Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059554 ID=TCONS_00059554|Name=TCONS_00059554|organism=Clytia hemisphaerica|type=transcript|length=320bp AAGCAAAATCGAAAGCAAACAATAAAACTTCATCGTCTGTCGTAAGACTG GTGTATTCCAAACAATCATACAACAATTACCGAAAAGAAGCTGAACAGTT GTTAAATCAATTACCATTCCCTGCTCGTTACGAACTAGTCGATGATGACA CATCACAAAACGAAAGTCTTGATGAAGATATGGATTTGATAGCTGATCTC TTGGATGCATACGATTTAGAATCTACTTCAATAACATCCAATATTTCTAA TTTTAATGACCAAGACGCTGAAGCTCTGAGAGATTACACCTCTTCCTTGC TTGCAATGATGATATTAATT Run BLAST on NCBI protein sequence of TCONS_00059554-protein >TCONS_00059554-protein ID=TCONS_00059554-protein|Name=TCONS_00059554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
AKSKANNKTSSSVVRLVYSKQSYNNYRKEAEQLLNQLPFPARYELVDDDT SQNESLDEDMDLIADLLDAYDLESTSITSNISNFNDQDAEALRDYTSSLL AMMILI Run BLAST on NCBI transcript from alignment at scaffold_329:721034..722535+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059554 ID=TCONS_00059554|Name=TCONS_00059554|organism=Clytia hemisphaerica|type=transcript|length=1502bp|location=Sequence derived from alignment at scaffold_329:721034..722535+ (Clytia hemisphaerica) AAGCAAAATCGAAAGCAAACAATAAAACTTCATCGTCTGTCGTAAGGTAC
GCAAGGTAAACATTTCCTTCGAAAAAAACTTGCCTGAAAATTCATCTCTT
TGAACTCAACGACCAAGATAGCTTAAATCTTAAGCTTTCTTGGCTCAAGC
AAAAAGCGAAGATATCCAATGCTATGAGAAAAGTAATATTTGATAAGGAG
GGGTTTATTCAGTTTAACTGTTTATTGGAAAAATAGATTAACGACCAAGA
TAGATTTAGATCTTAAGCTTTCTTGGCtcaagcaaaaaagtgaaaaatgc
ttCCAATGCTAAAAATGATTAtgagaaaatcaatatttgatgAGGAGGGG
TTGATTCAGTTTAACTGTTTATTGGAAAAATAGattatttatattttgat
tGCCTTCATCTTCAGACTGGTGTATTCCAAACAATCATACAACAATTACC
GAAAAGAAGCTGAACAGTTGTTAAATCAATTACCATTCCCTGCTCGTTAC
GAACTAGTCGATGATGACACATCACAAAACGAAAGTCTTGATGAAGATAT
GGATTTGATAGCTGATCTCTTGGATGCATACGATTTAGAATCTACTTCAA
TAACATCCAATATTTCTAATTTTAATGACCAAGACGCTGAAGCTCTGAGA
GAATATCtggaaaaattgaaacagaatTTATGATGAGTTCTTGAACCTTC
AATAATTAGTTCaaacagtttttttgttttgtttttcgctACCATTTCTA
ATTTTAATGACCAAGACGCAGAAACTCTGTGAGAGAATATCtggaaaaat
tgaaacagaatCCATGATGAGGTTCTGCTGGTTGAAAGCTTTCAAATACA
GTTGTCTCTCTCTaaatcgatcttcaagggactaaAAACtgtattcgaat
tagagaaagtttaGTAATGAAAATCACTTctcagctgaggggaccaatat
ttagttcgaattatagaaagaatcgaataatagagattcgaattagaaag
agttGACTTTATTACTTTTGTTGTAACCTTTCAATATTcgggattttcaa
aaaattagtaTTTGCATGAATACGTCTGTGTCTTTTGCATTAAGggaatt
taaaagttttcaaaattaaaagttcTAATTAAAGAATCTTTctgaacatt
taaaaaaagaaatgaaatcttGACTTAGCTTAGGGATTCAGAATTTTTAT
TTANTCTTTCTGAACATTTTAAAAAGGAAATCAAATCTTGACTTAGCTTA
GgggttcaaaatttttatttaaaattaacattttaatTAATTCCTCTTAA
AAGAATACTTATAATTTTAGTCACTTTTACTTAGGTAATGTTTTTAATTG
TCAATATTTATACAATGATTTTTAATTATAAATAATTCGTTTGATAGTTG
ATGTTTATGCAGTAGTCCGTTAgcttttttgaattgaaaaaataatatta
agATTTGAACGTAACTTACACCTCTTCCTTGCTTGCAATGATGATATTAA
TT Coding sequence (CDS) from alignment at scaffold_329:721034..722535+ >TCONS_00059554 ID=TCONS_00059554|Name=TCONS_00059554|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_329:721034..722535+ (Clytia hemisphaerica) GCAAAATCGAAAGCAAACAATAAAACTTCATCGTCTGTCGTAAGACTGGT GTATTCCAAACAATCATACAACAATTACCGAAAAGAAGCTGAACAGTTGT TAAATCAATTACCATTCCCTGCTCGTTACGAACTAGTCGATGATGACACA TCACAAAACGAAAGTCTTGATGAAGATATGGATTTGATAGCTGATCTCTT GGATGCATACGATTTAGAATCTACTTCAATAACATCCAATATTTCTAATT TTAATGACCAAGACGCTGAAGCTCTGAGAGATTACACCTCTTCCTTGCTT GCAATGATGATATTAATTGCAAAATCGAAAGCAAACAATAAAACTTCATC GTCTGTCGTAAGACTGGTGTATTCCAAACAATCATACAACAATTACCGAA AAGAAGCTGAACAGTTGTTAAATCAATTACCATTCCCTGCTCGTTACGAA CTAGTCGATGATGACACATCACAAAACGAAAGTCTTGATGAAGATATGGA TTTGATAGCTGATCTCTTGGATGCATACGATTTAGAATCTACTTCAATAA CATCCAATATTTCTAATTTTAATGACCAAGACGCTGAAGCTCTGAGAGAT TACACCTCTTCCTTGCTTGCAATGATGATATTAATTGCAAAATCGAAAGC AAACAATAAAACTTCATCGTCTGTCGTAAGACTGGTGTATTCCAAACAAT CATACAACAATTACCGAAAAGAAGCTGAACAGTTGTTAAATCAATTACCA TTCCCTGCTCGTTACGAACTAGTCGATGATGACACATCACAAAACGAAAG TCTTGATGAAGATATGGATTTGATAGCTGATCTCTTGGATGCATACGATT TAGAATCTACTTCAATAACATCCAATATTTCTAATTTTAATGACCAAGAC GCTGAAGCTCTGAGAGATTACACCTCTTCCTTGCTTGCAATGATGATATT AATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059554-exon-scaffold_329-1491911889:721034..721079 | TCONS_00059554-exon-scaffold_329-1491911889:721034..721079 | Clytia hemisphaerica | exon |
TCONS_00059554-exon-scaffold_329-1510915933:721034..721079 | TCONS_00059554-exon-scaffold_329-1510915933:721034..721079 | Clytia hemisphaerica | exon |
TCONS_00059554-exon-scaffold_329-1575043694:721034..721079 | TCONS_00059554-exon-scaffold_329-1575043694:721034..721079 | Clytia hemisphaerica | exon |
TCONS_00059554-exon-scaffold_329-1491911889:721449..721685 | TCONS_00059554-exon-scaffold_329-1491911889:721449..721685 | Clytia hemisphaerica | exon |
TCONS_00059554-exon-scaffold_329-1510915933:721449..721685 | TCONS_00059554-exon-scaffold_329-1510915933:721449..721685 | Clytia hemisphaerica | exon |
TCONS_00059554-exon-scaffold_329-1575043694:721449..721685 | TCONS_00059554-exon-scaffold_329-1575043694:721449..721685 | Clytia hemisphaerica | exon |
TCONS_00059554-exon-scaffold_329-1491911889:722499..722535 | TCONS_00059554-exon-scaffold_329-1491911889:722499..722535 | Clytia hemisphaerica | exon |
TCONS_00059554-exon-scaffold_329-1510915933:722499..722535 | TCONS_00059554-exon-scaffold_329-1510915933:722499..722535 | Clytia hemisphaerica | exon |
TCONS_00059554-exon-scaffold_329-1575043694:722499..722535 | TCONS_00059554-exon-scaffold_329-1575043694:722499..722535 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_329 | supercontig | scaffold_329:721034..722535 + |
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 ( blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match Name | E-value | Identity | Description | |
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