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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059569 ID=TCONS_00059569|Name=TCONS_00059569|organism=Clytia hemisphaerica|type=transcript|length=4947bpRun BLAST on NCBI protein sequence of TCONS_00059569-protein >TCONS_00059569-protein ID=TCONS_00059569-protein|Name=TCONS_00059569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1182bp MSSITRPVDIFEYHSSLIDSHNEQIDHTGYGYSHGNHDSSKQTKSVLDDDRun BLAST on NCBI transcript from alignment at scaffold_329:30279..47959- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059569 ID=TCONS_00059569|Name=TCONS_00059569|organism=Clytia hemisphaerica|type=transcript|length=17681bp|location=Sequence derived from alignment at scaffold_329:30279..47959- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_329:30279..47959- >TCONS_00059569 ID=TCONS_00059569|Name=TCONS_00059569|organism=Clytia hemisphaerica|type=CDS|length=31941bp|location=Sequence derived from alignment at scaffold_329:30279..47959- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059569 vs. Swiss-Prot (Human)
Match: TEP1 (Telomerase protein component 1 OS=Homo sapiens GN=TEP1 PE=1 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 1.733e-34 Identity = 147/587 (25.04%), Postives = 262/587 (44.63%), Query Frame = 1
Query: 1987 RFLEKYQNLPKRPSTE--WKTIRIFISSTFTDFFVEREIIIKRIMPELQEWADKLKVRIVECDLRWGVPANTDFKETIGIMMDELDRCIEETNGKPFFVCLLGDRYGWVPTRKYVSQDIINQFDWV--YPT--SMTHMEIIHGALRTN----SQNALFMMREPSSLEGIPESYQPLYRDRSLLAKQSIKRLKSELRNTFPGQTFDYSSEVAGVDKLTKKVAFNHLEDFEEIVIKFLKEKIHDYIKENFENETECLTTSQDIFIQKRGEFLLG--RDKELRMLQEFSDAEMCDDDLDAAQRVLFVVAPSGMGKSSLMARYVQQLQK-DGIPCA----WNFXXXXXXXXXXXXVLQHLCETLGRILK--VKLPQTGDQLIHDYNALKNYFEKLL-KEISKKHPG--FIIIIDAINQFKDNWGRSGA-WLP--LPSDELNIKYVISTTPNTQDNNFSILMQKFFKISETFILPGLNKATRKQMIQTYFSKFNKTLDEE----QSEIIVSLPEAFSPLFLTIACEETRIFGIFENLTKHVKKLPGKIPDLISFVFKRLMKEDETHLVEPTLCLIYCSNSGLTESELRKLLA 3660
R LE+ P P ++ W++IR+FISSTF D ER+++++ ++P LQ A ++ + DLRWGV + +L+ C+ E FV +LG RYG++P + F W YP+ S+T ME++ R S AL R+ S L +P++++ + S A + I LKS L Y E GV + LE+F ++V++ + I + + ++ D +Q + L R+LQ+ M R+ V SG GK++ +A V LQ DG A ++F+ + + ++L+ LC L LK LP T L+ + ++LL K HPG ++IID ++ D G+ + W+P LP + V+S + D +++ + + L L + R ++++ + + K L+E Q +++ E+ PL+L + + R+F ++E +++ ++ LP +P L+ + L KE ++ L + + SGLT +L +L+
Sbjct: 878 RPLEEDTPSPLAPVSQQGWRSIRLFISSTFRDMHGERDLLLRSVLPALQARAAPHRISLHGIDLRWGVTEEETRRNR------QLEVCLGEVENAQLFVGILGSRYGYIPPSYNLPDH--PHFHWAQQYPSGRSVTEMEVMQFLNRNQRLQPSAQALIYFRDSSFLSSVPDAWKSDFVSESEEAARRISELKSYLSRQKGITCRRYPCEWGGVA--AGRPYVGGLEEFGQLVLQDVWNMIQKLYLQPGALLEQPVSIPDDDLVQATFQQLQKPPSPARPRLLQDTVQRLMLPHG-----RLSLVTGQSGQGKTAFLASLVSALQAPDGAKVASLVFFHFSGARPDQGLALTLLRRLCTYLRGQLKEPGALPSTYRSLVWELQ------QRLLPKSAESLHPGQTQVLIIDGADRLVDQNGQLISDWIPKKLPR---CVHLVLSV---SSDAGLGETLEQ-SQGAHVLALGPLEASARARLVREELALYGKRLEESPFNNQMRLLLVKRESGRPLYLRLVTDHLRLFTLYEQVSERLRTLPATVPLLLQHILSTLEKEHGPDVLPQALTALEVTRSGLTVDQLHGVLS 1436 The following BLAST results are available for this feature:
BLAST of TCONS_00059569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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