|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059551 ID=TCONS_00059551|Name=TCONS_00059551|organism=Clytia hemisphaerica|type=transcript|length=1786bp
ACCTCCGGTGATGGTGACGGTGATCGTCTGTCGTCgtcaatttcaaaatt
atacTCTTCGCCGTTGATTTTACGATGGCTCAATTTATTCATTCGATCAT
GATTTGATTCTATCAGCGGTTTGGCAATTAATTCTGTCGTAGGTTTGTTA
CTCGATTCTGTCGTCGGTTTGTTACTCGATTCTGTCGTCGGTTTGGCAAT
CAATTCTGCCATCGGTTTGGCAATCGATTCTGTCGTCGGTTTGTTAATCA
ATTCTGCCATCGGTTTGGCAATCGATTCTGTCGTCGGTTTGGCAATCGAT
TCTGTCGGCGTTTTGGCAATCGGTTCTGTTGGTGCTTTTTCAATCGAATC
TGTCGAATCGTCGAAGTCGCCATGTTTAGGTACTGTTATTGTTTCACTTG
TTTTAAACTCCTTCGtagcttttttcaaaatagatctTAGCTTTGGTTTA
GGTGATGATATCTCTAATGGAGGCTCCTCTGCAAGATCAATGACAGGTTC
GTCTGTTGTAGGGGATGTGGGTCGGTAAATGTCTTTCAACTCCTCTCTAC
TTTTCTTTGGTCCAAATACTCCAAAGCCTAACGGTGATGCATGACTTTTA
TCTGGGGTATTTGTGTTTTTAAGCCATGGCGGGGGAGTTTTTGATGGAGT
TTGTTCTGGAGCTTGTATTTGGGAGGCATCATGCCTGATATCTTGAATAT
CCCTACCTTTATTAAACCAAGGCGGGGGAGTTTTTGCTGGAGTTTGCTCT
GGAGTTTGTATTCGAGAGACATTATGCCTGATTTCTTGAATATCCCTGCC
TTTATTAAACCAAGGCGGGGGACTTTGGAGTTGAGATTGTTCTGAGGTTA
ACGTTTCGGTGCTAGGAATTGATAATGATAAATCACTCTTACGAGGTGCC
ACGGAGTCCCATGGATACTGCACTACAGCTTTTTCTTTTGGTGGAggatt
ttgaacttttgaaacaTTGCGAGGTGGTGAATGCGGTGGACTCGTTAAAT
CAATCTTTGAAGGGTTTTGGCTTTGAGGTGGACGAAGAAGTGGATGACCA
GGAGCTGACGGCCGTACGATTGGTGCATTTTGACGCATCCTTGGGTTTGG
ATTTGGTATAATTGGACTCCTTATCATATTTGGAGACATAACAGGAGGTC
CCATAAATGGACGTGGTGGGGCGCCGACAAATCTAGGAGGAAAGCGGTTG
GGTATAATGTAGGGTTGCGGAGGGAAAGCGTGTGTGACAGTGTTCGTAGC
ACCATGAAAGAAAGCCATTGTTACATTTACATTATTCGGCTGTTGAAGAA
ATGAATTTACATTTGAAGCATGTCTATTAGAATCACCGCGATATCTACCT
CTGCGTTTATTTGTAAGACGTATAGTTCTGTATCTACCACCTCCTTTTTT
CACTCTAACACGATGTACATAGTCATTATCATCAGAGTCCCCCGATCGGG
AGGGAGATCGTGACGGGGATCTCGACAATGATCTTGAGGATCTTGAACAT
CTTGAGGACCTTGGTGATCTTGGTGATCCTGGAGTCCTGCTTGGCGATCT
TGGAGACCTTGGCGATCTTGGAGATCTTGAGGATCTTGAGGATCTTGAGG
ACCTTGGCGATCTTGGCGATTTTGAGGATATTGACAATCTTGAAGATCTT
GATGATCTGGACGAGATAGATTCGTGATCAGAATCATCATTTTTTGTAAG
GTCTTGTACCACTGGTTGTCTGTAAGGATCAGTTGTATTaggcttcattt
ttcatttttgttattattaatttcatctttatttct Run BLAST on NCBI transcript from alignment at scaffold_329:643229..645179+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059551 ID=TCONS_00059551|Name=TCONS_00059551|organism=Clytia hemisphaerica|type=transcript|length=1951bp|location=Sequence derived from alignment at scaffold_329:643229..645179+ (Clytia hemisphaerica)
ACCTCCGGTGATGGTGACGGTGATCGTCTGTCGTCgtcaatttcaaaatt
atacTCTTCGCCGTTGATTTTACGATGGCTCAATTTATTCATTCGATCAT
GATTTGATTCTATCAGCGGTTTGGCAATTAATTCTGTCGTAGGTTTGTTA
CTCGATTCTGTCGTCGGTTTGGCAATCGATTCTGTCGTCGGTTTGGCAAT
CAATTCTATCGTCGGTTTGGCAATCAATTCTGTCGTAGGTTTGTTACTCG
ATTCTGTCGTCGGTTTGGCAATCAATTCTGCCATCGGTTTGGCAATCGAT
TCTGTCGTCGGTTTGTTAATCAATTCTGCCATCGGTTTGGCAATCGATTC
TGTCGTCGGTTTGGCAATCGATTCTGTCGGCGTTTTGGCAATCGGTTCTG
TTGGTGCTTTTTCAATCGAATCTGTCGAATCGTCGAAGTCGCCATGTTTA
GGTACTGTTATTGTTTCACTTGTTTTAAACTCCTTCGtagcttttttcaa
aatagatctTAGCTTTGGTTTAGGTGATGATATCTCTAATGGAGGCTCCT
CTGCAAGATCAATGACAGGTTCGTCTGTTGTAGGGGATGTGGGTCGGTAA
ATGTCTTTCAACTCCTCTCTACTTTTCTTTGGTCCAAATACTCCAAAGCC
TAACGGTGATGCATGACTTTTATCTGGGGTATTTGTGTTTTTAAGCCATG
GCGGGGGAGTTTTTGATGGAGTTTGTTCTGGAGCTTGTATTTGGGAGGCA
TCATGCCTGATATCTTGAATATCCCTACCTTTATTAAACCAAGGCGGGAG
AGCTTTTGCTTGAGTTTGTTCCGGAGTTTTTATTTGAGAGGTATCATGTC
TGATATCTTGAATATCCCTGCCATTATTAAACCAAGGCGGGGGAGTTTTT
GCTGGAGTTTGCTCTGGAGTTTGTATTCGAGAGACATTATGCCTGATTTC
TTGAATATCCCTGCCTTTATTAAACCAAGGCGGGGGACTTTGGAGTTGAG
ATTGTTCTGAGGTTAACGTTTCGGTGCTAGGAATTGATAATGATAAATCA
CTCTTACGAGGTGCCACGGAGTCCCATGGATACTGCACTACAGCTTTTTC
TTTTGGTGGAggattttgaacttttgaaacaTTGCGAGGTGGTGAATGCG
GTGGACTCGTTAAATCAATCTTTGAAGGGTTTTGGCTTTGAGGTGGACGA
AGAAGTGGATGACCAGGAGCTGACGGCCGTACGATTGGTGCATTTTGACG
CATCCTTGGGTTTGGATTTGGTATAATTGGACTCCTTATCATATTTGGAG
ACATAACAGGAGGTCCCATAAATGGACGTGGTGGGGCGCCGACAAATCTA
GGAGGAAAGCGGTTGGGTATAATGTAGGGTTGCGGAGGGAAAGCGTGTGT
GACAGTGTTCGTAGCACCATGAAAGAAAGCCATTGTTACATTTACATTAT
TCGGCTGTTGAAGAAATGAATTTACATTTGAAGCATGTCTATTAGAATCA
CCGCGATATCTACCTCTGCGTTTATTTGTAAGACGTATAGTTCTGTATCT
ACCACCTCCTTTTTTCACTCTAACACGATGTACATAGTCATTATCATCAG
AGTCCCCCGATCGGGAGGGAGATCGTGACGGGGATCTCGACAATGATCTT
GAGGATCTTGAACATCTTGAGGACCTTGGTGATCTTGGTGATCCTGGAGT
CCTGCTTGGCGATCTTGGAGACCTTGGCGATCTTGGAGATCTTGAGGATC
TTGAGGATCTTGAGGACCTTGGCGATCTTGGCGATTTTGAGGATATTGAC
AATCTTGAAGATCTTGATGATCTGGACGAGATAGATTCGTGATCAGAATC
ATCATTTTTTGTAAGGTCTTGTACCACTGGTTGTCTGTAAGGATCAGTTG
TATTaggcttcatttttcatttttgttattattaatttcatctttatttc
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059551-exon-scaffold_329-1491911889:643229..643394 | TCONS_00059551-exon-scaffold_329-1491911889:643229..643394 | Clytia hemisphaerica | exon |
| TCONS_00059551-exon-scaffold_329-1510915933:643229..643394 | TCONS_00059551-exon-scaffold_329-1510915933:643229..643394 | Clytia hemisphaerica | exon |
| TCONS_00059551-exon-scaffold_329-1575043694:643229..643394 | TCONS_00059551-exon-scaffold_329-1575043694:643229..643394 | Clytia hemisphaerica | exon |
| TCONS_00059551-exon-scaffold_329-1491911889:643467..644021 | TCONS_00059551-exon-scaffold_329-1491911889:643467..644021 | Clytia hemisphaerica | exon |
| TCONS_00059551-exon-scaffold_329-1510915933:643467..644021 | TCONS_00059551-exon-scaffold_329-1510915933:643467..644021 | Clytia hemisphaerica | exon |
| TCONS_00059551-exon-scaffold_329-1575043694:643467..644021 | TCONS_00059551-exon-scaffold_329-1575043694:643467..644021 | Clytia hemisphaerica | exon |
| TCONS_00059551-exon-scaffold_329-1491911889:644115..645179 | TCONS_00059551-exon-scaffold_329-1491911889:644115..645179 | Clytia hemisphaerica | exon |
| TCONS_00059551-exon-scaffold_329-1510915933:644115..645179 | TCONS_00059551-exon-scaffold_329-1510915933:644115..645179 | Clytia hemisphaerica | exon |
| TCONS_00059551-exon-scaffold_329-1575043694:644115..645179 | TCONS_00059551-exon-scaffold_329-1575043694:644115..645179 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:643229..645179 + |
Blast
The following BLAST results are available for this feature:
|
