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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059513 ID=TCONS_00059513|Name=TCONS_00059513|organism=Clytia hemisphaerica|type=transcript|length=3375bpRun BLAST on NCBI protein sequence of TCONS_00059513-protein >TCONS_00059513-protein ID=TCONS_00059513-protein|Name=TCONS_00059513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=999bp XDENENPQTAYPEISESTTWGILGAHSTIKEKINSLSAVVGEDSENWDVNRun BLAST on NCBI transcript from alignment at scaffold_329:304527..317687+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059513 ID=TCONS_00059513|Name=TCONS_00059513|organism=Clytia hemisphaerica|type=transcript|length=13161bp|location=Sequence derived from alignment at scaffold_329:304527..317687+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_329:304527..317687+ >TCONS_00059513 ID=TCONS_00059513|Name=TCONS_00059513|organism=Clytia hemisphaerica|type=CDS|length=45000bp|location=Sequence derived from alignment at scaffold_329:304527..317687+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059513 vs. Swiss-Prot (Human)
Match: ZCHC7 (Zinc finger CCHC domain-containing protein 7 OS=Homo sapiens GN=ZCCHC7 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 9.932e-18 Identity = 65/218 (29.82%), Postives = 97/218 (44.50%), Query Frame = 2
Query: 56 TWGILGAHSTIKEKINSLSAV-------VGEDSENWDVNEQDLNEK-GNKK---HATKRYYLEDELPNIICFNCGLKGHIGRDCTQERKLPTCSLCGTDGHVRRHCPNEFCFNCMETGHRARDCTEERKKPRHLLRCKRCRNVGHLKQDCPEYWRQYHVTIESGPIIMLSIXXXXXXXXXXXXRYCFNCASTKHFGEECKYDRLNKGPVCGQFVVNYD 676
+W +LG K+ L+ V GED NW ++++D+ + N + T+RYY ++ NIIC NC +GH+ ++C RK+ C LC GH+ CP C C C + +C RC +GH C E WRQYH+T + GP S+ + YC++CA H+G EC + F+ YD
Sbjct: 175 SWMLLGCEVDDKDDDILLNLVGCENSVTEGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANK--NIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSWDK---QCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALA-----YCYHCAQKGHYGHECPEREVYDPSPVSPFICYYD 382 The following BLAST results are available for this feature:
BLAST of TCONS_00059513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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