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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059519 ID=TCONS_00059519|Name=TCONS_00059519|organism=Clytia hemisphaerica|type=transcript|length=2248bp
AGAGCGTGGAAACGAGGCTTGAACTATAATGACATGACAACGGATTTGTA
AAAAGAACCAAATGGAGGACTGCAGCTATGTCTTATTTTCGATATAAATT
TTAATCGAATCGCTATGATAGTAAGGTACCGATTACAATATAGGATAAAT
TTTTCGAGTGAAGATATTTTCGTCATATCCCATTTTTTACTCGAAAAATT
CTTGTCATAGCATAAAGTGTACAAAATATGATGTATTTTCATGTTGACAA
TAAAAGTTTGTATTTCATTagatatttcgaaaattttgctGGATGTCGGA
AtccccaaaattgaaaaatataataacaCCATGACACTGGTTTGTAGAGG
TTATAATACCAGAAATCagtgtcataatatattggcacttttttggctaa
tttaaaatttttcgaaaattgaagttcgagcgagaatgtcaatttttagg
ccttcaacttgatttcatcgagtatttcgatctgggagggatttattggt
ttctaggctatatttcaagccctactggactatttttgaacttttggatc
ctcagatcctatgttcgtaagtcttaagtctagtgttaaaactcagagtt
aaagctctacccttcgaacctactttagagcacttacaaatcgattgtgg
tttcaaaacaccccggtgaatttcccttttgtgccaagtattttgccCCT
GATTGAGAATACTGacaaaaattaaagttaaaTACAGTCACCCTCTGATt
tcaaaataccgttttcccttctcttcgatgacgtcatttagggcccaaat
gacgtcataaaacattagatttggcatttttttagttttcaaccATTTTA
AGTGGTAATTTTTCGTTGTTTGGGCTTACAAAACAGATCTATTTACCctc
ccaccatccaaagggttTATGATGCGTTAAACTTATCTACTTCTCGGCGG
CTGCGACGTGACGTGCGACGGATAGTATCGTATTATAAATAAAACTACAA
ACCCTTTCTACCAAGGTAAATGAAGGGTAATGTCTGGGGTTTGAGAAGTA
AACCCTACCGGATATGAAATTTTTGGTAAGTTAGGGACCCTATCATAAGG
AAACATTGTGTTGTTCATCCACAAAAGGGTCAAAAATtactaaaagtaga
cgaaaaattgaaaaaacttctaATCTTCTAattaaaatatgtcaaaaaat
aaccaaaagtcgaccctgtctGATACACATCTCGAAAATTAGTAAGTTTG
GGACCCTGTTACATATTTTACAGCCAAAAAAGTGACCATGTCAAGAGGCA
CGTTcccatacccaattttgcctaagtacctccCTCCGAGATAATGCAAC
TCTCGCTTTTCGTTTAGTTATTTTTTCAGActttcaagtttttatttttt
gctattttaccACCATTGCTTTAttgcttctttttttatcgcttttagtc
ctgctaagggttacaaaaaggGGAACAATCTGGAAAGAAATACCCATTCC
TTCCCTTTTGAAATTACTTGATAAATAATCTTCATAAGTCGGCAAATCTT
TTTTCGGATTgaaatactttaatcggattaattttcgcaagaTTAATTTT
CATGAGCgagaaaaaccgcgaaattttctgaatttaatttcgcgtgtCAG
AGTTAGAGAAATTTCGCttggatttaatttcgtgagTAAGCCTGGAAACA
GATTAAACCATTTTTTGCCATGTAGACTTTGGACTGGTTTCTTTGCCGAA
AAtgcgattttaaaaatttcgtggtggatttattttttcaaagtcaggaa
tctcacgcgttttTGCGAgttttgcgaaatttaatcttgcaaaagttaat
ccgattaaagtaccAATATCATAAATAGAAAATGACACTTTTCATGGCAG
ATTGTTGTTTCATTCTATTCTGCAAGATGCGCAATCattctttgattttt
gaagGCTTTTTGAGATGCTTTCAGTAAGTGTTTGTAAACAATATTCATTG
CAACCAGTTTGGATTTCACAAACGAAGTTATGTGATTCATCACAGTCGAC
CAGATCAAAACAGCCTGTTGTTTGTTCGGATGGGAAACGAACCACGACAC
ATCCTTCACTTCCAAGAGGTGGTTGTCTTCCATCACACCAACTTCGATAA
GCTGAATTGTCATTATCAATCCATTGGAATTTTTTCTTGCTCAAATTGTT
AATAAGACCAAGCCAAAAAGtgcttaaaaaacaaaaagaattagaTTT Run BLAST on NCBI transcript from alignment at scaffold_329:391318..393634+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059519 ID=TCONS_00059519|Name=TCONS_00059519|organism=Clytia hemisphaerica|type=transcript|length=2317bp|location=Sequence derived from alignment at scaffold_329:391318..393634+ (Clytia hemisphaerica)
AGAGCGTGGAAACGAGGCTTGAACTATAATGACATAACAACGGGTTTGTA
AAAAGAACCAAATGGAGGACTGCAGCTATGTNAAGGCTTGAACTATAATG
ACATGACAACGGATTTGTAAAAAGAACCAAATGGAGGACTGCAGCTATGT
CTTATTTTCGATATAAATTTTAATCGAATCGCTATGATAGTAAGGTACCG
ATTACAATATAGGATAAATTTTTCGAGTGAAGATATTTTCGTCATATCCC
ATTTTTTACTCGAAAAATTCTTGTCATAGCATAAAGTGTACAAAATATGA
TGTATTTTCATGTTGACAATAAAAGTTTGTATTTCATTagatatttcgaa
aattttgctGGATGTCGGAAtccccaaaattgaaaaatataataacaCCA
TGACACTGGTTTGTAGAGGTTATAATACCAGAAATCagtgtcataatata
ttggcacttttttggctaatttaaaatttttcgaaaattgaagttcgagc
gagaatgtcaatttttaggccttcaacttgatttcatcgagtatttcgat
ctgggagggatttattggtttctaggctatatttcaagccctactggact
atttttgaacttttggatcctcagatcctatgttcgtaagtcttaagtct
agtgttaaaactcagagttaaagctctacccttcgaacctactttagagc
acttacaaatcgattgtggtttcaaaacaccccggtgaatttcccttttg
tgccaagtattttgccCCTGATTGAGAATACTGacaaaaattaaagttaa
aTACAGTCACCCTCTGATttcaaaataccgttttcccttctcttcgatga
cgtcatttagggcccaaatgacgtcataaaacattagatttggcattttt
ttagttttcaaccATTTTAAGTGGTAATTTTTCGTTGTTTGGGCTTACAA
AACAGATCTATTTACCctcccaccatccaaagggttTATGATGCGTTAAA
CTTATCTACTTCTCGGCGGCTGCGACGTGACGTGCGACGGATAGTATCGT
ATTATAAATAAAACTACAAACCCTTTCTACCAAGGTAAATGAAGGGTAAT
GTCTGGGGTTTGAGAAGTAAACCCTACCGGATATGAAATTTTTGGTAAGT
TAGGGACCCTATCATAAGGAAACATTGTGTTGTTCATCCACAAAAGGGTC
AAAAATtactaaaagtagacgaaaaattgaaaaaacttctaATCTTCTAa
ttaaaatatgtcaaaaaataaccaaaagtcgaccctgtctGATACACATC
TCGAAAATTAGTAAGTTTGGGACCCTGTTACATATTTTACAGCCAAAAAA
GTGACCATGTCAAGAGGCACGTTcccatacccaattttgcctaagtacct
ccCTCCGAGATAATGCAACTCTCGCTTTTCGTTTAGTTATTTTTTCAGAc
tttcaagtttttattttttgctattttaccACCATTGCTTTAttgcttct
ttttttatcgcttttagtcctgctaagggttacaaaaaggGGAACAATCT
GGAAAGAAATACCCATTCCTTCCCTTTTGAAATTACTTGATAAATAATCT
TCATAAGTCGGCAAATCTTTTTTCGGATTgaaatactttaatcggattaa
ttttcgcaagaTTAATTTTCATGAGCgagaaaaaccgcgaaattttctga
atttaatttcgcgtgtCAGAGTTAGAGAAATTTCGCttggatttaatttc
gtgagTAAGCCTGGAAACAGATTAAACCATTTTTTGCCATGTAGACTTTG
GACTGGTTTCTTTGCCGAAAAtgcgattttaaaaatttcgtggtggattt
attttttcaaagtcaggaatctcacgcgttttTGCGAgttttgcgaaatt
taatcttgcaaaagttaatccgattaaagtaccAATATCATAAATAGAAA
ATGACACTTTTCATGGCAGATTGTTGTTTCATTCTATTCTGCAAGATGCG
CAATCattctttgatttttgaagGCTTTTTGAGATGCTTTCAGTAAGTGT
TTGTAAACAATATTCATTGCAACCAGTTTGGATTTCACAAACGAAGTTAT
GTGATTCATCACAGTCGACCAGATCAAAACAGCCTGTTGTTTGTTCGGAT
GGGAAACGAACCACGACACATCCTTCACTTCCAAGAGGTGGTTGTCTTCC
ATCACACCAACTTCGATAAGCTGAATTGTCATTATCAATCCATTGGAATT
TTTTCTTGCTCAAATTGTTAATAAGACCAAGCCAAAAAGtgcttaaaaaa
caaaaagaattagaTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059519-exon-scaffold_329-1491911889:391318..391350 | TCONS_00059519-exon-scaffold_329-1491911889:391318..391350 | Clytia hemisphaerica | exon |
| TCONS_00059519-exon-scaffold_329-1510915933:391318..391350 | TCONS_00059519-exon-scaffold_329-1510915933:391318..391350 | Clytia hemisphaerica | exon |
| TCONS_00059519-exon-scaffold_329-1575043694:391318..391350 | TCONS_00059519-exon-scaffold_329-1575043694:391318..391350 | Clytia hemisphaerica | exon |
| TCONS_00059519-exon-scaffold_329-1491911889:391420..393634 | TCONS_00059519-exon-scaffold_329-1491911889:391420..393634 | Clytia hemisphaerica | exon |
| TCONS_00059519-exon-scaffold_329-1510915933:391420..393634 | TCONS_00059519-exon-scaffold_329-1510915933:391420..393634 | Clytia hemisphaerica | exon |
| TCONS_00059519-exon-scaffold_329-1575043694:391420..393634 | TCONS_00059519-exon-scaffold_329-1575043694:391420..393634 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:391318..393634 + |
Blast
The following BLAST results are available for this feature:
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