AGCGTCAGCTATAAAAGCCGATGGCTTTGCCATATCGTCTTcagttcatt
ttattttattttactcgAAAAAACGCTGGTCGTTTCACTTGAAAGAGCGC
TGGTCGCCTTTCCATCAAAtatcaatcaaaaaaaatttaccaagCGCTTA
TTAACCTTATTTGGCATAATTTTGTTGACATCAGCAAAAAATGGTATGTA
TGTATTtgatttttatatgttttttccTTTATGAAGGAACTTGTAGTTTG
ACAGATTCGGATAAGAAAAGGGTTCAAATTTTATACGATAGAGAGTGTTA
GAATCATTAATAATTCCTTATTTGGAAATTCACACTCTCCATTCTAAAGC
TAGAATCTCCTTTTAGATTGCGTTGCATTTGCAGTCTATCATATTTTGAC
AGACATAACGGTTGTTTTGGAGAATTTTCTAGCCTACCGCCCTCTTTGCT
TTccgtcaaaatatttttctaaaggttCTAGTGCCAAACACTTGACAAGC
GACGTGATTAGCTAACAATTGTTATTTTACTCCCTGAATTTTTCGCCTTT
TAAGTCAAAAATGTACATGTTATCTTTAGATTCAGGGGGTTAGCAGTTAC
GCCACCCTTAGGGTTGAAAGCATTCCAAGGTCTCTTAAATGAAAATCGGT
ATTAACGATTCGGTTTGGTTTTAAGTGCCTTATCAACAGTAACAAATATT
GTTCATTCTTTTCCAAAACCCAGACATACAAAACGATCTCAATGTTCTAT
TTGACGCTCGTCGCAGTTGTGTTGGTCCAAGGACGTCCGCAAACTTTGGA
AACTCCATCCAATAAAGTCTCAGATGGTGGCGATACATTAATACAACAAG
GACGAAATATGTTAGCTGAATTTCTGGTAAGTTCCTGACCTCATTTTCTT
TCCTCTCTTACGCTGACTTGAATGCAACGCCGTTTGATATCATTCTACAG
TGAAGTGGTAACTTCAACAAGTTTTCTGCTCGCTTCAGTTAAAAATGTCT
TATAAGCATCACTccgtaactcgaaatttccttaactcgaacaaatttgt
gttccccatgcgtgttcgagttatggagactccatttGTAACATGTTAAT
ATACATGGATGTACCAAGGATGTAACTGTGACGTTTATTTGCGCCATGCT
TTGCAATCTGGTAAATACTAGCGTTCTTCTTAAGCGCACTTCTAAAGTCC
GCTAGAATACACGCCCCTAAATTTATCAGGACCTTCTAAAACAATGCGTG
ACCTCGCTGGCGGCGAAAACCGAAAATGTTTATACATCAAACTTCGCTAC
CTATAATATGCTAATTGAGAAAATGGGGTCGATTATTTAGTCATTTTCAT
ATCAGATTAGcattttctttttcctctttaCGCCCTTACAAAACTAGAAA
CTAATTCAGTTATACGCGTTTTCaaagaaacataaaaattaacatGATTG
GAAcactgtttttttcttcttaacggtgtgtaatattttctttttgatag
gGGCAATTATATCACCTACGCACTTTCACTTAAAATATGTTTCTTAGTCA
GCCCTTTGTTCTTAAATGAGTTGTAACCGGTTACTAGGTTTAAAACACAT
AGACGTTTTCTTCCGGCAATCTTTCCTTACACAAGGGCTCTCGTGCATTT
TTGAATGCACCTTCCATTTGCACAAAACAACCACCCACCCTCCCACTATC
ATTCAAACCACTTTGataattttaatgttttctATACATTGACCAGTTga
attcaatttcttttgttacCCTTTTAGCTCAAAGACGCTGCACTGGACAC
ACACAAATTCAAACAAGACCATGGATGCtataagaacatttataaaGAGT
GTAGCCACGACTCTGCATGTGGATGCCACCTAAAATGCCTTGGAACCATG
AAGAATAACAGGATTGTTAAACGTTGTATTTCTCCAACTTATCCACTCAT
TCGATGATTGGTTCCTCGTGACGTAATGGTATGTAGGAGACTCGTTGATT
GGCTCAATGTGACGTAATTGTGTGAAAGAGACTTGCTGATTGGCTCAATG
TAAGGAAATTTCGGCAGCAGCATCATTATGACGtataaaaatgtataaca
gCAGGCATACGTCATATTTCTTGGCAAAGTTTACCACATTAGACGATCTA
AAATTCCGTCTTGCTAAAGGAAACTTCTCTTGTGACAGATGATATTATAC
ATGAAATAACGAACTCTGAATTGTTCATTTTGATCTCCTGACAGCAAGGG
ATACGAACAAATAACACAAACATTGAAAAGAGTGTAGGACGAACGGAAGC
ATGGGagatttgacaaatattgtatGTTCTTTTGGCAAAAAGCTATAGAC
GAAGGGACGTGACgttattttttccgattttACGCGATCAAAACTAAACC
AACCAACCACCCGCACGCACGCCTCTGCGTTTTCCTGGTGAAAACAATAC
CACGAGGGCGTTGGGTTTCATGAGTCGAAACAGAAGAACTATGACGAGAA
AGACAACTAGCAAATTATTGTATGGGTTTCTACACCCATGTAATAGGGTG
GAATTTACTGCTCATTATACAACTATTAAAGTAGAGAGTTTTACATAATT
TAATTTTTCGTtttaattttagcattttttttcttcctttttgttTAATT
CTACTATATATTTATTTCCCTTTACATATTGTAAATATGCtacattttct
attttgatctaaaaaaagtttaagatttaaattaaaagtttaataGAATC
CTTATGTCCGAAGGAGAAGCAGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059499-exon-scaffold_329-1491911889:99411..99653 | TCONS_00059499-exon-scaffold_329-1491911889:99411..99653 | Clytia hemisphaerica | exon |
| TCONS_00059499-exon-scaffold_329-1510915933:99411..99653 | TCONS_00059499-exon-scaffold_329-1510915933:99411..99653 | Clytia hemisphaerica | exon |
| TCONS_00059499-exon-scaffold_329-1575043694:99411..99653 | TCONS_00059499-exon-scaffold_329-1575043694:99411..99653 | Clytia hemisphaerica | exon |
| TCONS_00059499-exon-scaffold_329-1491911889:100184..100336 | TCONS_00059499-exon-scaffold_329-1491911889:100184..100336 | Clytia hemisphaerica | exon |
| TCONS_00059499-exon-scaffold_329-1510915933:100184..100336 | TCONS_00059499-exon-scaffold_329-1510915933:100184..100336 | Clytia hemisphaerica | exon |
| TCONS_00059499-exon-scaffold_329-1575043694:100184..100336 | TCONS_00059499-exon-scaffold_329-1575043694:100184..100336 | Clytia hemisphaerica | exon |
| TCONS_00059499-exon-scaffold_329-1491911889:101238..102236 | TCONS_00059499-exon-scaffold_329-1491911889:101238..102236 | Clytia hemisphaerica | exon |
| TCONS_00059499-exon-scaffold_329-1510915933:101238..102236 | TCONS_00059499-exon-scaffold_329-1510915933:101238..102236 | Clytia hemisphaerica | exon |
| TCONS_00059499-exon-scaffold_329-1575043694:101238..102236 | TCONS_00059499-exon-scaffold_329-1575043694:101238..102236 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:99411..102236 + |
Blast
The following BLAST results are available for this feature:
|
