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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059554 ID=TCONS_00059554|Name=TCONS_00059554|organism=Clytia hemisphaerica|type=transcript|length=320bp
AAGCAAAATCGAAAGCAAACAATAAAACTTCATCGTCTGTCGTAAGACTG
GTGTATTCCAAACAATCATACAACAATTACCGAAAAGAAGCTGAACAGTT
GTTAAATCAATTACCATTCCCTGCTCGTTACGAACTAGTCGATGATGACA
CATCACAAAACGAAAGTCTTGATGAAGATATGGATTTGATAGCTGATCTC
TTGGATGCATACGATTTAGAATCTACTTCAATAACATCCAATATTTCTAA
TTTTAATGACCAAGACGCTGAAGCTCTGAGAGATTACACCTCTTCCTTGC
TTGCAATGATGATATTAATT Run BLAST on NCBI protein sequence of TCONS_00059554-protein >TCONS_00059554-protein ID=TCONS_00059554-protein|Name=TCONS_00059554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
AKSKANNKTSSSVVRLVYSKQSYNNYRKEAEQLLNQLPFPARYELVDDDT
SQNESLDEDMDLIADLLDAYDLESTSITSNISNFNDQDAEALRDYTSSLL
AMMILI Run BLAST on NCBI transcript from alignment at scaffold_329:721034..722535+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059554 ID=TCONS_00059554|Name=TCONS_00059554|organism=Clytia hemisphaerica|type=transcript|length=1502bp|location=Sequence derived from alignment at scaffold_329:721034..722535+ (Clytia hemisphaerica)
AAGCAAAATCGAAAGCAAACAATAAAACTTCATCGTCTGTCGTAAGGTAC
GCAAGGTAAACATTTCCTTCGAAAAAAACTTGCCTGAAAATTCATCTCTT
TGAACTCAACGACCAAGATAGCTTAAATCTTAAGCTTTCTTGGCTCAAGC
AAAAAGCGAAGATATCCAATGCTATGAGAAAAGTAATATTTGATAAGGAG
GGGTTTATTCAGTTTAACTGTTTATTGGAAAAATAGATTAACGACCAAGA
TAGATTTAGATCTTAAGCTTTCTTGGCtcaagcaaaaaagtgaaaaatgc
ttCCAATGCTAAAAATGATTAtgagaaaatcaatatttgatgAGGAGGGG
TTGATTCAGTTTAACTGTTTATTGGAAAAATAGattatttatattttgat
tGCCTTCATCTTCAGACTGGTGTATTCCAAACAATCATACAACAATTACC
GAAAAGAAGCTGAACAGTTGTTAAATCAATTACCATTCCCTGCTCGTTAC
GAACTAGTCGATGATGACACATCACAAAACGAAAGTCTTGATGAAGATAT
GGATTTGATAGCTGATCTCTTGGATGCATACGATTTAGAATCTACTTCAA
TAACATCCAATATTTCTAATTTTAATGACCAAGACGCTGAAGCTCTGAGA
GAATATCtggaaaaattgaaacagaatTTATGATGAGTTCTTGAACCTTC
AATAATTAGTTCaaacagtttttttgttttgtttttcgctACCATTTCTA
ATTTTAATGACCAAGACGCAGAAACTCTGTGAGAGAATATCtggaaaaat
tgaaacagaatCCATGATGAGGTTCTGCTGGTTGAAAGCTTTCAAATACA
GTTGTCTCTCTCTaaatcgatcttcaagggactaaAAACtgtattcgaat
tagagaaagtttaGTAATGAAAATCACTTctcagctgaggggaccaatat
ttagttcgaattatagaaagaatcgaataatagagattcgaattagaaag
agttGACTTTATTACTTTTGTTGTAACCTTTCAATATTcgggattttcaa
aaaattagtaTTTGCATGAATACGTCTGTGTCTTTTGCATTAAGggaatt
taaaagttttcaaaattaaaagttcTAATTAAAGAATCTTTctgaacatt
taaaaaaagaaatgaaatcttGACTTAGCTTAGGGATTCAGAATTTTTAT
TTANTCTTTCTGAACATTTTAAAAAGGAAATCAAATCTTGACTTAGCTTA
GgggttcaaaatttttatttaaaattaacattttaatTAATTCCTCTTAA
AAGAATACTTATAATTTTAGTCACTTTTACTTAGGTAATGTTTTTAATTG
TCAATATTTATACAATGATTTTTAATTATAAATAATTCGTTTGATAGTTG
ATGTTTATGCAGTAGTCCGTTAgcttttttgaattgaaaaaataatatta
agATTTGAACGTAACTTACACCTCTTCCTTGCTTGCAATGATGATATTAA
TT Coding sequence (CDS) from alignment at scaffold_329:721034..722535+ >TCONS_00059554 ID=TCONS_00059554|Name=TCONS_00059554|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_329:721034..722535+ (Clytia hemisphaerica)
GCAAAATCGAAAGCAAACAATAAAACTTCATCGTCTGTCGTAAGACTGGT
GTATTCCAAACAATCATACAACAATTACCGAAAAGAAGCTGAACAGTTGT
TAAATCAATTACCATTCCCTGCTCGTTACGAACTAGTCGATGATGACACA
TCACAAAACGAAAGTCTTGATGAAGATATGGATTTGATAGCTGATCTCTT
GGATGCATACGATTTAGAATCTACTTCAATAACATCCAATATTTCTAATT
TTAATGACCAAGACGCTGAAGCTCTGAGAGATTACACCTCTTCCTTGCTT
GCAATGATGATATTAATTGCAAAATCGAAAGCAAACAATAAAACTTCATC
GTCTGTCGTAAGACTGGTGTATTCCAAACAATCATACAACAATTACCGAA
AAGAAGCTGAACAGTTGTTAAATCAATTACCATTCCCTGCTCGTTACGAA
CTAGTCGATGATGACACATCACAAAACGAAAGTCTTGATGAAGATATGGA
TTTGATAGCTGATCTCTTGGATGCATACGATTTAGAATCTACTTCAATAA
CATCCAATATTTCTAATTTTAATGACCAAGACGCTGAAGCTCTGAGAGAT
TACACCTCTTCCTTGCTTGCAATGATGATATTAATTGCAAAATCGAAAGC
AAACAATAAAACTTCATCGTCTGTCGTAAGACTGGTGTATTCCAAACAAT
CATACAACAATTACCGAAAAGAAGCTGAACAGTTGTTAAATCAATTACCA
TTCCCTGCTCGTTACGAACTAGTCGATGATGACACATCACAAAACGAAAG
TCTTGATGAAGATATGGATTTGATAGCTGATCTCTTGGATGCATACGATT
TAGAATCTACTTCAATAACATCCAATATTTCTAATTTTAATGACCAAGAC
GCTGAAGCTCTGAGAGATTACACCTCTTCCTTGCTTGCAATGATGATATT
AATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059554-exon-scaffold_329-1491911889:721034..721079 | TCONS_00059554-exon-scaffold_329-1491911889:721034..721079 | Clytia hemisphaerica | exon |
| TCONS_00059554-exon-scaffold_329-1510915933:721034..721079 | TCONS_00059554-exon-scaffold_329-1510915933:721034..721079 | Clytia hemisphaerica | exon |
| TCONS_00059554-exon-scaffold_329-1575043694:721034..721079 | TCONS_00059554-exon-scaffold_329-1575043694:721034..721079 | Clytia hemisphaerica | exon |
| TCONS_00059554-exon-scaffold_329-1491911889:721449..721685 | TCONS_00059554-exon-scaffold_329-1491911889:721449..721685 | Clytia hemisphaerica | exon |
| TCONS_00059554-exon-scaffold_329-1510915933:721449..721685 | TCONS_00059554-exon-scaffold_329-1510915933:721449..721685 | Clytia hemisphaerica | exon |
| TCONS_00059554-exon-scaffold_329-1575043694:721449..721685 | TCONS_00059554-exon-scaffold_329-1575043694:721449..721685 | Clytia hemisphaerica | exon |
| TCONS_00059554-exon-scaffold_329-1491911889:722499..722535 | TCONS_00059554-exon-scaffold_329-1491911889:722499..722535 | Clytia hemisphaerica | exon |
| TCONS_00059554-exon-scaffold_329-1510915933:722499..722535 | TCONS_00059554-exon-scaffold_329-1510915933:722499..722535 | Clytia hemisphaerica | exon |
| TCONS_00059554-exon-scaffold_329-1575043694:722499..722535 | TCONS_00059554-exon-scaffold_329-1575043694:722499..722535 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:721034..722535 + |
Blast
The following BLAST results are available for this feature:
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