TCONS_00059597 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059597
Unique NameTCONS_00059597
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059597 ID=TCONS_00059597|Name=TCONS_00059597|organism=Clytia hemisphaerica|type=transcript|length=1876bp
GTGCACCATAACCATACTCCTAAATAGAAATTTGGTATCTAGGAACTCCA
AAAGAGGGTCCTGTCATTAATAATTTCGTGATCCCTGCTCCTCGAAGTTT
GGGTGTCAAATTATATTTCAGTTTATATTTTAGTAAGATGAATTTTGGTA
TTATTTTGACGGCAACATTGGTGGCTGCAGTATTAGGCAGTGTTCCATTG
ACGCCACCCGAGAAATGTACACGCACGTGGAAAAAGATTGGTTGTTTTCA
CGATCGAATCATTCCCAACAGACCTTTACCGTACGAAGTAGCAAACCATC
GAGATCCAATAAACAAAAACTGGGATGGACATCTCATTAATTGGCAAAAA
TGGCCTGAATCACTCCATGCATTGGCTTGCAAATGTGCTGCTTTAACCAA
AGGCCGAGGACACCGATATTTTGGTCTTCAATTTTATGGAGAATGTTGGA
CCGGACCTTCCCTCCAATACGATCGTGACGGGCCATCTAAATCATGTATT
GGTATCGATTACAAAGCGTGCGAAGATAAATCACAAACTGAATGCGTCGG
AAAAGCTTTCACAAATTACATCTATGACACACATACTGATGTCGAAACGC
CAACAGACGGTGGTTGGTCAACATGGCAATCGTGGTCTTCATGCACCAAG
AGTTGTGGTGGAGGTGCACGTGAGCGTACTCGATCATGTACCAACCCTCG
TCCGTCCAATGGTGGTCAATCGTGTACTGGTGAAAAAGTTGAAGAATCAT
CCTGTAATACTGACACTTGTGTGCCAGTATGCAACAAGAATATTGATATT
GCTGTTATCACCGATGCTTCGACCAGTGTTACATCCAAAAATTATCTCAA
AGTCAAAGAATTCGTTGTCAAGCTCACTGAGGAGTTTCACGTCGGAAAAG
ATCAAACACATTTCGCTATGATTCATTTCGCGTGGCGTGCTTATTTGGAT
TTCAACTTTGCTGACAAGGAATTCTGGGATGTTTACAATTTGAGGAATAA
GATCATGAGCAGTAAATACACATATGGTGGTACCAGAACTGATTTAGCAT
TAAAGATGGCCGAAGAAAAAGTATTTTGTGATTCATGTGGAACACGTGGC
CCTAACGTACCAAAAGTGTTGATTGTGATTACAGATGGCAAAAGCAGCTA
TTCATCACAAACCATGACTGAGGCTAGCAAAGGATTAAAGGGCAAGAAAG
TGACCATTATTTCAATGGGAATTGGTCGAGCAATCGATAATGACGAATTA
GTTGAGATTGCCACTGATAGAGAACATGTCTTTGTGGCTGATGATTTCAA
ATACATGATTGATAAATTGAACAGTATCACAAGATTGTCTTGTCAAGCTC
AATACGATATCGATTCTTTCCGAATGATCGAATAAAGTACCTTCATTACC
GGACATGTAATATTTATCTTTCTTTAAATGttgtaaataaaaaagttgCT
CTTTGGATTatattaacagttttatgcaCTAGAAATACCGAACACTTTAA
ATCAACATATTTTGACACACCCATTGATATTAATCATTTGTTTAGAACGG
CAAGACTAGAACTCCGCTCTAATAGATgctatcggctttccgaattctcc
ccgaatgattacccatgatgcattgcgcaaaaaaattcacggacgatatt
gactttcggcgCAATGCATTATTGGTAATCATTCGGgaagaattcggaaa
gccgatatcgtctattattttttaatttcctcTTATTTTGCTCAAACTAC
GCGAGTCAACTCTTCGTAACATATATTATTAGATTGTCCCATCTACTGTG
TACTGTATAGGTTTATATTGACAgaacaaatttttaaatttgatccaAAT
TAAGAGAattcgtgaccctttgagag
Run BLAST on NCBI

protein sequence of TCONS_00059597-protein

>TCONS_00059597-protein ID=TCONS_00059597-protein|Name=TCONS_00059597-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MNFGIILTATLVAAVLGSVPLTPPEKCTRTWKKIGCFHDRIIPNRPLPYE
VANHRDPINKNWDGHLINWQKWPESLHALACKCAALTKGRGHRYFGLQFY
GECWTGPSLQYDRDGPSKSCIGIDYKACEDKSQTECVGKAFTNYIYDTHT
DVETPTDGGWSTWQSWSSCTKSCGGGARERTRSCTNPRPSNGGQSCTGEK
VEESSCNTDTCVPVCNKNIDIAVITDASTSVTSKNYLKVKEFVVKLTEEF
HVGKDQTHFAMIHFAWRAYLDFNFADKEFWDVYNLRNKIMSSKYTYGGTR
TDLALKMAEEKVFCDSCGTRGPNVPKVLIVITDGKSSYSSQTMTEASKGL
KGKKVTIISMGIGRAIDNDELVEIATDREHVFVADDFKYMIDKLNSITRL
SCQAQYDIDSFRMIE
Run BLAST on NCBI

transcript from alignment at scaffold_329:556776..563272-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059597 ID=TCONS_00059597|Name=TCONS_00059597|organism=Clytia hemisphaerica|type=transcript|length=6497bp|location=Sequence derived from alignment at scaffold_329:556776..563272- (Clytia hemisphaerica)
GTGCACCATAACCATACTCCTAAATAGAAATTTGGTATCTAGGAACTCCA
AAAGAGGGTCCTGTCATTAATAATTTCGTGATCCCTGCTCCTCGAAGTTT
GGGTGTCAAATTATATTTCAGTTTATATTTTAGTAAGATGAATTTTGGTA
TTATTTTGACGGCAACATTGGTGGCTGCAGTATTAGGTTTGTAAAATTAT
TCTAAGAATTTTGGTATATGATTTTTTGATCCTCAAAGTTTACGAGAACT
GACAAATGCGGAGCGTTCATTTTGACTATTTTTCTAACGAGCCTCTTCAT
AGCATCCTCCACAATGGTTAAAGGAGGCTTTGCCTAAAAATGGTAGCTGA
AAGTGTGAAATTTTTTTGAAAGCCTAGTATTCAGGTACGTCCATTTCAGC
ATTTTATTCCTAAGTTTGCGATAAACACACTTTTAATGTGTTTGTTGAAC
AACCATTAAAAGAGTGCTCAATACTCTTTCGTAGAGCAAATTCATAAAGT
TATATTTCAAAAAAAAAATTTTAATTAAAAAAAAATTATTTTTACATGGT
GATTTTTGAAATATAACTTTATGATAAACACACTATAATATTTTTCGGTT
TTCAGGCAGTGTTCCATTGACGCCACCCGAGAAATGTACACGCACGTGGA
AAAAGATTGGTTGTTTTCACGATCGAATCATTCCCAACAGACCTTTACCG
TACGAAGTAGCAAACCATCGAGATCCAATAAACAAAAACTGGGATGGACA
TCTCATTAATTGGCAAAAATGGCCTGAATCACTCCATGCGTAAGACCCCC
CTTTAGTTTCAACTTGATAACGAAAGAAAGAAAGTCATGATTACGTCATA
TTTATGATTTTCATGATGTAATTTTTTATGCGGAAGCATCCAAAATACTC
CGGGCGTTTGCCTCTAGTTTTATTATTTAACCCTTTAAGTGCCGATGTCG
TATATATCGGACATGGGCTATGAAGGAGGACAAAGCCCTCCTGTAATGCC
CAGTTTGAGTTAGAAATCGTCATTTTTGGTCTAACTCGTAGGAATTGGAT
TTGGTCAAGCAAAAACAAAATCAAAAGTGAGTCTTTTCGGCGAGATTTTC
AGCTAAAAAGTCAAAAAAATGCAAAAATTTGACAAAAATCCACTTTTTAA
AGATTTTGACCATATTTGGTCAACGAGTGATCCAAGAACCTCCAAATTTT
CCCCCGATTTACTTAATTCTGTCCTCCAGCGAATTAATCTAAAGTTTTAC
CACTGGGCACCTTTATATCATTCAGGCAGGTCCGCGCAGCGGCCAGAAAG
AGAAGACTCTAAGCTATCCATCCAACGGACTATAAACAAGCTTCTAATTC
CTTCTAGTTCCGGAGATATAAGCCTTTAAAGTTTGAACTAGCGATTGTCT
TTAAAAAAATTAAAGGGTTAAATAAGCAATGGGTCTTTTTGGCTACTTCG
GTATATATTATTCTGCCATGAATTATCCTTTGAAACTACTAGTTTAATCG
TTAATCTTTCACAGTTCTGGTTGGAATTAGGAATTCAACAGAACTTTATG
TACCTAGTAGGAGAATGTTTTCTCAACATCTTCGTACTTCTCTATTAAAA
AGATTGGCTTGCAAATGTGCTGCTTTAACCAAAGGCCGAGGACACCGATA
TTTTGGTCTTCAATTTTATGGAGAATGTTGGACCGGACCTTCCCTCCAAT
ACGATCGTGACGGGCCATCTAAATCATGTATTGGTATCGATTACAAAGCG
TGCGAAGATAAATCACAAACTGAATGCGTCGGAAAAGCTTTCACAAATTA
CATCTATGACACACATACTGATGGTAAGTTGGGTGGTTATTTTACCGAAC
ACCGGAATTCTCTTTAATTTGATCGATTGTTCCTCGGTTTGTGGAAGGAT
TATCAAGTTAAAATAGGAAAAGTCTAACGCATGGTGTTGTCTAGACATTT
TTAACCATTCACCAGATTGCTGAATTTTTGGTTAATGACGGGTTATTCTC
TGATTATACTTCTTGTAATTATTTAAAACTCTGATTGGCTGAGACGGGTA
AATTCAGAAGTCAGGGCATTTAAGAAATTATATGTTAATAAATAATGTAC
TCTTCTTTAGCCAGTCAGAACTTTAGCGCACAGCTATACGCAAAACACAA
AGAGGAATGAATACGTAAAGGTGGTACAGTCACTTTCGGTCGGGGTTGTG
GATGGTGAAATTTGTCGTTATTTTTTAAATGTTGTGAAGTAGGCACTTTC
TCGCCCTCATAGAACAAAATCTGATATTTCTTCTCTCTTCTAGTCGAAAC
GCCAACAGACGGTGGTTGGTCAACATGGCAATCGTGGTCTTCATGCACCA
AGAGTTGTGGTGGAGGTGCACGTGAGCGTACTCGATCATGTACCAACCCT
CGTCCGTCCAATGGTGGTCAATCGTGTACTGGTGAAAAAGTTGAAGAATC
ATCCTGTAATACTGACACTTGTGTGCCAGGTGAGTGACTTTTATTATTTT
AAATTGTTCGTGCAGTGTTAGAAAAAACGAAAAATGACTACTCTGGAATT
GACAGTGATGCTTTACAATGACCAAAGCTCTTGTCAGAAACATTTCTTTT
CAAAGAGTGCTAAATGATATTTCCATCCAAAAATCATCGAAAAGAAATAA
AGATTCACATATACTATCGGGGGTCCTAAAGGTTTGCTCTCTACTATAAT
GGATAGTATCTTTTATGCATAGCCTGATTCAGCAAATTCAAATTCAGTGT
GTCCCAAAAGTGTGTTACATATCAATTGTTTCATTGAAATATGTTATTTC
ATTTAGTATGCAACAAGAATATTGATATTGCTGTTATCACCGATGCTTCG
ACCAGTGTTACATCCAAAAATTATCTCAAAGTCAAAGAATTCGTTGTCAA
GCTCACTGAGGAGTTTCACGTCGGAAAAGATCAAACACATTTCGCTATGA
TTCATTTCGCGTGGCGTGCTTATTTGGATTTCAACTTTGCTGACAAGGAA
TTCTGGGATGTTTACAATTTGAGGAATAAGATCATGAGCAGTAAATACAC
ATATGGTAAGCAAGATGTCTTCTTTTAGGTTATCAGTAAGGAGTTGAACC
GTAGGGAGTCACGACCATTGCGTTTGATTCCTCTATAGAGAAATCTTTAA
CCTTTCCCAAGAATGAAAAAGCCCTAACATTGAATCTAGCCTTTTTCTTT
GTTTTCGCGTGACATTTTAATATTCAAAATCTGGCGATTTTACTTTCAAT
CTAGCGTTTGTGTAAAAACCACTTGGGCTACGCGTTTTGGATGGGTAATA
AGTGGCTTCATTTCCCAACCAGGAGTTTTGGTTTCTAACCCAATCGGGAC
TTTGAAGTCAATGGTCATGACATCACTCATTTGACTAAACCGTATGCGGT
TAGTTCGAAAGTAAAGGTGATGCTTGGGGTTACCAGTGTTGTAGTAGCCA
TCAAAAAAAGTAATTCTTGTATCGTCTATTTAGGTTGATAAATCGATGTC
CACTTTAAAGTTCTCGGATGTTATAAGAGGTTACCGGTTTTAGATTTAGT
CATTCTTGTCGAAATCTATGGGTTTAAATCTCTATCTTAGAAACGCGAAA
ACCGATTCCTGGAAATAGAAATTCTTTCTGAAGCCAAGCTTTATAGGTTG
TTTAACATTCCTTTACATAGAGATAACTACTTGTGAGGTGATCTTTGCTG
ACTCCAAATATCAATTTTCCTTTTTGCAGGTGGTACCAGAACTGATTTAG
CATTAAAGATGGCCGAAGAAAAAGTATTTTGTGATTCATGTGGAACACGT
GGCCCTAACGTACCAAAAGTGTTGATTGTGATTACAGATGGCAAAAGCAG
CTATTCATCACAAACCATGACTGAGGCTAGCAAAGGATTAAAGGTATAAT
GGTTCATCGTTTCATTTAAAGAGTATTTAAAAGGGCTGATTTGATTTAGC
CTGTAATATGAAATAGTGGTTTTTTAGTGCTTAAAAGTATGGTTGGAAAG
AAGAGTTTTAACTCTAGCTTAAGCTTTAAATCCTGATAAACGTTACAATA
CCCAAAATTGTCAATATATTTCGACTGTGATTATAGTTATTTGTAAATTC
ATTCATTCATTCATTCACTCATTCCTACAGGGCAAGAAAGTGACCATTAT
TTCAATGGGAATTGGTCGAGCAATCGATAATGACGAATTAGTTGAGATTG
CCACTGATAGAGAACATGTCTTTGTGGCTGATGATTTCAAATACATGATT
GATAAATTGAACAGTATCACAAGATTGTCTTGTCAAGCTCGTAAGTAAAA
CCTTTATCTGGTACTCGATGTAGAAATTTTCTTCCGACACGCTAAAGCTC
TGAAGGTCGGGAAAATTTTAACATCTGGAACCTTTGGGTTACCATTTTTC
ATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATTTTTCTGTAAG
GTTTCTCAGGCAGCAGAGATTTTCATGCTAAATTCAGTCGGGTGCAACCG
ATAGTCAAGCAAAAAGTGTAAGGACAGCTAGACAATACTGTGATGCGGTA
CATCAAACGATGATTACTATAGGTCTCCGATGGTGATATTGGCCCGCTCC
TTCAGAGCTTTAGCGTTGGCGGCCGCCAATACACCATCGGAATATCAGAT
AAGTGAAACCTTTAAAATGTTATATCATTGGCGATCCAAAAAGTATCAGC
AATCTGATTGGTTAAAAAAGAGTACAATATATCTTGTATTTTACATGTAC
AAAAATAAATTGACGTAAAGATGTTGTTGCATTGTAGCGGTTAAAAGCAA
TCTAACGTCACTTTGCTACCAAGGTGCTCTGCGTTTTTTCCAACACAAAA
AGTTCATTTTTTAGGTCACCGATAAACCAGTTATCAGACATTTGCTCGTA
CAATATGGAAATATTTTACTCGTTCCGGATTTTTCGTATATTAAAATATT
GTACGGAAAAATCTCAGAACTTGTAAAATTATTTCTCATATTGTACTCGC
AATTGTCCGATAACTATTATTACATATTGTTGAATAGAAATTTGGAAAGA
TTGTATTCACGGGAATCGGGAAATTTTCGTGTTTGGTTAAATTTAACCAA
TATACGAAGTCCCAGACTTCAGGCTATAACTCTTGACAACTTTATTTAAA
GCGGCATATACAGAATGCTTCGAGAACCCGGGGGGGGGGGGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCC
CCGGGTTCGAGAAAGAGTATAAAAATACAAATACGAAAATTTTCAAAAAA
TATTCCGCGCTGGAAAGGAAAGTAAGTCTCCTTTCTCCCGTTAATGATAC
CCGATATTGCCAATATTCCAGGAAAAAAATAATTACAAATTTCAATCATG
TATCCTTTTTCTTGTTTACAGAATACGATATCGATTCTTTCCGAATGATC
GAATAAAGTACCTTCATTACCGGACATGTAATATTTATCTTTCTTTAAAT
GTTGTAAATAAAAAAGTTGCTCTTTGGATTATATTAACAGTTTTATGCAC
TAGAAATACCGAACACTTTAAATCAACATATTTTGACACACCCATTGATA
TTAATCATTTGTTTAGAACGGCAAGACTAGAACTCCGCTCTAATAGATGC
TATCGGCTTTCCGAATTCTCCCCGAATGATTACCCATGATGCATTGCGCA
AAAAAATTCACGGACGATATTGACTTTCGGCGCAATGCATTATTGGTAAT
CATTCGGGAAGAATTCGGAAAGCCGATATCGTCTATTATTTTTTAATTTC
CTCTTATTTTGCTCAAACTACGCGAGTCAACTCTTCGTAACATATATTAT
TAGATTGTCCCATCTACTGTGTACTGTATAGGTTTATATTGACAGAACAA
ATTTTTAAATTTGATCCAAATTAAGAGAATTCGTGACCCTTTGAGAG

Coding sequence (CDS) from alignment at scaffold_329:556776..563272-

>TCONS_00059597 ID=TCONS_00059597|Name=TCONS_00059597|organism=Clytia hemisphaerica|type=CDS|length=9984bp|location=Sequence derived from alignment at scaffold_329:556776..563272- (Clytia hemisphaerica)
AATACGATATCGATTCTTTCCGAATGATCGAATAAGGCAAGAAAGTGACC
ATTATTTCAATGGGAATTGGTCGAGCAATCGATAATGACGAATTAGTTGA
GATTGCCACTGATAGAGAACATGTCTTTGTGGCTGATGATTTCAAATACA
TGATTGATAAATTGAACAGTATCACAAGATTGTCTTGTCAAGCTCGTGGT
ACCAGAACTGATTTAGCATTAAAGATGGCCGAAGAAAAAGTATTTTGTGA
TTCATGTGGAACACGTGGCCCTAACGTACCAAAAGTGTTGATTGTGATTA
CAGATGGCAAAAGCAGCTATTCATCACAAACCATGACTGAGGCTAGCAAA
GGATTAAAGTATGCAACAAGAATATTGATATTGCTGTTATCACCGATGCT
TCGACCAGTGTTACATCCAAAAATTATCTCAAAGTCAAAGAATTCGTTGT
CAAGCTCACTGAGGAGTTTCACGTCGGAAAAGATCAAACACATTTCGCTA
TGATTCATTTCGCGTGGCGTGCTTATTTGGATTTCAACTTTGCTGACAAG
GAATTCTGGGATGTTTACAATTTGAGGAATAAGATCATGAGCAGTAAATA
CACATATGTCGAAACGCCAACAGACGGTGGTTGGTCAACATGGCAATCGT
GGTCTTCATGCACCAAGAGTTGTGGTGGAGGTGCACGTGAGCGTACTCGA
TCATGTACCAACCCTCGTCCGTCCAATGGTGGTCAATCGTGTACTGGTGA
AAAAGTTGAAGAATCATCCTGTAATACTGACACTTGTGTGCCAGATTGGC
TTGCAAATGTGCTGCTTTAACCAAAGGCCGAGGACACCGATATTTTGGTC
TTCAATTTTATGGAGAATGTTGGACCGGACCTTCCCTCCAATACGATCGT
GACGGGCCATCTAAATCATGTATTGGTATCGATTACAAAGCGTGCGAAGA
TAAATCACAAACTGAATGCGTCGGAAAAGCTTTCACAAATTACATCTATG
ACACACATACTGATGGCAGTGTTCCATTGACGCCACCCGAGAAATGTACA
CGCACGTGGAAAAAGATTGGTTGTTTTCACGATCGAATCATTCCCAACAG
ACCTTTACCGTACGAAGTAGCAAACCATCGAGATCCAATAAACAAAAACT
GGGATGGACATCTCATTAATTGGCAAAAATGGCCTGAATCACTCCATGCA
TGAATTTTGGTATTATTTTGACGGCAACATTGGTGGCTGCAGTATTAGAA
TACGATATCGATTCTTTCCGAATGATCGAATAAGGCAAGAAAGTGACCAT
TATTTCAATGGGAATTGGTCGAGCAATCGATAATGACGAATTAGTTGAGA
TTGCCACTGATAGAGAACATGTCTTTGTGGCTGATGATTTCAAATACATG
ATTGATAAATTGAACAGTATCACAAGATTGTCTTGTCAAGCTCGTGGTAC
CAGAACTGATTTAGCATTAAAGATGGCCGAAGAAAAAGTATTTTGTGATT
CATGTGGAACACGTGGCCCTAACGTACCAAAAGTGTTGATTGTGATTACA
GATGGCAAAAGCAGCTATTCATCACAAACCATGACTGAGGCTAGCAAAGG
ATTAAAGTATGCAACAAGAATATTGATATTGCTGTTATCACCGATGCTTC
GACCAGTGTTACATCCAAAAATTATCTCAAAGTCAAAGAATTCGTTGTCA
AGCTCACTGAGGAGTTTCACGTCGGAAAAGATCAAACACATTTCGCTATG
ATTCATTTCGCGTGGCGTGCTTATTTGGATTTCAACTTTGCTGACAAGGA
ATTCTGGGATGTTTACAATTTGAGGAATAAGATCATGAGCAGTAAATACA
CATATGTCGAAACGCCAACAGACGGTGGTTGGTCAACATGGCAATCGTGG
TCTTCATGCACCAAGAGTTGTGGTGGAGGTGCACGTGAGCGTACTCGATC
ATGTACCAACCCTCGTCCGTCCAATGGTGGTCAATCGTGTACTGGTGAAA
AAGTTGAAGAATCATCCTGTAATACTGACACTTGTGTGCCAGATTGGCTT
GCAAATGTGCTGCTTTAACCAAAGGCCGAGGACACCGATATTTTGGTCTT
CAATTTTATGGAGAATGTTGGACCGGACCTTCCCTCCAATACGATCGTGA
CGGGCCATCTAAATCATGTATTGGTATCGATTACAAAGCGTGCGAAGATA
AATCACAAACTGAATGCGTCGGAAAAGCTTTCACAAATTACATCTATGAC
ACACATACTGATGGCAGTGTTCCATTGACGCCACCCGAGAAATGTACACG
CACGTGGAAAAAGATTGGTTGTTTTCACGATCGAATCATTCCCAACAGAC
CTTTACCGTACGAAGTAGCAAACCATCGAGATCCAATAAACAAAAACTGG
GATGGACATCTCATTAATTGGCAAAAATGGCCTGAATCACTCCATGCATG
AATTTTGGTATTATTTTGACGGCAACATTGGTGGCTGCAGTATTAGAATA
CGATATCGATTCTTTCCGAATGATCGAATAAGGCAAGAAAGTGACCATTA
TTTCAATGGGAATTGGTCGAGCAATCGATAATGACGAATTAGTTGAGATT
GCCACTGATAGAGAACATGTCTTTGTGGCTGATGATTTCAAATACATGAT
TGATAAATTGAACAGTATCACAAGATTGTCTTGTCAAGCTCGTGGTACCA
GAACTGATTTAGCATTAAAGATGGCCGAAGAAAAAGTATTTTGTGATTCA
TGTGGAACACGTGGCCCTAACGTACCAAAAGTGTTGATTGTGATTACAGA
TGGCAAAAGCAGCTATTCATCACAAACCATGACTGAGGCTAGCAAAGGAT
TAAAGTATGCAACAAGAATATTGATATTGCTGTTATCACCGATGCTTCGA
CCAGTGTTACATCCAAAAATTATCTCAAAGTCAAAGAATTCGTTGTCAAG
CTCACTGAGGAGTTTCACGTCGGAAAAGATCAAACACATTTCGCTATGAT
TCATTTCGCGTGGCGTGCTTATTTGGATTTCAACTTTGCTGACAAGGAAT
TCTGGGATGTTTACAATTTGAGGAATAAGATCATGAGCAGTAAATACACA
TATGTCGAAACGCCAACAGACGGTGGTTGGTCAACATGGCAATCGTGGTC
TTCATGCACCAAGAGTTGTGGTGGAGGTGCACGTGAGCGTACTCGATCAT
GTACCAACCCTCGTCCGTCCAATGGTGGTCAATCGTGTACTGGTGAAAAA
GTTGAAGAATCATCCTGTAATACTGACACTTGTGTGCCAGATTGGCTTGC
AAATGTGCTGCTTTAACCAAAGGCCGAGGACACCGATATTTTGGTCTTCA
ATTTTATGGAGAATGTTGGACCGGACCTTCCCTCCAATACGATCGTGACG
GGCCATCTAAATCATGTATTGGTATCGATTACAAAGCGTGCGAAGATAAA
TCACAAACTGAATGCGTCGGAAAAGCTTTCACAAATTACATCTATGACAC
ACATACTGATGGCAGTGTTCCATTGACGCCACCCGAGAAATGTACACGCA
CGTGGAAAAAGATTGGTTGTTTTCACGATCGAATCATTCCCAACAGACCT
TTACCGTACGAAGTAGCAAACCATCGAGATCCAATAAACAAAAACTGGGA
TGGACATCTCATTAATTGGCAAAAATGGCCTGAATCACTCCATGCATGAA
TTTTGGTATTATTTTGACGGCAACATTGGTGGCTGCAGTATTAGAATACG
ATATCGATTCTTTCCGAATGATCGAATAAGGCAAGAAAGTGACCATTATT
TCAATGGGAATTGGTCGAGCAATCGATAATGACGAATTAGTTGAGATTGC
CACTGATAGAGAACATGTCTTTGTGGCTGATGATTTCAAATACATGATTG
ATAAATTGAACAGTATCACAAGATTGTCTTGTCAAGCTCGTGGTACCAGA
ACTGATTTAGCATTAAAGATGGCCGAAGAAAAAGTATTTTGTGATTCATG
TGGAACACGTGGCCCTAACGTACCAAAAGTGTTGATTGTGATTACAGATG
GCAAAAGCAGCTATTCATCACAAACCATGACTGAGGCTAGCAAAGGATTA
AAGTATGCAACAAGAATATTGATATTGCTGTTATCACCGATGCTTCGACC
AGTGTTACATCCAAAAATTATCTCAAAGTCAAAGAATTCGTTGTCAAGCT
CACTGAGGAGTTTCACGTCGGAAAAGATCAAACACATTTCGCTATGATTC
ATTTCGCGTGGCGTGCTTATTTGGATTTCAACTTTGCTGACAAGGAATTC
TGGGATGTTTACAATTTGAGGAATAAGATCATGAGCAGTAAATACACATA
TGTCGAAACGCCAACAGACGGTGGTTGGTCAACATGGCAATCGTGGTCTT
CATGCACCAAGAGTTGTGGTGGAGGTGCACGTGAGCGTACTCGATCATGT
ACCAACCCTCGTCCGTCCAATGGTGGTCAATCGTGTACTGGTGAAAAAGT
TGAAGAATCATCCTGTAATACTGACACTTGTGTGCCAGATTGGCTTGCAA
ATGTGCTGCTTTAACCAAAGGCCGAGGACACCGATATTTTGGTCTTCAAT
TTTATGGAGAATGTTGGACCGGACCTTCCCTCCAATACGATCGTGACGGG
CCATCTAAATCATGTATTGGTATCGATTACAAAGCGTGCGAAGATAAATC
ACAAACTGAATGCGTCGGAAAAGCTTTCACAAATTACATCTATGACACAC
ATACTGATGGCAGTGTTCCATTGACGCCACCCGAGAAATGTACACGCACG
TGGAAAAAGATTGGTTGTTTTCACGATCGAATCATTCCCAACAGACCTTT
ACCGTACGAAGTAGCAAACCATCGAGATCCAATAAACAAAAACTGGGATG
GACATCTCATTAATTGGCAAAAATGGCCTGAATCACTCCATGCATGAATT
TTGGTATTATTTTGACGGCAACATTGGTGGCTGCAGTATTAGAATACGAT
ATCGATTCTTTCCGAATGATCGAATAAGGCAAGAAAGTGACCATTATTTC
AATGGGAATTGGTCGAGCAATCGATAATGACGAATTAGTTGAGATTGCCA
CTGATAGAGAACATGTCTTTGTGGCTGATGATTTCAAATACATGATTGAT
AAATTGAACAGTATCACAAGATTGTCTTGTCAAGCTCGTGGTACCAGAAC
TGATTTAGCATTAAAGATGGCCGAAGAAAAAGTATTTTGTGATTCATGTG
GAACACGTGGCCCTAACGTACCAAAAGTGTTGATTGTGATTACAGATGGC
AAAAGCAGCTATTCATCACAAACCATGACTGAGGCTAGCAAAGGATTAAA
GTATGCAACAAGAATATTGATATTGCTGTTATCACCGATGCTTCGACCAG
TGTTACATCCAAAAATTATCTCAAAGTCAAAGAATTCGTTGTCAAGCTCA
CTGAGGAGTTTCACGTCGGAAAAGATCAAACACATTTCGCTATGATTCAT
TTCGCGTGGCGTGCTTATTTGGATTTCAACTTTGCTGACAAGGAATTCTG
GGATGTTTACAATTTGAGGAATAAGATCATGAGCAGTAAATACACATATG
TCGAAACGCCAACAGACGGTGGTTGGTCAACATGGCAATCGTGGTCTTCA
TGCACCAAGAGTTGTGGTGGAGGTGCACGTGAGCGTACTCGATCATGTAC
CAACCCTCGTCCGTCCAATGGTGGTCAATCGTGTACTGGTGAAAAAGTTG
AAGAATCATCCTGTAATACTGACACTTGTGTGCCAGATTGGCTTGCAAAT
GTGCTGCTTTAACCAAAGGCCGAGGACACCGATATTTTGGTCTTCAATTT
TATGGAGAATGTTGGACCGGACCTTCCCTCCAATACGATCGTGACGGGCC
ATCTAAATCATGTATTGGTATCGATTACAAAGCGTGCGAAGATAAATCAC
AAACTGAATGCGTCGGAAAAGCTTTCACAAATTACATCTATGACACACAT
ACTGATGGCAGTGTTCCATTGACGCCACCCGAGAAATGTACACGCACGTG
GAAAAAGATTGGTTGTTTTCACGATCGAATCATTCCCAACAGACCTTTAC
CGTACGAAGTAGCAAACCATCGAGATCCAATAAACAAAAACTGGGATGGA
CATCTCATTAATTGGCAAAAATGGCCTGAATCACTCCATGCATGAATTTT
GGTATTATTTTGACGGCAACATTGGTGGCTGCAGTATTAGAATACGATAT
CGATTCTTTCCGAATGATCGAATAAGGCAAGAAAGTGACCATTATTTCAA
TGGGAATTGGTCGAGCAATCGATAATGACGAATTAGTTGAGATTGCCACT
GATAGAGAACATGTCTTTGTGGCTGATGATTTCAAATACATGATTGATAA
ATTGAACAGTATCACAAGATTGTCTTGTCAAGCTCGTGGTACCAGAACTG
ATTTAGCATTAAAGATGGCCGAAGAAAAAGTATTTTGTGATTCATGTGGA
ACACGTGGCCCTAACGTACCAAAAGTGTTGATTGTGATTACAGATGGCAA
AAGCAGCTATTCATCACAAACCATGACTGAGGCTAGCAAAGGATTAAAGT
ATGCAACAAGAATATTGATATTGCTGTTATCACCGATGCTTCGACCAGTG
TTACATCCAAAAATTATCTCAAAGTCAAAGAATTCGTTGTCAAGCTCACT
GAGGAGTTTCACGTCGGAAAAGATCAAACACATTTCGCTATGATTCATTT
CGCGTGGCGTGCTTATTTGGATTTCAACTTTGCTGACAAGGAATTCTGGG
ATGTTTACAATTTGAGGAATAAGATCATGAGCAGTAAATACACATATGTC
GAAACGCCAACAGACGGTGGTTGGTCAACATGGCAATCGTGGTCTTCATG
CACCAAGAGTTGTGGTGGAGGTGCACGTGAGCGTACTCGATCATGTACCA
ACCCTCGTCCGTCCAATGGTGGTCAATCGTGTACTGGTGAAAAAGTTGAA
GAATCATCCTGTAATACTGACACTTGTGTGCCAGATTGGCTTGCAAATGT
GCTGCTTTAACCAAAGGCCGAGGACACCGATATTTTGGTCTTCAATTTTA
TGGAGAATGTTGGACCGGACCTTCCCTCCAATACGATCGTGACGGGCCAT
CTAAATCATGTATTGGTATCGATTACAAAGCGTGCGAAGATAAATCACAA
ACTGAATGCGTCGGAAAAGCTTTCACAAATTACATCTATGACACACATAC
TGATGGCAGTGTTCCATTGACGCCACCCGAGAAATGTACACGCACGTGGA
AAAAGATTGGTTGTTTTCACGATCGAATCATTCCCAACAGACCTTTACCG
TACGAAGTAGCAAACCATCGAGATCCAATAAACAAAAACTGGGATGGACA
TCTCATTAATTGGCAAAAATGGCCTGAATCACTCCATGCATGAATTTTGG
TATTATTTTGACGGCAACATTGGTGGCTGCAGTATTAGAATACGATATCG
ATTCTTTCCGAATGATCGAATAAGGCAAGAAAGTGACCATTATTTCAATG
GGAATTGGTCGAGCAATCGATAATGACGAATTAGTTGAGATTGCCACTGA
TAGAGAACATGTCTTTGTGGCTGATGATTTCAAATACATGATTGATAAAT
TGAACAGTATCACAAGATTGTCTTGTCAAGCTCGTGGTACCAGAACTGAT
TTAGCATTAAAGATGGCCGAAGAAAAAGTATTTTGTGATTCATGTGGAAC
ACGTGGCCCTAACGTACCAAAAGTGTTGATTGTGATTACAGATGGCAAAA
GCAGCTATTCATCACAAACCATGACTGAGGCTAGCAAAGGATTAAAGTAT
GCAACAAGAATATTGATATTGCTGTTATCACCGATGCTTCGACCAGTGTT
ACATCCAAAAATTATCTCAAAGTCAAAGAATTCGTTGTCAAGCTCACTGA
GGAGTTTCACGTCGGAAAAGATCAAACACATTTCGCTATGATTCATTTCG
CGTGGCGTGCTTATTTGGATTTCAACTTTGCTGACAAGGAATTCTGGGAT
GTTTACAATTTGAGGAATAAGATCATGAGCAGTAAATACACATATGTCGA
AACGCCAACAGACGGTGGTTGGTCAACATGGCAATCGTGGTCTTCATGCA
CCAAGAGTTGTGGTGGAGGTGCACGTGAGCGTACTCGATCATGTACCAAC
CCTCGTCCGTCCAATGGTGGTCAATCGTGTACTGGTGAAAAAGTTGAAGA
ATCATCCTGTAATACTGACACTTGTGTGCCAGATTGGCTTGCAAATGTGC
TGCTTTAACCAAAGGCCGAGGACACCGATATTTTGGTCTTCAATTTTATG
GAGAATGTTGGACCGGACCTTCCCTCCAATACGATCGTGACGGGCCATCT
AAATCATGTATTGGTATCGATTACAAAGCGTGCGAAGATAAATCACAAAC
TGAATGCGTCGGAAAAGCTTTCACAAATTACATCTATGACACACATACTG
ATGGCAGTGTTCCATTGACGCCACCCGAGAAATGTACACGCACGTGGAAA
AAGATTGGTTGTTTTCACGATCGAATCATTCCCAACAGACCTTTACCGTA
CGAAGTAGCAAACCATCGAGATCCAATAAACAAAAACTGGGATGGACATC
TCATTAATTGGCAAAAATGGCCTGAATCACTCCATGCATGAATTTTGGTA
TTATTTTGACGGCAACATTGGTGGCTGCAGTATTAGAATACGATATCGAT
TCTTTCCGAATGATCGAATAAGGCAAGAAAGTGACCATTATTTCAATGGG
AATTGGTCGAGCAATCGATAATGACGAATTAGTTGAGATTGCCACTGATA
GAGAACATGTCTTTGTGGCTGATGATTTCAAATACATGATTGATAAATTG
AACAGTATCACAAGATTGTCTTGTCAAGCTCGTGGTACCAGAACTGATTT
AGCATTAAAGATGGCCGAAGAAAAAGTATTTTGTGATTCATGTGGAACAC
GTGGCCCTAACGTACCAAAAGTGTTGATTGTGATTACAGATGGCAAAAGC
AGCTATTCATCACAAACCATGACTGAGGCTAGCAAAGGATTAAAGTATGC
AACAAGAATATTGATATTGCTGTTATCACCGATGCTTCGACCAGTGTTAC
ATCCAAAAATTATCTCAAAGTCAAAGAATTCGTTGTCAAGCTCACTGAGG
AGTTTCACGTCGGAAAAGATCAAACACATTTCGCTATGATTCATTTCGCG
TGGCGTGCTTATTTGGATTTCAACTTTGCTGACAAGGAATTCTGGGATGT
TTACAATTTGAGGAATAAGATCATGAGCAGTAAATACACATATGTCGAAA
CGCCAACAGACGGTGGTTGGTCAACATGGCAATCGTGGTCTTCATGCACC
AAGAGTTGTGGTGGAGGTGCACGTGAGCGTACTCGATCATGTACCAACCC
TCGTCCGTCCAATGGTGGTCAATCGTGTACTGGTGAAAAAGTTGAAGAAT
CATCCTGTAATACTGACACTTGTGTGCCAGATTGGCTTGCAAATGTGCTG
CTTTAACCAAAGGCCGAGGACACCGATATTTTGGTCTTCAATTTTATGGA
GAATGTTGGACCGGACCTTCCCTCCAATACGATCGTGACGGGCCATCTAA
ATCATGTATTGGTATCGATTACAAAGCGTGCGAAGATAAATCACAAACTG
AATGCGTCGGAAAAGCTTTCACAAATTACATCTATGACACACATACTGAT
GGCAGTGTTCCATTGACGCCACCCGAGAAATGTACACGCACGTGGAAAAA
GATTGGTTGTTTTCACGATCGAATCATTCCCAACAGACCTTTACCGTACG
AAGTAGCAAACCATCGAGATCCAATAAACAAAAACTGGGATGGACATCTC
ATTAATTGGCAAAAATGGCCTGAATCACTCCATGCATGAATTTTGGTATT
ATTTTGACGGCAACATTGGTGGCTGCAGTATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037487XLOC_037487Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059597-exon-scaffold_329-1575043694:563087..563272TCONS_00059597-exon-scaffold_329-1575043694:563087..563272Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1575043694:562484..562667TCONS_00059597-exon-scaffold_329-1575043694:562484..562667Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1575043694:561450..561670TCONS_00059597-exon-scaffold_329-1575043694:561450..561670Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1575043694:560794..560979TCONS_00059597-exon-scaffold_329-1575043694:560794..560979Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1575043694:560218..560466TCONS_00059597-exon-scaffold_329-1575043694:560218..560466Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1575043694:559380..559543TCONS_00059597-exon-scaffold_329-1575043694:559380..559543Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1575043694:558983..559142TCONS_00059597-exon-scaffold_329-1575043694:558983..559142Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1575043694:556776..557301TCONS_00059597-exon-scaffold_329-1575043694:556776..557301Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1510915933:563087..563272TCONS_00059597-exon-scaffold_329-1510915933:563087..563272Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1510915933:562484..562667TCONS_00059597-exon-scaffold_329-1510915933:562484..562667Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1510915933:561450..561670TCONS_00059597-exon-scaffold_329-1510915933:561450..561670Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1510915933:560794..560979TCONS_00059597-exon-scaffold_329-1510915933:560794..560979Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1510915933:560218..560466TCONS_00059597-exon-scaffold_329-1510915933:560218..560466Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1510915933:559380..559543TCONS_00059597-exon-scaffold_329-1510915933:559380..559543Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1510915933:558983..559142TCONS_00059597-exon-scaffold_329-1510915933:558983..559142Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1510915933:556776..557301TCONS_00059597-exon-scaffold_329-1510915933:556776..557301Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1491911889:563087..563272TCONS_00059597-exon-scaffold_329-1491911889:563087..563272Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1491911889:562484..562667TCONS_00059597-exon-scaffold_329-1491911889:562484..562667Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1491911889:561450..561670TCONS_00059597-exon-scaffold_329-1491911889:561450..561670Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1491911889:560794..560979TCONS_00059597-exon-scaffold_329-1491911889:560794..560979Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1491911889:560218..560466TCONS_00059597-exon-scaffold_329-1491911889:560218..560466Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1491911889:559380..559543TCONS_00059597-exon-scaffold_329-1491911889:559380..559543Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1491911889:558983..559142TCONS_00059597-exon-scaffold_329-1491911889:558983..559142Clytia hemisphaericaexon
TCONS_00059597-exon-scaffold_329-1491911889:556776..557301TCONS_00059597-exon-scaffold_329-1491911889:556776..557301Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059597-proteinTCONS_00059597-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:556776..563272 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.364203	0.313007	0.267873	0.119547	0.31655	0.274104	0.410767	0.10427	0.054105	0.156479	0.393457	0.200277	36.3067	32.3366	0.169457	0.299132	3.24044	3.56801	148.461	171.195	14.786	14.8426	3.02301	5.01787	5.02215	5.31043	0.206888	0.126276	0.316211	0.0750515
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR000884TSP1_rpt
Blast
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BLAST of TCONS_00059597 vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.375e-17
Identity = 54/170 (31.76%), Postives = 89/170 (52.35%), Query Frame = 3 
Query:  795 DIAVITDASTSVTSKNYLKVKEFVVKLTEEFHVGKDQTHFAMIHFAWRAYLDFNFADKEFWDVYNLRNKIMSSKYTYGGTRTDLALKMAEEKVFCDSCGTRGPNVPKVLIVITDGKSSYSSQTMTEASKGLKGKKVTIISMGIGRAIDNDELVEIATD--REHVFVADDF 1298
            DI  + D S S+   N++KV+ F+  L + F +  ++   +++ ++   + +F    K+F  V ++   I +  Y  G T T  A+    EK+F  S G+R  NVPKV+I+ITDGK   SS    + +  L+   V I ++G+  A+   EL  IA+     HVF  +DF
Sbjct:  440 DIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTL--KKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRS-NVPKVMILITDGK---SSDAFRDPAIKLRNSDVEIFAVGVKDAV-RSELEAIASPPAETHVFTVEDF 602
The following BLAST results are available for this feature:
BLAST of TCONS_00059597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COCA11.375e-1731.76Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL... [more]
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