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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059571 ID=TCONS_00059571|Name=TCONS_00059571|organism=Clytia hemisphaerica|type=transcript|length=1288bp
TTTTGGGTTCACAttacaaaaagtataaaaacaaTGCCCTGTGAACTTCA
CTCTCCTCTTAATTTATATCAAATGCtcttgcaaaaatatttttttcttt
caaaagattcaGCTAAAATTGTGTtatgtttttttggattttagaatTAT
ATTCAATTCTTAGCTTGTTTTTTAGATTTCCTATATTATGGATAGCTTCA
TCGCAGGATGTCTTGGTGGCGGACTTGGTATGTTTGTTGGTCATCCTTTC
GATACCATAAAGGTTCGCTTGCAATCAGAACATGTCCAATCCTCAAGTGG
TTTACGTTACAAAGGTATTATCGATGGTACCATCAAAATCATTAAACAAG
AAGGGGTGACTGGTATCTACAAAGGAGCAACAGCACCCATTGTTGGAGTG
TCTGCACAAAACGCTCTCATGTTTGGTATCCAACGTTTCACTCGTCAATA
TTTCCAACCCAATCTTAAAGGGGAATTCATGGCTGGCATGGTGACTGGCA
CTTTAATGTCGGTCCTTGCGGCCCCAGTTGAAATGACAAAAACAAGGCTA
CAAGTGCAGAACATTGGTGAGAGGACTGTTAGAGCACAACGTAAATATAA
GGGACCCATTGATGTTCTACATAAAATGTACCTTGAGGAAGGTATCAGAG
GTCCTGGTCGTAGCTTTTGGATCACTTTAGTTCGAGATTCTCCTGGTTAC
GGAATCTATTTTTCTTCTTATCCATGGTTATGTCAACTGATGTTTGGAGC
TGATCAACACATACACGATCTTAACGTATTACAATTATCGTTAGCTGGTA
GTTTAGCAGGTGCTATCTCATGGTTGGTTATCTACCCtattgacgtcatc
aaaacacgCGTCTGTTCTGAGGGATTCGCACCCGCTGGAAAATATCGTAA
TTACGCGCATTGTTTTACGGAATGTTACCGTGAAGGTGGCGTAAAGACCT
TCTTTCGGGGACTATTTCCGACGTTGATACGTGCTCTTCCCGTAAACGGT
GTTACGTTTTCAACCGTATCTGTTGTAGAATCTTATTTTGCGAAACGTCA
TTCAGAAACTTGAATTTCTTTATCTTATTAAAATGATAGGTATATATAAT
TATAGGTAGATTTGGATGGAcctatattttaaaattttaactgGGGTTCA
ATTTATTGGGAGTTTTAGATTACAGTATTTTTACTGCTTTgctaagaaaa
tattttcattgttaCACAAAATTTTCCACTTGTGGGTAGAACTAAATCGT
ATGATTTTTACATCCGTTGTTCCAagtaaaaacagaaa Run BLAST on NCBI protein sequence of TCONS_00059571-protein >TCONS_00059571-protein ID=TCONS_00059571-protein|Name=TCONS_00059571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MDSFIAGCLGGGLGMFVGHPFDTIKVRLQSEHVQSSSGLRYKGIIDGTIK
IIKQEGVTGIYKGATAPIVGVSAQNALMFGIQRFTRQYFQPNLKGEFMAG
MVTGTLMSVLAAPVEMTKTRLQVQNIGERTVRAQRKYKGPIDVLHKMYLE
EGIRGPGRSFWITLVRDSPGYGIYFSSYPWLCQLMFGADQHIHDLNVLQL
SLAGSLAGAISWLVIYPIDVIKTRVCSEGFAPAGKYRNYAHCFTECYREG
GVKTFFRGLFPTLIRALPVNGVTFSTVSVVESYFAKRHSET Run BLAST on NCBI transcript from alignment at scaffold_329:48905..51805- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059571 ID=TCONS_00059571|Name=TCONS_00059571|organism=Clytia hemisphaerica|type=transcript|length=2901bp|location=Sequence derived from alignment at scaffold_329:48905..51805- (Clytia hemisphaerica)
TTTTGGGTTCACATTACAAAAAGTATAAAAACAATGCCCTGTGAACTTCA
CTCTCCTCTTAATTTATATCAAATGCTCTTGCAAAAATATTTTTTTCTTT
CAAAAGATTCAGCTAAAATTGTGTTATGTTTTTTTGGATTTTAGAATTAT
ATTCAATTCTTAGCTTGTTTTTTAGATTTCCTATATTATGGATAGCTTCA
TCGCAGGATGTCTTGGTGGTTTGTATATTTTAATTTTTTCAAAGTTTTGC
TTTTCATCTGCCTTTAGTACGCAGGTTAAATTTTCTTATATGACGATTCA
TTTTGCTTAATATATTGATATAGATATAGTGACTTGTCATAGAAATTTAA
CAGTAATTGGTATTTGCTAAGGANTATAGTGATATAGATATAGTGACTTG
TCCTAGAAATTTAACAGTAATTGGTATTTGCTAAGGAGGTTAGGGAAATT
TCTTTTGAGGGTAGAACATGAGCATAAAGTTTATACAAAGTTTTGCTCTT
CTTTCTTCATCAGGCGGACTTGGTATGTTTGTTGGTCATCCTTTCGATAC
CATAAAGGTTTGTCTATAGCATTCATCAGTAAACTACTAACAGCATTTTT
TATAGAAACTCTGGACTTAGACCTGGGGCACAATACCTCTTATGACGAGC
GTTATTAAAGATTGCAATGTCAAATCCCCTTATATAAACAAAATGGCTGA
ATTGGATATCGGTTTACTTGCATTAAGTGTTTGAATAAAGGCTCCTCAAA
TTTCTCGATATGCTGTTGGAACAGTTCTCAACCGTATACACTGACCCCCT
TCCAATCAATCCAAATTTCTCTTTTTTTACCAGGTAGCTCCAGTCGGTAA
AGAATTTATATTCGGTATAGCCTCAAACTTAAGCGATTATAGCTTATTAG
GTAATCTGATTTTAGGCGGTGTAAGTTATAGCTATTAGAGTAGGTATGGC
GCTCTATCCTAAAAATAGCCTTTTCTAGTGTACCTCAAGTAGAAATGGGA
TAGACTTCTTAATTCATGGCCAGTAGATCAACAAATTCAACCTTTCAAGT
TCCTTGATAATTCCCTTGCATTTTTTCTCCCTCATTCATTTTCAAGGTTC
GCTTGCAATCAGAACATGTCCAATCCTCAAGTGGTTTACGTTACAAAGGT
ATTATCGATGGTACCATCAAAATCATTAAACAAGAAGGGGTATGAATGCC
AGCTTGTAATTCTTGATTTCGATGAACATTTGAGTCACCTCTTTCAAATC
TTCTAAATTTCAAAAACTTTCTGACTTTTGTTATGTTGTTATAGACGAAT
TTATTTGTTGAAAGGCAATAGTTCGTTTTTCAAAATTAATGAGACGGGTG
TCGACTACGAATTTACTCAACTCAAAATGTACAACTTCAAACGGTTATAA
CATTTGATAGAGAAAGTATTTTTTGATTTTCTAACTAAACTACGCTAGAC
TCTGCAACGATTGACATAATATAAGACATTTGAAATTAGACTAAGGCCAC
TGACTTAGCATCTGAAGGTAAAGTTTTCAATGACATTCCACACGAGTCAG
TTTTTTCATTCCTGTCGGTAGTCAAAATGTGTTTAAAAAGCACTCAATTT
TATTTTTATTAAAAGCAACCATTTATAAAAACAATTTTCCGTAAACGTGA
TGCAGATGTACGAAAAAAGGAGATATTTCTCAGTCTTGAGAAATGGCCAA
AAGTACAAAAAAACATAAAAAACCTTGTAAAACCATGCACCCAGATACCT
CATAGATAGAAGTATCGTTTAACTTCAAGTAGAATAAAGCAACAAATCAA
TTGGTAATGCAATGAGGGAAAGGCTATTCGAACAAAAATCCCTTATGAAA
ATTTTTTGGGCTAACGGTAAAATTGTCTTTCAGCAATGATTGCTGAATAA
GCATTTTTATTTATGCCTATGATCGTTGACGACCTTTATTAATCGTTTAA
GTATTTTCGTTTTAACAGGTGACTGGTATCTACAAAGGAGCAACAGCACC
CATTGTTGGAGTGTCTGCACAAAACGCTCTCATGTTTGGTATCCAACGTT
TCACTCGTCAATATTTCCAACCCAATCTTAAAGGGGAATTCATGGCTGGC
ATGGTGACTGGCACTTTAATGTCGGTCCTTGCGGCCCCAGTTGAAATGAC
AAAAACAAGGCTACAAGTGCAGAACATTGGTGAGAGGACTGTTAGAGCAC
AACGTAAATATAAGGGACCCATTGATGTTCTACATAAAATGTACCTTGAG
GAAGGTATCAGAGGTCCTGGTCGTAGCTTTTGGATCACTTTAGTTCGAGA
TTCTCCTGGTTACGGAATCTATTTTTCTTCTTATCCATGGTTATGTCAAC
TGATGTTTGGAGCTGATCAACACATACACGATCTTAACGTATTACAATTA
TCGTTAGCTGGTAGTTTAGCAGGTGCTATCTCATGGTTGGTTATCTACCC
TATTGACGTCATCAAAACACGCGTCTGTTCTGAGGGATTCGCACCCGCTG
GAAAATATCGTAATTACGCGCATTGTTTTACGGAATGTTACCGTGAAGGT
GGCGTAAAGACCTTCTTTCGGGGACTATTTCCGACGTTGATACGTGCTCT
TCCCGTAAACGGTGTTACGTTTTCAACCGTATCTGTTGTAGAATCTTATT
TTGCGAAACGTCATTCAGAAACTTGAATTTCTTTATCTTATTAAAATGAT
AGGTATATATAATTATAGGTAGATTTGGATGGACCTATATTTTAAAATTT
TAACTGGGGTTCAATTTATTGGGAGTTTTAGATTACAGTATTTTTACTGC
TTTGCTAAGAAAATATTTTCATTGTTACACAAAATTTTCCACTTGTGGGT
AGAACTAAATCGTATGATTTTTACATCCGTTGTTCCAAGTAAAAACAGAA
A Coding sequence (CDS) from alignment at scaffold_329:48905..51805- >TCONS_00059571 ID=TCONS_00059571|Name=TCONS_00059571|organism=Clytia hemisphaerica|type=CDS|length=3504bp|location=Sequence derived from alignment at scaffold_329:48905..51805- (Clytia hemisphaerica)
GTGACTGGTATCTACAAAGGAGCAACAGCACCCATTGTTGGAGTGTCTGC
ACAAAACGCTCTCATGTTTGGTATCCAACGTTTCACTCGTCAATATTTCC
AACCCAATCTTAAAGGGGAATTCATGGCTGGCATGGTGACTGGCACTTTA
ATGTCGGTCCTTGCGGCCCCAGTTGAAATGACAAAAACAAGGCTACAAGT
GCAGAACATTGGTGAGAGGACTGTTAGAGCACAACGTAAATATAAGGGAC
CCATTGATGTTCTACATAAAATGTACCTTGAGGAAGGTATCAGAGGTCCT
GGTCGTAGCTTTTGGATCACTTTAGTTCGAGATTCTCCTGGTTACGGAAT
CTATTTTTCTTCTTATCCATGGTTATGTCAACTGATGTTTGGAGCTGATC
AACACATACACGATCTTAACGTATTACAATTATCGTTAGCTGGTAGTTTA
GCAGGTGCTATCTCATGGTTGGTTATCTACCCTATTGACGTCATCAAAAC
ACGCGTCTGTTCTGAGGGATTCGCACCCGCTGGAAAATATCGTAATTACG
CGCATTGTTTTACGGAATGTTACCGTGAAGGTGGCGTAAAGACCTTCTTT
CGGGGACTATTTCCGACGTTGATACGTGCTCTTCCCGTAAACGGTGTTAC
GTTTTCAACCGTATCTGTTGTAGAATCTTATTTTGCGAAACGTCATTCAG
AAACTTGAGTTCGCTTGCAATCAGAACATGTCCAATCCTCAAGTGGTTTA
CGTTACAAAGGTATTATCGATGGTACCATCAAAATCATTAAACAAGAAGG
GGCGGACTTGGTATGTTTGTTGGTCATCCTTTCGATACCATAAAGATGGA
TAGCTTCATCGCAGGATGTCTTGGTGGTGACTGGTATCTACAAAGGAGCA
ACAGCACCCATTGTTGGAGTGTCTGCACAAAACGCTCTCATGTTTGGTAT
CCAACGTTTCACTCGTCAATATTTCCAACCCAATCTTAAAGGGGAATTCA
TGGCTGGCATGGTGACTGGCACTTTAATGTCGGTCCTTGCGGCCCCAGTT
GAAATGACAAAAACAAGGCTACAAGTGCAGAACATTGGTGAGAGGACTGT
TAGAGCACAACGTAAATATAAGGGACCCATTGATGTTCTACATAAAATGT
ACCTTGAGGAAGGTATCAGAGGTCCTGGTCGTAGCTTTTGGATCACTTTA
GTTCGAGATTCTCCTGGTTACGGAATCTATTTTTCTTCTTATCCATGGTT
ATGTCAACTGATGTTTGGAGCTGATCAACACATACACGATCTTAACGTAT
TACAATTATCGTTAGCTGGTAGTTTAGCAGGTGCTATCTCATGGTTGGTT
ATCTACCCTATTGACGTCATCAAAACACGCGTCTGTTCTGAGGGATTCGC
ACCCGCTGGAAAATATCGTAATTACGCGCATTGTTTTACGGAATGTTACC
GTGAAGGTGGCGTAAAGACCTTCTTTCGGGGACTATTTCCGACGTTGATA
CGTGCTCTTCCCGTAAACGGTGTTACGTTTTCAACCGTATCTGTTGTAGA
ATCTTATTTTGCGAAACGTCATTCAGAAACTTGAGTTCGCTTGCAATCAG
AACATGTCCAATCCTCAAGTGGTTTACGTTACAAAGGTATTATCGATGGT
ACCATCAAAATCATTAAACAAGAAGGGGCGGACTTGGTATGTTTGTTGGT
CATCCTTTCGATACCATAAAGATGGATAGCTTCATCGCAGGATGTCTTGG
TGGTGACTGGTATCTACAAAGGAGCAACAGCACCCATTGTTGGAGTGTCT
GCACAAAACGCTCTCATGTTTGGTATCCAACGTTTCACTCGTCAATATTT
CCAACCCAATCTTAAAGGGGAATTCATGGCTGGCATGGTGACTGGCACTT
TAATGTCGGTCCTTGCGGCCCCAGTTGAAATGACAAAAACAAGGCTACAA
GTGCAGAACATTGGTGAGAGGACTGTTAGAGCACAACGTAAATATAAGGG
ACCCATTGATGTTCTACATAAAATGTACCTTGAGGAAGGTATCAGAGGTC
CTGGTCGTAGCTTTTGGATCACTTTAGTTCGAGATTCTCCTGGTTACGGA
ATCTATTTTTCTTCTTATCCATGGTTATGTCAACTGATGTTTGGAGCTGA
TCAACACATACACGATCTTAACGTATTACAATTATCGTTAGCTGGTAGTT
TAGCAGGTGCTATCTCATGGTTGGTTATCTACCCTATTGACGTCATCAAA
ACACGCGTCTGTTCTGAGGGATTCGCACCCGCTGGAAAATATCGTAATTA
CGCGCATTGTTTTACGGAATGTTACCGTGAAGGTGGCGTAAAGACCTTCT
TTCGGGGACTATTTCCGACGTTGATACGTGCTCTTCCCGTAAACGGTGTT
ACGTTTTCAACCGTATCTGTTGTAGAATCTTATTTTGCGAAACGTCATTC
AGAAACTTGAGTTCGCTTGCAATCAGAACATGTCCAATCCTCAAGTGGTT
TACGTTACAAAGGTATTATCGATGGTACCATCAAAATCATTAAACAAGAA
GGGGCGGACTTGGTATGTTTGTTGGTCATCCTTTCGATACCATAAAGATG
GATAGCTTCATCGCAGGATGTCTTGGTGGTGACTGGTATCTACAAAGGAG
CAACAGCACCCATTGTTGGAGTGTCTGCACAAAACGCTCTCATGTTTGGT
ATCCAACGTTTCACTCGTCAATATTTCCAACCCAATCTTAAAGGGGAATT
CATGGCTGGCATGGTGACTGGCACTTTAATGTCGGTCCTTGCGGCCCCAG
TTGAAATGACAAAAACAAGGCTACAAGTGCAGAACATTGGTGAGAGGACT
GTTAGAGCACAACGTAAATATAAGGGACCCATTGATGTTCTACATAAAAT
GTACCTTGAGGAAGGTATCAGAGGTCCTGGTCGTAGCTTTTGGATCACTT
TAGTTCGAGATTCTCCTGGTTACGGAATCTATTTTTCTTCTTATCCATGG
TTATGTCAACTGATGTTTGGAGCTGATCAACACATACACGATCTTAACGT
ATTACAATTATCGTTAGCTGGTAGTTTAGCAGGTGCTATCTCATGGTTGG
TTATCTACCCTATTGACGTCATCAAAACACGCGTCTGTTCTGAGGGATTC
GCACCCGCTGGAAAATATCGTAATTACGCGCATTGTTTTACGGAATGTTA
CCGTGAAGGTGGCGTAAAGACCTTCTTTCGGGGACTATTTCCGACGTTGA
TACGTGCTCTTCCCGTAAACGGTGTTACGTTTTCAACCGTATCTGTTGTA
GAATCTTATTTTGCGAAACGTCATTCAGAAACTTGAGTTCGCTTGCAATC
AGAACATGTCCAATCCTCAAGTGGTTTACGTTACAAAGGTATTATCGATG
GTACCATCAAAATCATTAAACAAGAAGGGGCGGACTTGGTATGTTTGTTG
GTCATCCTTTCGATACCATAAAGATGGATAGCTTCATCGCAGGATGTCTT
GGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00059571-exon-scaffold_329-1575043694:51588..51805 | TCONS_00059571-exon-scaffold_329-1575043694:51588..51805 | Clytia hemisphaerica | exon |
| TCONS_00059571-exon-scaffold_329-1575043694:51249..51292 | TCONS_00059571-exon-scaffold_329-1575043694:51249..51292 | Clytia hemisphaerica | exon |
| TCONS_00059571-exon-scaffold_329-1575043694:50617..50709 | TCONS_00059571-exon-scaffold_329-1575043694:50617..50709 | Clytia hemisphaerica | exon |
| TCONS_00059571-exon-scaffold_329-1575043694:48905..49837 | TCONS_00059571-exon-scaffold_329-1575043694:48905..49837 | Clytia hemisphaerica | exon |
| TCONS_00059571-exon-scaffold_329-1510915933:51588..51805 | TCONS_00059571-exon-scaffold_329-1510915933:51588..51805 | Clytia hemisphaerica | exon |
| TCONS_00059571-exon-scaffold_329-1510915933:51249..51292 | TCONS_00059571-exon-scaffold_329-1510915933:51249..51292 | Clytia hemisphaerica | exon |
| TCONS_00059571-exon-scaffold_329-1510915933:50617..50709 | TCONS_00059571-exon-scaffold_329-1510915933:50617..50709 | Clytia hemisphaerica | exon |
| TCONS_00059571-exon-scaffold_329-1510915933:48905..49837 | TCONS_00059571-exon-scaffold_329-1510915933:48905..49837 | Clytia hemisphaerica | exon |
| TCONS_00059571-exon-scaffold_329-1491911889:51588..51805 | TCONS_00059571-exon-scaffold_329-1491911889:51588..51805 | Clytia hemisphaerica | exon |
| TCONS_00059571-exon-scaffold_329-1491911889:51249..51292 | TCONS_00059571-exon-scaffold_329-1491911889:51249..51292 | Clytia hemisphaerica | exon |
| TCONS_00059571-exon-scaffold_329-1491911889:50617..50709 | TCONS_00059571-exon-scaffold_329-1491911889:50617..50709 | Clytia hemisphaerica | exon |
| TCONS_00059571-exon-scaffold_329-1491911889:48905..49837 | TCONS_00059571-exon-scaffold_329-1491911889:48905..49837 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:48905..51805 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
Blast
BLAST of TCONS_00059571 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2) HSP 1 Score: 187.193 bits (474), Expect = 7.001e-55 Identity = 121/282 (42.91%), Postives = 173/282 (61.35%), Query Frame = 2
Query: 194 SFIAXXXXXXXXMFVGHPFDTIKVRLQSEHVQSSSGLRYXXXXXXXXXXXXQEGVTGIYKGATAPIVGVSAQNALMFGIQRFT-RQYFQPNLKGEFMAGMVTGTLMSVLAAPVEMTKTRLQVQNIGERTVRAQRKYKGPIDVLHKMYLEEGIRGPGRSFWITLVRDSPGYGIYFSSYPWLCQLMFGADQHIHDLNVLQXXXXXXXXXXISWLVIYPIDVIKTRVCSEGFAPAGKYRNYAHCFTECYREGGVKTFFRGLFPTLIRALPVNGVTFSTVSVVESY 1036
F+AGC GG G+ VGHPFDT+KVRLQ VQS +Y+G + IIKQE V G+YKG +P++G++ NAL+FG+Q T R + +F+AG G + V+ P+E+ KTRLQ+Q+ G R YKG +D L ++Y EG+RG R TL+R++P +G+YF +Y L + + + L V +L LAG +G +SWL YP+DV+K+R+ ++G A +YR C + YR G + F RGL TL+RA PVN TF+TV+VV +Y
Sbjct: 4 DFLAGCAGGVAGVLVGHPFDTVKVRLQ---VQSVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQDAGP-----ARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRAL--GCEPGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFATVTVVLTY 275
The following BLAST results are available for this feature:
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