TCONS_00059622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059622
Unique NameTCONS_00059622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059622 ID=TCONS_00059622|Name=TCONS_00059622|organism=Clytia hemisphaerica|type=transcript|length=471bp
ATCGATTGTTGGGTATTATCTTGTGTGGATCTCTCAGTGGAAGTGGTAAG
TAGTAGTGTCCATCCTTGTATTCGATGTCTTTCATGATTTCGAGAAAGCG
TTTGTCGTCTTGAGACAGGGATATAAGCTGGCTGGATTCGTGGAAGTCTA
AGGTGGATGCCTTGATGATCATTTCCTTTAACGACAAATCTTTAAATGAC
TCTCTGACTTGAAAGTATTGATCGGTTCGATCTTGAACTTGAATTCGATG
ACAAGACGTGATTGATGAATTTGACTTGACTTGACCAGTGATGCACCAAC
CAAGTCGTGATCTGAAAGCAAATGGACCATTGTCTCGACTATGAACGATT
TCCATTGGTTCAAGAGCTTTGGGACAGTTTGACCCAATGAGTAATCAAAC
TTTTCCTCTGTTTTTAGGTAAGTGACTGGCGATTTGTTTGAGGTAAGGCC
ATGGTTGTAGCTGAGCGGGTG
Run BLAST on NCBI

protein sequence of TCONS_00059622-protein

>TCONS_00059622-protein ID=TCONS_00059622-protein|Name=TCONS_00059622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MEIVHSRDNGPFAFRSRLGWCITGQVKSNSSITSCHRIQVQDRTDQYFQV
RESFKDLSLKEMIIKASTLDFHESSQLISLSQDDKRFLEIMKDIEYKDGH
YYLPLPLRDPHKIIPNNR
Run BLAST on NCBI

transcript from alignment at scaffold_329:4280..4750

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059622 ID=TCONS_00059622|Name=TCONS_00059622|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at scaffold_329:4280..4750 (Clytia hemisphaerica)
CACCCGCTCAGCTACAACCATGGCCTTACCTCAAACAAATCGCCAGTCAC
TTACCTAAAAACAGAGGAAAAGTTTGATTACTCATTGGGTCAAACTGTCC
CAAAGCTCTTGAACCAATGGAAATCGTTCATAGTCGAGACAATGGTCCAT
TTGCTTTCAGATCACGACTTGGTTGGTGCATCACTGGTCAAGTCAAGTCA
AATTCATCAATCACGTCTTGTCATCGAATTCAAGTTCAAGATCGAACCGA
TCAATACTTTCAAGTCAGAGAGTCATTTAAAGATTTGTCGTTAAAGGAAA
TGATCATCAAGGCATCCACCTTAGACTTCCACGAATCCAGCCAGCTTATA
TCCCTGTCTCAAGACGACAAACGCTTTCTCGAAATCATGAAAGACATCGA
ATACAAGGATGGACACTACTACTTACCACTTCCACTGAGAGATCCACACA
AGATAATACCCAACAATCGAT

Coding sequence (CDS) from alignment at scaffold_329:4280..4750

>TCONS_00059622 ID=TCONS_00059622|Name=TCONS_00059622|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_329:4280..4750 (Clytia hemisphaerica)
ATGGAAATCGTTCATAGTCGAGACAATGGTCCATTTGCTTTCAGATCACG
ACTTGGTTGGTGCATCACTGGTCAAGTCAAGTCAAATTCATCAATCACGT
CTTGTCATCGAATTCAAGTTCAAGATCGAACCGATCAATACTTTCAAGTC
AGAGAGTCATTTAAAGATTTGTCGTTAAAGGAAATGATCATCAAGGCATC
CACCTTAGACTTCCACGAATCCAGCCAGCTTATATCCCTGTCTCAAGACG
ACAAACGCTTTCTCGAAATCATGAAAGACATCGAATACAAGGATGGACAC
TACTACTTACCACTTCCACTGAGAGATCCACACAAGATAATACCCAACAA
TCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037502XLOC_037502Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059622-proteinTCONS_00059622-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059622-exon-scaffold_329-1491911889:4280..4750TCONS_00059622-exon-scaffold_329-1491911889:4280..4750Clytia hemisphaericaexon
TCONS_00059622-exon-scaffold_329-1510915933:4280..4750TCONS_00059622-exon-scaffold_329-1510915933:4280..4750Clytia hemisphaericaexon
TCONS_00059622-exon-scaffold_329-1575043694:4280..4750TCONS_00059622-exon-scaffold_329-1575043694:4280..4750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:4280..4750 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.2525	0.708254	0.15332	0.449998	0.68274	0.288601	0.652454	1.9558	0.228217	2.40281	0.274379	0.414218	0.343905	0.173599	0	0.0825158	0.269375	0	0.143945	0.0904788	0	0	0.31052	0.141154	1.56822	0.381739	0.0841839	0	0.695614	0.660228
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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