|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059561 ID=TCONS_00059561|Name=TCONS_00059561|organism=Clytia hemisphaerica|type=transcript|length=2149bp
aaaaaaattaaaaaaatagaaaatacttCTAACACAAGACACATGGACAG
AGAAAAAGGAGAGAATGTCAACAAAAGAATTTACGAATGCATTCGAAATG
CAAGAAAGATGCTGGATGTGTCAATCAAAGAAgctaataaaaattttgaa
gaatcaGTTACTGATGCCAGGTCGAAATTTGAGGAGTCGATTACTAGTTC
AAAACTCATACTAATCACTTCAGTGGCCATCGCTAAGAAGGCTCTGGACG
AGTCCATAAAGGAAGCTGAAATACATTTAGAGGAGTCAGATAAAGATCAA
CGGTCCTTAGCAGCAGCAGGGACGAAAGGAATATCCAATAAAATTTCTCG
TTCTACAGATCCAAAGCATCAAAAAAGTACCAATGTGTTATCACACAAAC
TTAAGAAGGATTTCAATAAAAAGGTAATCTCTATTCGTTATCCGACAAAC
AAAAATGTAAATAATCGAGATTTGGAGAATTCTATcccaatatctttcca
acagacACCGGTAATTGGTTTATCTTCACAGGGAAACAATAGCAATGTTT
CAAACCTAAATGTTACTACCCTTGGGCTCTCGGAAAGTATGTCCTttatt
caaaacaatggaatttctaGTTCTAGTAATAAGACAATAGTAGAATGTGC
CACTACTCAAGAAGGTACGAATTTCCAATCTTCGTCGTGTGCTCTTCAGA
AGAACAAGAGCGAAGAAGAAGGTTTTTCAGATTTGGTAGAAATTAAAATA
GAACTTGAAGAAAGTGGAGATGAAGGTAGCTTCGCTGTTTCAAACACGAA
TCAAATCGGTGTTCAACCAGAAGATTGTGGACGCGGAGATGCGAAGGATC
AAAATATTGACATGACTCTTTCTGATTCAGTATCTGGTTGTTTCGAGGAG
CAATTAGAAACTGAAACCAATCAAGATCAATTTGAATGTCATGCATGTGG
TATCAAATTTGTCACAAAATATCTTCTGGATAAACATTATTGTCGACCTT
ATCTTCGTATTAAACCAAAACCTGTAAAAAATTCTGATGCAGAAGGAAAC
GAGACAGTTATCAACTTGAACTTCAAATGTCCTCTATGTGAAAATGCGAC
TTTTTCCAGCCTAAAAAAACTAGACCTTCATAAAAAGAGGGCCCACGAAA
CGATATTTCAGACACAATGGAAATGCGACATTTgtgaaaagtttttatca
aACAAAGGTAGCCTTTCTCGACATCTCAAAATGCACAACGGATTGAGGCC
TTACAAGTGTGCAGTTTGTGGTAAATCGTTTTCACAAAAGTATCACTATC
AATACCATCTTAATACTCACTCTAAACCATTCAAATGCGAAGTTTGTGGA
AAATCATTCTCACAAAGACAATCTTTGAATAATCACTTATATCAacatac
cttaagagaagatattttggcgagaagaaattttggcgaatgagccCTTT
CGCCAATTTTAGTGCAATTTGGCTACCGCCATAAACTACggtattttggc
gatttaaaaaaaattctaaatttggcgaaaattaattttagcgaacgacc
aatttttattcaatattagctgaaaaaagagggaaaatagggtttttcta
aattgaaagaaaattaaatttggcaagaatttatttttgcgaatgacata
taaatttaaatttggcggaaagaaatttcTTCTCCTAAGGTAATAATGCA
GAAGATGAAAATAAGTGATAGTTATCGCACACTGTTTCGTAATAtacaaa
aatatagaaaactatgagagagaaaaatataactaatattgtacgagtaa
aagtgtgataactggtttatcgtcaacttgaaaaaatataaattttgata
tttttaatgaccattcgaatcattttcgaatgttttaatgGAAATCTCGA
AAGTGCcacgttttttttcttaatttttgaaaatttaaaatatgagacat
tttataaatttcaaaatttgaaattagaaaGATCGCCTAAATTTGCAATt
atgtaaaaaaagtttttttcagatttttttatttggggAGATCccctttt
atcatttttagggagaatgagcatttctcgcgattcacctgttttttttt
tattttttggacaatgatgtaaaatggtaatgtttaaaaactgatggag Run BLAST on NCBI protein sequence of TCONS_00059561-protein >TCONS_00059561-protein ID=TCONS_00059561-protein|Name=TCONS_00059561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
KKIKKIENTSNTRHMDREKGENVNKRIYECIRNARKMLDVSIKEANKNFE
ESVTDARSKFEESITSSKLILITSVAIAKKALDESIKEAEIHLEESDKDQ
RSLAAAGTKGISNKISRSTDPKHQKSTNVLSHKLKKDFNKKVISIRYPTN
KNVNNRDLENSIPISFQQTPVIGLSSQGNNSNVSNLNVTTLGLSESMSFI
QNNGISSSSNKTIVECATTQEGTNFQSSSCALQKNKSEEEGFSDLVEIKI
ELEESGDEGSFAVSNTNQIGVQPEDCGRGDAKDQNIDMTLSDSVSGCFEE
QLETETNQDQFECHACGIKFVTKYLLDKHYCRPYLRIKPKPVKNSDAEGN
ETVINLNFKCPLCENATFSSLKKLDLHKKRAHETIFQTQWKCDICEKFLS
NKGSLSRHLKMHNGLRPYKCAVCGKSFSQKYHYQYHLNTHSKPFKCEVCG
KSFSQRQSLNNHLYQHTLREDILARRNFGE Run BLAST on NCBI transcript from alignment at scaffold_329:813441..815653+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059561 ID=TCONS_00059561|Name=TCONS_00059561|organism=Clytia hemisphaerica|type=transcript|length=2213bp|location=Sequence derived from alignment at scaffold_329:813441..815653+ (Clytia hemisphaerica)
aaaaaaattaaaaaaatagaaaatacttCTAACACAAGACACATGGACAG
AGAAAAAGGAGAGAATGTCAACAAAAGAATTTACGAATGCATTCGAAATG
CAAGAAAGATGCTGGATGTGTCAATCAAAGAAgctaataaaaattttgaa
gaatcaGTTACTGATGCCAGGTCGAAATTTGAGGAGTCGATTACTAGTTC
AAAACTCATACTAATCACTTCAGTGGCCATCGCTAAGAAGGCTCTGGACG
AGTCCATAAAGGAAGCTGAAATACATTTAGAGGAGTCAGATAAAGATCAA
CGGTCCTTAGCAGCAGCAGGGACGAAAGGAATATCCAATAAAATTTCTCG
TTCTACAGATCCAAAGCATCAAAAAAGTACCAATGTGTTATCACACAAAC
TTAAGAAGGATTTCAATAAAAAGGTAATCTCTATTCGTTATCCGACAAAC
AAAAATGTAAATAATCGAGATTTGGAGAATTCTATcccaatatctttcca
acagacACCGGTAATTGGTTTATCTTCACAGGGAAACAATAGCAATGTTT
CAAACCTAAATGTTACTACCCTTGGGCTCTCGGAAAGTATGTCCTttatt
caaaacaatggaatttctaGTTCTAGTAATAAGACAATAGTAGAATGTGC
CACTACTCAAGAAGGTACGAATTTCCAATCTTCGTCGTGTGCTCTTCAGA
AGAACAAGAGCGAAGAAGAAGGTTTTTCAGATTTGGTAGAAATTAAAATA
GAACTTGAAGAAAGTGGAGATGAAGGTAGCTTCGCTGTTTCAAACACGAA
TCAAATCGGTGTTCAACCAGAAGATTGTGGACGCGGAGATGCGAAGGATC
AAAATATTGACATGACTCTTTCTGATTCAGTATCTGGTTGTTTCGAGGAG
CAATTAGAAACTGAAACCAATCAAGATCAATTTGAATGTCATGCATGTGG
TATCAAATTTGTCACAAAATATCTTCTGGATAAACATTATTGTCGACCTT
ATCTTCGTATTAAACCAAAACCTGTAAAAAATTCTGATGCAGAAGGAAAC
GAGACAGTTATCAACTTGAACTTCAAATGTCCTCTATGTGAAAATGCGAC
TTTTTCCAGCCTAAAAAAACTAGACCTTCATAAAAAGAGGGCCCACGAAA
CGATATTTCAGACACAATGGAAATGCGACATTTgtgaaaagtttttatca
aACAAAGGTAGCCTTTCTCGACATCTCAAAATGCACAACGGATTGAGGCC
TTACACGTGTGCAGTTTGTGGTAAATCGTTTTCACAAAAGTATCNTGCAC
AACGGATTGAGGCCTTACAAGTGTGCAGTTTGTGGTAAATCGTTTTCACA
AAAGTATCACTATCAATACCATCTTAATACTCACTCTAAACCATTCAAAT
GCGAAGTTTGTGGAAAATCATTCTCACAAAGACAATCTTTGAATAATCAC
TTATATCAacataccttaagagaagatattttggcgagaagaaattttgg
cgaatgagccCTTTCGCCAATTTTAGTGCAATTTGGCTACCGCCATAAAC
TACggtattttggcgatttaaaaaaaattctaaatttggcgaaaattaat
tttagcgaacgaccaatttttattcaatattagctgaaaaaagagggaaa
atagggtttttctaaattgaaagaaaattaaatttggcaagaatttattt
ttgcgaatgacatataaatttaaatttggcggaaagaaatttcTTCTCCT
AAGGTAATAATGCAGAAGATGAAAATAAGTGATAGTTATCGCACACTGTT
TCGTAATAtacaaaaatatagaaaactatgagagagaaaaatataactaa
tattgtacgagtaaaagtgtgataactggtttatcgtcaacttgaaaaaa
tataaattttgatatttttaatgaccattcgaatcattttcgaatgtttt
aatgGAAATCTCGAAAGTGCcacgttttttttcttaatttttgaaaattt
aaaatatgagacattttataaatttcaaaatttgaaattagaaaGATCGC
CTAAATTTGCAATtatgtaaaaaaagtttttttcagatttttttatttgg
ggAGATCcccttttatcatttttagggagaatgagcatttctcgcgattc
acctgttttttttttattttttggacaatgatgtaaaatggtaatgttta
aaaactgatggag Coding sequence (CDS) from alignment at scaffold_329:813441..815653+ >TCONS_00059561 ID=TCONS_00059561|Name=TCONS_00059561|organism=Clytia hemisphaerica|type=CDS|length=2886bp|location=Sequence derived from alignment at scaffold_329:813441..815653+ (Clytia hemisphaerica)
aaaaaaattaaaaaaatagaaaatacttCTAACACAAGACACATGGACAG
AGAAAAAGGAGAGAATGTCAACAAAAGAATTTACGAATGCATTCGAAATG
CAAGAAAGATGCTGGATGTGTCAATCAAAGAAgctaataaaaattttgaa
gaatcaGTTACTGATGCCAGGTCGAAATTTGAGGAGTCGATTACTAGTTC
AAAACTCATACTAATCACTTCAGTGGCCATCGCTAAGAAGGCTCTGGACG
AGTCCATAAAGGAAGCTGAAATACATTTAGAGGAGTCAGATAAAGATCAA
CGGTCCTTAGCAGCAGCAGGGACGAAAGGAATATCCAATAAAATTTCTCG
TTCTACAGATCCAAAGCATCAAAAAAGTACCAATGTGTTATCACACAAAC
TTAAGAAGGATTTCAATAAAAAGGTAATCTCTATTCGTTATCCGACAAAC
AAAAATGTAAATAATCGAGATTTGGAGAATTCTATcccaatatctttcca
acagacACCGGTAATTGGTTTATCTTCACAGGGAAACAATAGCAATGTTT
CAAACCTAAATGTTACTACCCTTGGGCTCTCGGAAAGTATGTCCTttatt
caaaacaatggaatttctaGTTCTAGTAATAAGACAATAGTAGAATGTGC
CACTACTCAAGAAGGTACGAATTTCCAATCTTCGTCGTGTGCTCTTCAGA
AGAACAAGAGCGAAGAAGAAGGTTTTTCAGATTTGGTAGAAATTAAAATA
GAACTTGAAGAAAGTGGAGATGAAGGTAGCTTCGCTGTTTCAAACACGAA
TCAAATCGGTGTTCAACCAGAAGATTGTGGACGCGGAGATGCGAAGGATC
AAAATATTGACATGACTCTTTCTGATTCAGTATCTGGTTGTTTCGAGGAG
CAATTAGAAACTGAAACCAATCAAGATCAATTTGAATGTCATGCATGTGG
TATCAAATTTGTCACAAAATATCTTCTGGATAAACATTATTGTCGACCTT
ATCTTCGTATTAAACCAAAACCTGTAAAAAATTCTGATGCAGAAGGAAAC
GAGACAGTTATCAACTTGAACTTCAAATGTCCTCTATGTGAAAATGCGAC
TTTTTCCAGCCTAAAAAAACTAGACCTTCATAAAAAGAGGGCCCACGAAA
CGATATTTCAGACACAATGGAAATGCGACATTTgtgaaaagtttttatca
aACAAAGGTAGCCTTTCTCGACATCTCAAAATGCACAACGGATTGAGGCC
TTACAAGTGTGCAGTTTGTGGTAAATCGTTTTCACAAAAGTATCACTATC
AATACCATCTTAATACTCACTCTAAACCATTCAAATGCGAAGTTTGTGGA
AAATCATTCTCACAAAGACAATCTTTGAATAATCACTTATATCAacatac
cttaagagaagatattttggcgagaagaaattttggcgaatgaaaaaaaa
ttaaaaaaatagaaaatacttCTAACACAAGACACATGGACAGAGAAAAA
GGAGAGAATGTCAACAAAAGAATTTACGAATGCATTCGAAATGCAAGAAA
GATGCTGGATGTGTCAATCAAAGAAgctaataaaaattttgaagaatcaG
TTACTGATGCCAGGTCGAAATTTGAGGAGTCGATTACTAGTTCAAAACTC
ATACTAATCACTTCAGTGGCCATCGCTAAGAAGGCTCTGGACGAGTCCAT
AAAGGAAGCTGAAATACATTTAGAGGAGTCAGATAAAGATCAACGGTCCT
TAGCAGCAGCAGGGACGAAAGGAATATCCAATAAAATTTCTCGTTCTACA
GATCCAAAGCATCAAAAAAGTACCAATGTGTTATCACACAAACTTAAGAA
GGATTTCAATAAAAAGGTAATCTCTATTCGTTATCCGACAAACAAAAATG
TAAATAATCGAGATTTGGAGAATTCTATcccaatatctttccaacagacA
CCGGTAATTGGTTTATCTTCACAGGGAAACAATAGCAATGTTTCAAACCT
AAATGTTACTACCCTTGGGCTCTCGGAAAGTATGTCCTttattcaaaaca
atggaatttctaGTTCTAGTAATAAGACAATAGTAGAATGTGCCACTACT
CAAGAAGGTACGAATTTCCAATCTTCGTCGTGTGCTCTTCAGAAGAACAA
GAGCGAAGAAGAAGGTTTTTCAGATTTGGTAGAAATTAAAATAGAACTTG
AAGAAAGTGGAGATGAAGGTAGCTTCGCTGTTTCAAACACGAATCAAATC
GGTGTTCAACCAGAAGATTGTGGACGCGGAGATGCGAAGGATCAAAATAT
TGACATGACTCTTTCTGATTCAGTATCTGGTTGTTTCGAGGAGCAATTAG
AAACTGAAACCAATCAAGATCAATTTGAATGTCATGCATGTGGTATCAAA
TTTGTCACAAAATATCTTCTGGATAAACATTATTGTCGACCTTATCTTCG
TATTAAACCAAAACCTGTAAAAAATTCTGATGCAGAAGGAAACGAGACAG
TTATCAACTTGAACTTCAAATGTCCTCTATGTGAAAATGCGACTTTTTCC
AGCCTAAAAAAACTAGACCTTCATAAAAAGAGGGCCCACGAAACGATATT
TCAGACACAATGGAAATGCGACATTTgtgaaaagtttttatcaaACAAAG
GTAGCCTTTCTCGACATCTCAAAATGCACAACGGATTGAGGCCTTACAAG
TGTGCAGTTTGTGGTAAATCGTTTTCACAAAAGTATCACTATCAATACCA
TCTTAATACTCACTCTAAACCATTCAAATGCGAAGTTTGTGGAAAATCAT
TCTCACAAAGACAATCTTTGAATAATCACTTATATCAacataccttaaga
gaagatattttggcgagaagaaattttggcgaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059561-exon-scaffold_329-1491911889:813441..814687 | TCONS_00059561-exon-scaffold_329-1491911889:813441..814687 | Clytia hemisphaerica | exon |
| TCONS_00059561-exon-scaffold_329-1510915933:813441..814687 | TCONS_00059561-exon-scaffold_329-1510915933:813441..814687 | Clytia hemisphaerica | exon |
| TCONS_00059561-exon-scaffold_329-1575043694:813441..814687 | TCONS_00059561-exon-scaffold_329-1575043694:813441..814687 | Clytia hemisphaerica | exon |
| TCONS_00059561-exon-scaffold_329-1491911889:814752..815653 | TCONS_00059561-exon-scaffold_329-1491911889:814752..815653 | Clytia hemisphaerica | exon |
| TCONS_00059561-exon-scaffold_329-1510915933:814752..815653 | TCONS_00059561-exon-scaffold_329-1510915933:814752..815653 | Clytia hemisphaerica | exon |
| TCONS_00059561-exon-scaffold_329-1575043694:814752..815653 | TCONS_00059561-exon-scaffold_329-1575043694:814752..815653 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:813441..815653 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00059561 vs. Swiss-Prot (Human)
Match: HIC2 (Hypermethylated in cancer 2 protein OS=Homo sapiens GN=HIC2 PE=1 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 7.460e-19 Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 1
Query: 1072 FKCPLCENATFSSLKKLDLHKKRAHETIFQTQW-----KCDICEKFLSNKGSLSRHLKMHNGLRPYKCAVCGKSFSQKYHYQYHLNTHS--KPFKCEVCGKSFSQRQSLNNHLYQHT 1401
FKC +CE T+ L H+K T W C+IC K + +G+++RH++ H GL+P+ C CG F+++Y H+ HS KP++C++CG F+Q+++L +HL HT
Sbjct: 505 FKCSVCEK-TYKDPATLRQHEK--------THWLTRPFPCNICGKMFTQRGTMTRHMRSHLGLKPFACDECGMRFTRQYRLTEHMRVHSGEKPYECQLCGGKFTQQRNLISHLRMHT 612
The following BLAST results are available for this feature:
|
