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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059596 ID=TCONS_00059596|Name=TCONS_00059596|organism=Clytia hemisphaerica|type=transcript|length=1518bp
CTCAATTCTTGgttttcataagcatataattcTTCTTTCGTGTGGGTTTT
AACATACGATATCTGTTTTTCAccacaaaaaagaacaaaacacCTTGAAA
AACCGAACCATGGCTATCAATTTACGGGTGTGTTTTTGATATAACGGTTA
CACGNAGAACCATGGCTATCAATTTACGGGTGTGTTTTTAATATAACGGT
TACACGGTGTGTTTACACGTTGCAGTTTCACCAGAAAACCCCAAAGATCA
TATATTTGTGGTTATAAAAGAGTCCAAAAGTAGATCTTATTGTTCACCGT
TCTGGTATAAAAGCCCATCAGATTTGGAGTAAAATCATTGCAGTTTGTTT
TTGAGACCTTTCAAAGATAATCTGCAAAGAAACTCAACAATCATGAAGAC
CGCTTTCGTTTTCGTTACTTTAGCTTTGGCATATGCCTCAGCTTTGACAT
TCGGCGATGCTGatgGAAAATTGACCTGTGGATCGAACAGCATGACTGTC
ACTTTGGACAAAGATAAATTCGACCAACACGGTCGTCAATTCAGACTTCA
TTTCAAAGGAGCTACCGACCCAGCCTGTACTGTCAAAAGCGATGCCGGAG
CTGATGGAGCCTTAGCAATCACCTCAAATTACAATGCTTGTGGAATCGTT
CTTGCTGTCAACGCTGGAGAAGTCTCCTACAGCCAAACTGTCTTGGTTAC
TTATGGAAAGACACCAAACAGCTTTGTTCAACGTGAAGAAGTCATCTCTT
TCGAAGTCTCCTGCAACGTTGATGCTGCAGTTGCAGTTGGACTTGCCGGA
GCTGGACACGTCAATGTCTCAAGCTTGGAAGAGCAAACTATTTCCAAATc
gGAAGCCAGCGAGTTTGACATCAAATTGGTCAGAACCACCGACGGTTCTT
TCAGCTCTGAAGATTCATCCTCACAAATGCGATTGGGAGATCAAATGTAT
TTCAAACTTGAATTGAACACCATCCGTGATGACTTGAAAATCTCACCACA
AACTTGTTACGCTACCAGCACCGCTGACTCcgctgaaaaatatttcctcg
tTCAAGATGGATGCGTAAATGCTGCTGACGGAACCGTCAAAGTTACTGAA
ACTGACGACAAGACAGTTTACGAATGGGAAAATGAAGCTTTCCGATTTTT
CGGAGCATCTGATGCTGTTTACATCACATGTGAAGTCACCGTTTGTGAAT
CATCCAATGGCTCCACAGAATGCAACCGATGTGAAGCCACAACCCGTCGA
CGACGTGCTCTCTCCAAATCTGCCATCTACCGCTCCAAAGCTTACAGCAA
AATCTTCACTCTTGCTTAGATTTGATGCTACTTTATAAAACTTAGAATAA
ACCCATTTTGTAATGcgttttgaatcttttttcaaaacgcACCTCGTTTT
TAATTTGTCTTTTAGCAATTGTGATTTACTAAATTATTTTTGCAATAGCT
TTGTATTGCTTTGTATTTACTAGGAGAAaatcttttgaagaatatgaaaa
atgaaagaaaaagtcaaT Run BLAST on NCBI protein sequence of TCONS_00059596-protein >TCONS_00059596-protein ID=TCONS_00059596-protein|Name=TCONS_00059596-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MKTAFVFVTLALAYASALTFGDADGKLTCGSNSMTVTLDKDKFDQHGRQF
RLHFKGATDPACTVKSDAGADGALAITSNYNACGIVLAVNAGEVSYSQTV
LVTYGKTPNSFVQREEVISFEVSCNVDAAVAVGLAGAGHVNVSSLEEQTI
SKSEASEFDIKLVRTTDGSFSSEDSSSQMRLGDQMYFKLELNTIRDDLKI
SPQTCYATSTADSAEKYFLVQDGCVNAADGTVKVTETDDKTVYEWENEAF
RFFGASDAVYITCEVTVCESSNGSTECNRCEATTRRRRALSKSAIYRSKA
YSKIFTLA Run BLAST on NCBI transcript from alignment at scaffold_329:451057..453382- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059596 ID=TCONS_00059596|Name=TCONS_00059596|organism=Clytia hemisphaerica|type=transcript|length=2326bp|location=Sequence derived from alignment at scaffold_329:451057..453382- (Clytia hemisphaerica)
CTCAATTCTTGGTTTTCATAAGCATATAATTCTTCTTTCGTGTGGGTTTT
AACATACGATATCTGTTTTTCACCACAAAAAAGAACAAAACACCTTGAAA
AACCGAACCATGGCTATCAATTTACGGGTGTGTTTTTGATATAACGGTTA
CACGNAGAACCATGGCTATCAATTTACGGGTGTGTTTTTAATATAACGGT
TACACGGTGTGTTTACACGTTGCAGTTTCACCAGAAAACCCCAAAGATCA
TATATTTGTGGTTATAAAAGAGTCCAAAAGTAGATCTTATTGTTCACCGT
TCTGGTATAAAAGCCCATCAGATTTGGAGTAAAATCATTGCAGTTTGTTT
TTGAGACCTTTCAAAGATAATCTGCAAAGAAACTCAACAATCATGAAGAC
CGCTTTCGTTTTCGTTACTTTAGCTTTGGCATATGCCTCAGCTTTGACAT
TCGGCGATGCTGGTAGGTTTAATATTTATGATAAACTTTCCATGTTGTAG
TCGTGTTGATATAATTGTGCACTACAAACACTTTAGCGTTTTCTTATTTA
TGGTAGAATTGCTATTTTTTTCTCATTTTGGTTGATTTGTAAATCAGTAT
CACCAGAGTTTAAAGATCCTTTTCTTCTTGGATTTACTCATTAAATCTTA
CGTTATACACATTTCTTTGATGCTAATCTTTTTTCATTTCAGATGGAAAA
TTGACCTGTGGATCGAACAGCATGACTGTCACTTTGGACAAAGATAAATT
CGACCAACACGGTCGTCAATTCAGACTTCATTTCAAAGGAGCTACCGACC
CAGCCTGTACTGTCAAAAGCGATGCCGGAGCTGATGGAGCCTTAGCAATC
ACCTCAAATTACAATGCTTGTGGAATCGTTCTTGCTGTCAACGCTGGAGA
AGTCTCCTACAGCCAAACTGTCTTGGTTACTTATGGAAAGACACCAAACA
GCTTTGTTCAACGTGAAGAAGTCATCTCTTTCGAAGTCTCCTGCAACGTT
GATGCTGCAGTTGCAGTTGGACTTGCCGGAGCTGGACACGTCAATGTCTC
AAGCTTGGAAGAGCAAACTATTTCCAAATGTAAGCAACCACGTTTTTATC
TATTACATTGAAACAACAAAAGGTTTTTAGCTCATTTTAAAGTTTAAAAT
TGAAGTTTTGATTTACAAGTATATGGTTTTAAAGTTTTTATCGGGAGTAT
GTCCTAACTTTCATCATACAAACTTTTTAAAATTTTAGCGGAAGCAAGCG
AGTTTGACATCAAATTGGTCAGAACCACCGACGGTTCTTTCAGCTCTGAA
GATTCATCCTCACNGGAGTATGTCCTAACTTTCATCATACAAACTTTTTA
AAATTTTAGCGGAAGCCAGCGAGTTTGACATCAAATTGGTCAGAACCACC
GACGGTTCTTTCAGCTCTGAAGATTCATCCTCACAAATGCGATTGGGAGA
TCAAATGTATTTCAAACTTGAATTGAACACCATCCGTGATGACTTGAAAA
TCTCACCACAAACTTGTTACGCTACCAGCACCGCTGACTCCGCTGAAAAA
TATTTCCTCGTTCAAGATGGGTAAAGATTTTGTTTGTTTCGATCATCACA
ACTCTAAACACGATATACATCTTATTAATCATCTCCCCAAAAGTCGCGTA
GCAAATCCTTTTAGACGCAATCTTTTCAGCTCAATTGCCAACTTTTTTTC
CAAAAATGCCAAACCTAAAGAATAAAGTTTTTCTAATCATTGGCGTGATA
TTGTTTGAATACAGTGTTTAAGAACATCAAAGAGTTAAGATTCATATCTG
AGTACATTTGAACATTTCTAAGAGTAAATACGAATGAAGTTTTAGATTTT
TCGTCACTTTTCTTTCAGATGCGTAAATGCTGCTGACGGAACCGTCAAAG
TTACTGAAACTGACGACAAGACAGTTTACGAATGGGAAAATGAAGCTTTC
CGATTTTTCGGAGCATCTGATGCTGTTTACATCACATGTGAAGTCACCGT
TTGTGAATCATCCAATGGCTCCACAGAATGCAACCGATGTGAAGCCACAA
CCCGTCGACGACGTGCTCTCTCCAAATCTGCCATCTACCGCTCCAAAGCT
TACAGCAAAATCTTCACTCTTGCTTAGATTTGATGCTACTTTATAAAACT
TAGAATAAACCCATTTTGTAATGCGTTTTGAATCTTTTTTCAAAACGCAC
CTCGTTTTTAATTTGTCTTTTAGCAATTGTGATTTACTAAATTATTTTTG
CAATAGCTTTGTATTGCTTTGTATTTACTAGGAGAAAATCTTTTGAAGAA
TATGAAAAATGAAAGAAAAAGTCAAT Coding sequence (CDS) from alignment at scaffold_329:451057..453382- >TCONS_00059596 ID=TCONS_00059596|Name=TCONS_00059596|organism=Clytia hemisphaerica|type=CDS|length=3708bp|location=Sequence derived from alignment at scaffold_329:451057..453382- (Clytia hemisphaerica)
ATGCGTAAATGCTGCTGACGGAACCGTCAAAGTTACTGAAACTGACGACA
AGACAGTTTACGAATGGGAAAATGAAGCTTTCCGATTTTTCGGAGCATCT
GATGCTGTTTACATCACATGTGAAGTCACCGTTTGTGAATCATCCAATGG
CTCCACAGAATGCAACCGATGTGAAGCCACAACCCGTCGACGACGTGCTC
TCTCCAAATCTGCCATCTACCGCTCCAAAGCTTACAGCAAAATCTTCACT
CTTGCTTAGCGGAAGCCAGCGAGTTTGACATCAAATTGGTCAGAACCACC
GACGGTTCTTTCAGCTCTGAAGATTCATCCTCACAAATGCGATTGGGAGA
TCAAATGTATTTCAAACTTGAATTGAACACCATCCGTGATGACTTGAAAA
TCTCACCACAAACTTGTTACGCTACCAGCACCGCTGACTCCGCTGAAAAA
TATTTCCTCGTTCAAGATGGATGGAAAATTGACCTGTGGATCGAACAGCA
TGACTGTCACTTTGGACAAAGATAAATTCGACCAACACGGTCGTCAATTC
AGACTTCATTTCAAAGGAGCTACCGACCCAGCCTGTACTGTCAAAAGCGA
TGCCGGAGCTGATGGAGCCTTAGCAATCACCTCAAATTACAATGCTTGTG
GAATCGTTCTTGCTGTCAACGCTGGAGAAGTCTCCTACAGCCAAACTGTC
TTGGTTACTTATGGAAAGACACCAAACAGCTTTGTTCAACGTGAAGAAGT
CATCTCTTTCGAAGTCTCCTGCAACGTTGATGCTGCAGTTGCAGTTGGAC
TTGCCGGAGCTGGACACGTCAATGTCTCAAGCTTGGAAGAGCAAACTATT
TCCAAATATGAAGACCGCTTTCGTTTTCGTTACTTTAGCTTTGGCATATG
CCTCAGCTTTGACATTCGGCGATGCTGATGCGTAAATGCTGCTGACGGAA
CCGTCAAAGTTACTGAAACTGACGACAAGACAGTTTACGAATGGGAAAAT
GAAGCTTTCCGATTTTTCGGAGCATCTGATGCTGTTTACATCACATGTGA
AGTCACCGTTTGTGAATCATCCAATGGCTCCACAGAATGCAACCGATGTG
AAGCCACAACCCGTCGACGACGTGCTCTCTCCAAATCTGCCATCTACCGC
TCCAAAGCTTACAGCAAAATCTTCACTCTTGCTTAGCGGAAGCCAGCGAG
TTTGACATCAAATTGGTCAGAACCACCGACGGTTCTTTCAGCTCTGAAGA
TTCATCCTCACAAATGCGATTGGGAGATCAAATGTATTTCAAACTTGAAT
TGAACACCATCCGTGATGACTTGAAAATCTCACCACAAACTTGTTACGCT
ACCAGCACCGCTGACTCCGCTGAAAAATATTTCCTCGTTCAAGATGGATG
GAAAATTGACCTGTGGATCGAACAGCATGACTGTCACTTTGGACAAAGAT
AAATTCGACCAACACGGTCGTCAATTCAGACTTCATTTCAAAGGAGCTAC
CGACCCAGCCTGTACTGTCAAAAGCGATGCCGGAGCTGATGGAGCCTTAG
CAATCACCTCAAATTACAATGCTTGTGGAATCGTTCTTGCTGTCAACGCT
GGAGAAGTCTCCTACAGCCAAACTGTCTTGGTTACTTATGGAAAGACACC
AAACAGCTTTGTTCAACGTGAAGAAGTCATCTCTTTCGAAGTCTCCTGCA
ACGTTGATGCTGCAGTTGCAGTTGGACTTGCCGGAGCTGGACACGTCAAT
GTCTCAAGCTTGGAAGAGCAAACTATTTCCAAATATGAAGACCGCTTTCG
TTTTCGTTACTTTAGCTTTGGCATATGCCTCAGCTTTGACATTCGGCGAT
GCTGATGCGTAAATGCTGCTGACGGAACCGTCAAAGTTACTGAAACTGAC
GACAAGACAGTTTACGAATGGGAAAATGAAGCTTTCCGATTTTTCGGAGC
ATCTGATGCTGTTTACATCACATGTGAAGTCACCGTTTGTGAATCATCCA
ATGGCTCCACAGAATGCAACCGATGTGAAGCCACAACCCGTCGACGACGT
GCTCTCTCCAAATCTGCCATCTACCGCTCCAAAGCTTACAGCAAAATCTT
CACTCTTGCTTAGCGGAAGCCAGCGAGTTTGACATCAAATTGGTCAGAAC
CACCGACGGTTCTTTCAGCTCTGAAGATTCATCCTCACAAATGCGATTGG
GAGATCAAATGTATTTCAAACTTGAATTGAACACCATCCGTGATGACTTG
AAAATCTCACCACAAACTTGTTACGCTACCAGCACCGCTGACTCCGCTGA
AAAATATTTCCTCGTTCAAGATGGATGGAAAATTGACCTGTGGATCGAAC
AGCATGACTGTCACTTTGGACAAAGATAAATTCGACCAACACGGTCGTCA
ATTCAGACTTCATTTCAAAGGAGCTACCGACCCAGCCTGTACTGTCAAAA
GCGATGCCGGAGCTGATGGAGCCTTAGCAATCACCTCAAATTACAATGCT
TGTGGAATCGTTCTTGCTGTCAACGCTGGAGAAGTCTCCTACAGCCAAAC
TGTCTTGGTTACTTATGGAAAGACACCAAACAGCTTTGTTCAACGTGAAG
AAGTCATCTCTTTCGAAGTCTCCTGCAACGTTGATGCTGCAGTTGCAGTT
GGACTTGCCGGAGCTGGACACGTCAATGTCTCAAGCTTGGAAGAGCAAAC
TATTTCCAAATATGAAGACCGCTTTCGTTTTCGTTACTTTAGCTTTGGCA
TATGCCTCAGCTTTGACATTCGGCGATGCTGATGCGTAAATGCTGCTGAC
GGAACCGTCAAAGTTACTGAAACTGACGACAAGACAGTTTACGAATGGGA
AAATGAAGCTTTCCGATTTTTCGGAGCATCTGATGCTGTTTACATCACAT
GTGAAGTCACCGTTTGTGAATCATCCAATGGCTCCACAGAATGCAACCGA
TGTGAAGCCACAACCCGTCGACGACGTGCTCTCTCCAAATCTGCCATCTA
CCGCTCCAAAGCTTACAGCAAAATCTTCACTCTTGCTTAGCGGAAGCCAG
CGAGTTTGACATCAAATTGGTCAGAACCACCGACGGTTCTTTCAGCTCTG
AAGATTCATCCTCACAAATGCGATTGGGAGATCAAATGTATTTCAAACTT
GAATTGAACACCATCCGTGATGACTTGAAAATCTCACCACAAACTTGTTA
CGCTACCAGCACCGCTGACTCCGCTGAAAAATATTTCCTCGTTCAAGATG
GATGGAAAATTGACCTGTGGATCGAACAGCATGACTGTCACTTTGGACAA
AGATAAATTCGACCAACACGGTCGTCAATTCAGACTTCATTTCAAAGGAG
CTACCGACCCAGCCTGTACTGTCAAAAGCGATGCCGGAGCTGATGGAGCC
TTAGCAATCACCTCAAATTACAATGCTTGTGGAATCGTTCTTGCTGTCAA
CGCTGGAGAAGTCTCCTACAGCCAAACTGTCTTGGTTACTTATGGAAAGA
CACCAAACAGCTTTGTTCAACGTGAAGAAGTCATCTCTTTCGAAGTCTCC
TGCAACGTTGATGCTGCAGTTGCAGTTGGACTTGCCGGAGCTGGACACGT
CAATGTCTCAAGCTTGGAAGAGCAAACTATTTCCAAATATGAAGACCGCT
TTCGTTTTCGTTACTTTAGCTTTGGCATATGCCTCAGCTTTGACATTCGG
CGATGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059596-exon-scaffold_329-1575043694:452921..453382 | TCONS_00059596-exon-scaffold_329-1575043694:452921..453382 | Clytia hemisphaerica | exon |
| TCONS_00059596-exon-scaffold_329-1575043694:452304..452690 | TCONS_00059596-exon-scaffold_329-1575043694:452304..452690 | Clytia hemisphaerica | exon |
| TCONS_00059596-exon-scaffold_329-1575043694:451813..452023 | TCONS_00059596-exon-scaffold_329-1575043694:451813..452023 | Clytia hemisphaerica | exon |
| TCONS_00059596-exon-scaffold_329-1575043694:451057..451514 | TCONS_00059596-exon-scaffold_329-1575043694:451057..451514 | Clytia hemisphaerica | exon |
| TCONS_00059596-exon-scaffold_329-1510915933:452921..453382 | TCONS_00059596-exon-scaffold_329-1510915933:452921..453382 | Clytia hemisphaerica | exon |
| TCONS_00059596-exon-scaffold_329-1510915933:452304..452690 | TCONS_00059596-exon-scaffold_329-1510915933:452304..452690 | Clytia hemisphaerica | exon |
| TCONS_00059596-exon-scaffold_329-1510915933:451813..452023 | TCONS_00059596-exon-scaffold_329-1510915933:451813..452023 | Clytia hemisphaerica | exon |
| TCONS_00059596-exon-scaffold_329-1510915933:451057..451514 | TCONS_00059596-exon-scaffold_329-1510915933:451057..451514 | Clytia hemisphaerica | exon |
| TCONS_00059596-exon-scaffold_329-1491911889:452921..453382 | TCONS_00059596-exon-scaffold_329-1491911889:452921..453382 | Clytia hemisphaerica | exon |
| TCONS_00059596-exon-scaffold_329-1491911889:452304..452690 | TCONS_00059596-exon-scaffold_329-1491911889:452304..452690 | Clytia hemisphaerica | exon |
| TCONS_00059596-exon-scaffold_329-1491911889:451813..452023 | TCONS_00059596-exon-scaffold_329-1491911889:451813..452023 | Clytia hemisphaerica | exon |
| TCONS_00059596-exon-scaffold_329-1491911889:451057..451514 | TCONS_00059596-exon-scaffold_329-1491911889:451057..451514 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:451057..453382 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001507 | ZP_dom |
Blast
The following BLAST results are available for this feature:
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