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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059570 ID=TCONS_00059570|Name=TCONS_00059570|organism=Clytia hemisphaerica|type=transcript|length=3813bpRun BLAST on NCBI transcript from alignment at scaffold_329:34917..48291- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059570 ID=TCONS_00059570|Name=TCONS_00059570|organism=Clytia hemisphaerica|type=transcript|length=13375bp|location=Sequence derived from alignment at scaffold_329:34917..48291- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00059570 vs. Swiss-Prot (Human)
Match: TEP1 (Telomerase protein component 1 OS=Homo sapiens GN=TEP1 PE=1 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 6.607e-33 Identity = 148/587 (25.21%), Postives = 261/587 (44.46%), Query Frame = 3
Query: 2133 RFLEKYQNLPKRPSTE--WKTIRIFISSTFTDFFVEREIIIKRIMPELQEWADKLKVRIVECDLRWGVPANTDFKETIGIMMDELDRCIEETNGKPFFVCLLGDRYGWVPTRKYVSQDIINQFDWV--YPT--SMTHMEIIHGALRTN----SQNALFMMREPSSLEGIPESYQPLYRDRSLLAKQSIKRLKSELRNTFPGQTFDYSSEVAGVDKLTKKVAFNHLEDFEEIVIKFLKEKIHDYIKENFENETECLTTSQDIFIQKRGEFLLG--RDKELRMLQEFSDAEMCDDDLDAAQRVLFVVAPSGMGKSSLMARYVQQLQK-DGIPCA----WNFXXXXXXXXXXXXVLQHLCETLGRILKV--KLPQTGDQLIHDYNALKNYFEKLL-KEISKKHPG--FIIIIDAINQFKDNWGR-SGAWLP--LPSDELNIKYVISTTPNTQDNNFSILMQKFFKISETFILPGLNKATRKQMIQTYFSKFNKTLDEE----QSEIIVSLPEAFSPLFLTIACEETRIFGIFENLTKHVKKLPGKIPDLISFVFKRLMKEDETHLVEPTLCLIYCSNSGLTESELRKLLA 3806
R LE+ P P ++ W++IR+FISSTF D ER+++++ ++P LQ A ++ + DLRWGV + +L+ C+ E FV +LG RYG++P + F W YP+ S+T ME++ R S AL R+ S L +P++++ + S A + I LKS L Y E GV V LE+F ++V++ + I + + ++ D +Q + L R+LQ+ M R+ V SG GK++ +A V LQ DG A ++F+ + + ++L+ LC L LK LP T L+ + ++LL K HPG ++IID ++ D G+ W+P LP + V+S + D +++ + + L L + R ++++ + + K L+E Q +++ E+ PL+L + + R+F ++E +++ ++ LP +P L+ + L KE ++ L + + SGLT +L +L+
Sbjct: 878 RPLEEDTPSPLAPVSQQGWRSIRLFISSTFRDMHGERDLLLRSVLPALQARAAPHRISLHGIDLRWGVTEEETRRNR------QLEVCLGEVENAQLFVGILGSRYGYIPPSYNLPDH--PHFHWAQQYPSGRSVTEMEVMQFLNRNQRLQPSAQALIYFRDSSFLSSVPDAWKSDFVSESEEAARRISELKSYLSRQKGITCRRYPCEWGGVAAGRPYVG--GLEEFGQLVLQDVWNMIQKLYLQPGALLEQPVSIPDDDLVQATFQQLQKPPSPARPRLLQDTVQRLMLPHG-----RLSLVTGQSGQGKTAFLASLVSALQAPDGAKVASLVFFHFSGARPDQGLALTLLRRLCTYLRGQLKEPGALPSTYRSLVWELQ------QRLLPKSAESLHPGQTQVLIIDGADRLVDQNGQLISDWIPKKLPR---CVHLVLSV---SSDAGLGETLEQ-SQGAHVLALGPLEASARARLVREELALYGKRLEESPFNNQMRLLLVKRESGRPLYLRLVTDHLRLFTLYEQVSERLRTLPATVPLLLQHILSTLEKEHGPDVLPQALTALEVTRSGLTVDQLHGVLS 1436 The following BLAST results are available for this feature:
BLAST of TCONS_00059570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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