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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059857 ID=TCONS_00059857|Name=TCONS_00059857|organism=Clytia hemisphaerica|type=transcript|length=671bp
AGCGAACTCAATAATTTTGCTTGTAAATTATTATAATCACACGCTCCTTT
TTTCAGCTATCCTAATATTAGAGGAAAAATTAAAACTACCACAAGAGCAT
TCAAACATTAGCAGGGTTTGTCTGCCGGACACTCGTGCACCTATCTCGGA
CGATCAAACATGTTATATTGTGGGTTATGGATTTACAACTTTCAATGGAA
ACAAATCTGATGATTTACGACATTCGAAGATTAATCTGGTACCAGTTGAT
ACTTGTAATCAAGCCAAATCTTTCAACAATACAGTAGACGAGAATATGAC
AATTTGTGCTGGTGACGGAACAGCCAAAATTAGTCCTTGTAATACTGATA
GTGGAGGTTCACTTGTTTGTCAAGCAAATGgAACTTGGTATGCTCAAGGG
ATTGTGTCAAGTGGGTATAAATGTGGAGGTCAAGACGCATACAGCTTATA
TACCagaatttcaaattataacGACTGGATtgcaaaagagatttttgaat
aTTATTCATCAAGTGGTAGAACTTTAAAACCTTGTGTATTGCTTATGATG
ATAATTTCTTATGCAACTTTTGTTTTCTTGAGATAAATCATGCATTGTTT
Tagctgaaattaattttggcgaatttcgtcaaaatttatttttaggcaaa
aattgACCCTTTCATTTCGGC Run BLAST on NCBI transcript from alignment at scaffold_331:1164810..1166184+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059857 ID=TCONS_00059857|Name=TCONS_00059857|organism=Clytia hemisphaerica|type=transcript|length=1375bp|location=Sequence derived from alignment at scaffold_331:1164810..1166184+ (Clytia hemisphaerica)
AGCGAACTCAATAATTTTGCTTGTAAATTATTATAATCACACGCTCCTTT
TTTCAGCTATCCTAATATTAGAGGAAAAATTAAAACTACCACAAGAGCAT
TCAAACATTAGCAGGGTTTGTCTGCCGGACACTCGTGCACCTATCTCGGA
CGATCAAACATGTTATATTGTGGGTTATGGATTTACAACTTTCAATGGAA
ACAAATCTGATGATTTACGACATTCGAAGATTAATCTGGTACCAGTTGAT
ACTTGTAATCAAGGTAattaattcttcttttctgctctttttcattttca
catgGACCTGGTGTATAGGCTCAGTGGCGCGCTCTGAAATCACAAGAAAA
CAACGTTACATCTAATGCGAATGTTAGATTGCTTGATGTTTTGTTGCCAA
TGGGTATACACCTCTGTCTCACTGCACCGGATCAAGCTTTTTCTCGCACT
GGGATGTAAATTCAATCGAAATGCAAAAGAGAGAGAGATATTATTCCCAG
CTCAAAAAATCCAATCGAAACGGTTTAGGattgtaatttttcatttagtt
TCAACGGAATTgttgagtatttttgccagagGCGAAATTTTGGCCAGATT
CTCAGTTGGGTtaggtcccaccgggtctgtgatacGGGAATGTCCTTTTT
GTAATAATGTCTTTAATAAACTTTGGGTTGTAACatctttgaaatttaaa
tgaagGGGGAGTTCAGTTTACCGTTAATCTTTTTCTATATCGCCTTACTT
TCCAGCCAAATCTTTCAACAATACAGTAGACGAGAATATGACAATTTGTG
CTGGTGACGGAACAGCCAAAATTAGTCCTTGTAATACTGATAGTGGAGGT
TCACTTGTTTGTCAAGCAAATGGTAAGACttttacatccctgtttcaaaC
TTGTTTTAGCGAGaaataattttggcgaatttgacGAGTTTAGAGAAAAT
TTGCagtagttctcgccaaaattaatcttTTTTGTAGTTTGACAAATTAA
CCCTTAAATTCAAAATAGctcaaataaggcaaaataggaCAGATTTAGAC
TCTCAcataatattaattttttttcaaatcttaggAACTTGGTATGCTCA
AGGGATTGTGTCAAGTGGGTATAAATGTGGAGGTCAAGACGCATACAGCT
TATATACCagaatttcaaattataacGACTGGATtgcaaaagagattttt
gaataTTATTCATCAAGTGGTAGAACTTTAAAACCTTGTGTATTGCTTAT
GATGATAATTTCTTATGCAACTTTTGTTTTCTTGAGATAAATCATGCATT
GTTTTagctgaaattaattttggcgaatttcgtcaaaatttatttttagg
caaaaattgACCCTTTCATTTCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059857-exon-scaffold_331-1491911889:1164810..1165072 | TCONS_00059857-exon-scaffold_331-1491911889:1164810..1165072 | Clytia hemisphaerica | exon |
| TCONS_00059857-exon-scaffold_331-1510915933:1164810..1165072 | TCONS_00059857-exon-scaffold_331-1510915933:1164810..1165072 | Clytia hemisphaerica | exon |
| TCONS_00059857-exon-scaffold_331-1575043694:1164810..1165072 | TCONS_00059857-exon-scaffold_331-1575043694:1164810..1165072 | Clytia hemisphaerica | exon |
| TCONS_00059857-exon-scaffold_331-1491911889:1165565..1165681 | TCONS_00059857-exon-scaffold_331-1491911889:1165565..1165681 | Clytia hemisphaerica | exon |
| TCONS_00059857-exon-scaffold_331-1510915933:1165565..1165681 | TCONS_00059857-exon-scaffold_331-1510915933:1165565..1165681 | Clytia hemisphaerica | exon |
| TCONS_00059857-exon-scaffold_331-1575043694:1165565..1165681 | TCONS_00059857-exon-scaffold_331-1575043694:1165565..1165681 | Clytia hemisphaerica | exon |
| TCONS_00059857-exon-scaffold_331-1491911889:1165894..1166184 | TCONS_00059857-exon-scaffold_331-1491911889:1165894..1166184 | Clytia hemisphaerica | exon |
| TCONS_00059857-exon-scaffold_331-1510915933:1165894..1166184 | TCONS_00059857-exon-scaffold_331-1510915933:1165894..1166184 | Clytia hemisphaerica | exon |
| TCONS_00059857-exon-scaffold_331-1575043694:1165894..1166184 | TCONS_00059857-exon-scaffold_331-1575043694:1165894..1166184 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:1164810..1166184 + |
Blast
BLAST of TCONS_00059857 vs. Swiss-Prot (Human)
Match: TM11F (Transmembrane protease serine 11F OS=Homo sapiens GN=TMPRSS11F PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 8.401e-23 Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 2
Query: 2 ANSIILLVNYYNHTLLFSAILILEEKLKLPQEHSNI-SRVCLPDTRAPISDDQTCYIVGYGFTTFNGNKSDDLRHSKINLVPVDTCNQAKSFNNTVDENMTICAGDGTAKISPCNTDSGGSLVCQANGTWYAQGIVSSGYKCGGQDAYSLYTRISNYNDWIAKE 490
IIL NY+ T L+ +L E SNI RVCLPD+ + + ++ G+G +G + LR +++ + D CN+ ++ + M +CAG KI C DSGG LV + WY GIVS G C +YTR++ Y DWIA +
Sbjct: 276 VRKIILHENYHRETNENDIALV---QLSTGVEFSNIVQRVCLPDSSIKLPPKTSVFVTGFGSIVDDGPIQNTLRQARVETISTDVCNRKDVYDGLITPGM-LCAGFMEGKIDACKGDSGGPLVYDNHDIWYIVGIVSWGQSCALPKKPGVYTRVTKYRDWIASK 435
The following BLAST results are available for this feature:
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