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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059858 ID=TCONS_00059858|Name=TCONS_00059858|organism=Clytia hemisphaerica|type=transcript|length=1236bp
AGCGAACTCAATAATTTTGCTTGTAAATTATTATAATCACACGCTCCTTT
TTTCAGCTATCCTAATATTAGAGGAAAAATTAAAACTACCACAAGAGCAT
TCAAACATTAGCAGGGTTTGTCTGCCGGACACTCGTGCACCTATCTCGGA
CGATCAAACATGTTATATTGTGGGTTATGGATTTACAACTTTCAATGGAA
ACAAATCTGATGATTTACGACATTCGAAGATTAATCTGGTACCAGTTGAT
ACTTGTAATCAAGCCAAATCTTTCAACAATACAGTAGACGAGAATATGAC
AATTTGTGCTGGTGACGGAACAGCCAAAATTAGTCCTTGTAATACTGATA
GTGGAGGTTCACTTGTTTGTCAAGCAAATGgAACTTGGTATGCTCAAGGG
ATTGTGTCAAGTGGGTATAAATGTGGAGGTCAAGACGCATACAGCTTATA
TACCagaatttcaaattataacGACTGGATtgcaaaagagatttttgaat
aTTATTCATCAAGTGGTAGAACTTTAAAACCTTGTGTATTGCTTATGATG
ATAATTTCTTATGtaacttttgttttcttgataTAAATCATGCATTGTTT
Tagctgaaattaattttggcgaatttcgtcaaaatttatttttaggcaaa
aattgACCCTTTCATTTCGTCATAATTagttttcgctaaaattaataAGG
CTACTCTCAAGATTatgaacaaaatttttgcttGGGTCTACTTTGTGGGC
CTTTATAGACATTCGATCGATTCTCAATATTTTTAATAACTATGATTTAT
CGAATTATCCTTCGAGCTGTAAGATTTGGACTACTTATTTGACAATTGTA
AATGTGAAattaaatttctgaaaataattAAACTTAACTAgattattata
ttttaaaatgagTAAGTTTTAATGTAAATAGATATATTAATCATTTAGGA
AAAATAGCTATAATCATCAAGtgtaaataaattgaaaaatggcaaaatga
gAGACTTGATAAAACTACGAAACATCAATCTACCGTCGTTTCAGCTTGTA
CTAATGCACTTTGTAATACACCttgacgcactttgtaatacctaacgcac
tttgtaatacaccttggcacactttgtaatacctaacgcactttgtaata
cacCTTGACACACATTGTAATAcctaacgcactttgtaatacaccttgac
acactttgtaatacctaacgcactttgtaatacacc Run BLAST on NCBI protein sequence of TCONS_00059858-protein >TCONS_00059858-protein ID=TCONS_00059858-protein|Name=TCONS_00059858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
ANSIILLVNYYNHTLLFSAILILEEKLKLPQEHSNISRVCLPDTRAPISD
DQTCYIVGYGFTTFNGNKSDDLRHSKINLVPVDTCNQAKSFNNTVDENMT
ICAGDGTAKISPCNTDSGGSLVCQANGTWYAQGIVSSGYKCGGQDAYSLY
TRISNYNDWIAKEIFEYYSSSGRTLKPCVLLMMIISYVTFVFLI Run BLAST on NCBI transcript from alignment at scaffold_331:1164810..1167132+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059858 ID=TCONS_00059858|Name=TCONS_00059858|organism=Clytia hemisphaerica|type=transcript|length=2323bp|location=Sequence derived from alignment at scaffold_331:1164810..1167132+ (Clytia hemisphaerica)
AGCGAACTCAATAATTTTGCTTGTAAATTATTATAATCACACGCTCCTTT
TTTCAGCTATCCTAATATTAGAGGAAAAATTAAAACTACCACAAGAGCAT
TCAAACATTAGCAGGGTTTGTCTGCCGGACACTCGTGCACCTATCTCGGA
CGATCAAACATGTTATATTGTGGGTTATGGATTTACAACTTTCAATGGAA
ACAAATCTGATGATTTACGACATTCGAAGATTAATCTGGTACCAGTTGAT
ACTTGTAATCAAGGTAattaattcttcttttctgctctttttcattttca
catgGACCTGGTGTATAGGCTCAGTGGCGCGCTCTGAAATCACAAGAAAA
CAACGTTACATCTAATGCGAATGTTAGATTGCTTGATGTTTTGTTGCCAA
TGGGTATACACCTCTGTCTCACTGCACCGGATCAAGCTTTTTCTCGCACT
GGGATGTAAATTCAATCGAAATGCAAAAGAGAGAGAGATATTATTCCCAG
CTCAAAAAATCCAATCGAAACGGTTTAGGattgtaatttttcatttagtt
TCAACGGAATTgttgagtatttttgccagagGCGAAATTTTGGCCAGATT
CTCAGTTGGGTtaggtcccaccgggtctgtgatacGGGAATGTCCTTTTT
GTAATAATGTCTTTAATAAACTTTGGGTTGTAACatctttgaaatttaaa
tgaagGGGGAGTTCAGTTTACCGTTAATCTTTTTCTATATCGCCTTACTT
TCCAGCCAAATCTTTCAACAATACAGTAGACGAGAATATGACAATTTGTG
CTGGTGACGGAACAGCCAAAATTAGTCCTTGTAATACTGATAGTGGAGGT
TCACTTGTTTGTCAAGCAAATGGTAAGACttttacatccctgtttcaaaC
TTGTTTTAGCGAGaaataattttggcgaatttgacGAGTTTAGAGAAAAT
TTGCagtagttctcgccaaaattaatcttTTTTGTAGTTTGACAAATTAA
CCCTTAAATTCAAAATAGctcaaataaggcaaaataggaCAGATTTAGAC
TCTCAcataatattaattttttttcaaatcttaggAACTTGGTATGCTCA
AGGGATTGTGTCAAGTGGGTATAAATGTGGAGGTCAAGACGCATACAGCT
TATATACCagaatttcaaattataacGACTGGATtgcaaaagagattttt
gaataTTATTCATCAAGTGGTAGAACTTTAAAACCTTGTGTATTGCTTAT
GATGATAATTTCTTATGCAACTTTTGTTTTCTTGAGATAAATCATGCATT
GTTTTagctgaaattaattttggcgaatttcgtcaaaatttatttttagg
caaaaattgACCCTTTCATTTCGGCATAATTAATTTTNAAATTCAAAATA
GctcaaataaggcaaaataggaCAGATTTAGACTCTCAcataatattaat
tttttttcaaatcttaggAACTTGGTATGCTCAAGGGATTGTGTCAAGTG
GGTATAAATGTGGAGGTCAAGACGCATACAGCTTATATACCagaatttca
aattataacGACTGGATtgcaaaagagatttttgaataTTATTCATCAAG
TGGTAGAACTTTAAAACCTTGTGTATTGCTTATGATGATAATTTCTTATG
taacttttgttttcttgataTAAATCATGCATTGTTTTagctgaaattaa
ttttggcgaatttcgtcaaaatttatttttaggcaaaaattgACCCTTTC
ATTTCGTCATAATTagttttcgctaaaattaataAGGCTACTCTCAAGAT
TatgaacaaaatttttgcttGGGTCTACTTTGTGGGCCTTTATAGACATT
CGATCGATTCTCAATATTTTTAATAACTATGATTTATCGAATTATCCTTC
GAGCTGTAAGATTTGGACTACTTATTTGACAATTGTAAATGTGAAattaa
atttctgaaaataattAAACTTAACTAgattattatattttaaaatgagT
AAGTTTTAATGTAAATAGATATATTAATCATTTAGGAAAAATAGCTATAA
TCATCAAGtgtaaataaattgaaaaatggcaaaatgagAGACTTGATAAA
ACTACGAAACATCAATCTACCGTCGTTTCAGCTTGTACTAATGCACTTTG
TAATACACCttgacgcactttgtaatacctaacgcactttgtaatacacc
ttggcacactttgtaatacctaacgcactttgtaatacacCTTGACACAC
ATTGTAATAcctaacgcactttgtaatacaccttgacacactttgtaata
cctaacgcactttgtaatacacc Coding sequence (CDS) from alignment at scaffold_331:1164810..1167132+ >TCONS_00059858 ID=TCONS_00059858|Name=TCONS_00059858|organism=Clytia hemisphaerica|type=CDS|length=1755bp|location=Sequence derived from alignment at scaffold_331:1164810..1167132+ (Clytia hemisphaerica)
GCGAACTCAATAATTTTGCTTGTAAATTATTATAATCACACGCTCCTTTT
TTCAGCTATCCTAATATTAGAGGAAAAATTAAAACTACCACAAGAGCATT
CAAACATTAGCAGGGTTTGTCTGCCGGACACTCGTGCACCTATCTCGGAC
GATCAAACATGTTATATTGTGGGTTATGGATTTACAACTTTCAATGGAAA
CAAATCTGATGATTTACGACATTCGAAGATTAATCTGGTACCAGTTGATA
CTTGTAATCAAGCCAAATCTTTCAACAATACAGTAGACGAGAATATGACA
ATTTGTGCTGGTGACGGAACAGCCAAAATTAGTCCTTGTAATACTGATAG
TGGAGGTTCACTTGTTTGTCAAGCAAATGgAACTTGGTATGCTCAAGGGA
TTGTGTCAAGTGGGTATAAATGTGGAGGTCAAGACGCATACAGCTTATAT
ACCagaatttcaaattataacGACTGGATtgcaaaagagatttttgaata
TTATTCATCAAGTGGTAGAACTTTAAAACCTTGTGTATTGCTTATGATGA
TAATTTCTTATGtaacttttgttttcttgataTAAGCGAACTCAATAATT
TTGCTTGTAAATTATTATAATCACACGCTCCTTTTTTCAGCTATCCTAAT
ATTAGAGGAAAAATTAAAACTACCACAAGAGCATTCAAACATTAGCAGGG
TTTGTCTGCCGGACACTCGTGCACCTATCTCGGACGATCAAACATGTTAT
ATTGTGGGTTATGGATTTACAACTTTCAATGGAAACAAATCTGATGATTT
ACGACATTCGAAGATTAATCTGGTACCAGTTGATACTTGTAATCAAGCCA
AATCTTTCAACAATACAGTAGACGAGAATATGACAATTTGTGCTGGTGAC
GGAACAGCCAAAATTAGTCCTTGTAATACTGATAGTGGAGGTTCACTTGT
TTGTCAAGCAAATGgAACTTGGTATGCTCAAGGGATTGTGTCAAGTGGGT
ATAAATGTGGAGGTCAAGACGCATACAGCTTATATACCagaatttcaaat
tataacGACTGGATtgcaaaagagatttttgaataTTATTCATCAAGTGG
TAGAACTTTAAAACCTTGTGTATTGCTTATGATGATAATTTCTTATGtaa
cttttgttttcttgataTAAGCGAACTCAATAATTTTGCTTGTAAATTAT
TATAATCACACGCTCCTTTTTTCAGCTATCCTAATATTAGAGGAAAAATT
AAAACTACCACAAGAGCATTCAAACATTAGCAGGGTTTGTCTGCCGGACA
CTCGTGCACCTATCTCGGACGATCAAACATGTTATATTGTGGGTTATGGA
TTTACAACTTTCAATGGAAACAAATCTGATGATTTACGACATTCGAAGAT
TAATCTGGTACCAGTTGATACTTGTAATCAAGCCAAATCTTTCAACAATA
CAGTAGACGAGAATATGACAATTTGTGCTGGTGACGGAACAGCCAAAATT
AGTCCTTGTAATACTGATAGTGGAGGTTCACTTGTTTGTCAAGCAAATGg
AACTTGGTATGCTCAAGGGATTGTGTCAAGTGGGTATAAATGTGGAGGTC
AAGACGCATACAGCTTATATACCagaatttcaaattataacGACTGGATt
gcaaaagagatttttgaataTTATTCATCAAGTGGTAGAACTTTAAAACC
TTGTGTATTGCTTATGATGATAATTTCTTATGtaacttttgttttcttga
taTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059858-exon-scaffold_331-1491911889:1164810..1165072 | TCONS_00059858-exon-scaffold_331-1491911889:1164810..1165072 | Clytia hemisphaerica | exon |
| TCONS_00059858-exon-scaffold_331-1510915933:1164810..1165072 | TCONS_00059858-exon-scaffold_331-1510915933:1164810..1165072 | Clytia hemisphaerica | exon |
| TCONS_00059858-exon-scaffold_331-1575043694:1164810..1165072 | TCONS_00059858-exon-scaffold_331-1575043694:1164810..1165072 | Clytia hemisphaerica | exon |
| TCONS_00059858-exon-scaffold_331-1491911889:1165565..1165681 | TCONS_00059858-exon-scaffold_331-1491911889:1165565..1165681 | Clytia hemisphaerica | exon |
| TCONS_00059858-exon-scaffold_331-1510915933:1165565..1165681 | TCONS_00059858-exon-scaffold_331-1510915933:1165565..1165681 | Clytia hemisphaerica | exon |
| TCONS_00059858-exon-scaffold_331-1575043694:1165565..1165681 | TCONS_00059858-exon-scaffold_331-1575043694:1165565..1165681 | Clytia hemisphaerica | exon |
| TCONS_00059858-exon-scaffold_331-1491911889:1166277..1167132 | TCONS_00059858-exon-scaffold_331-1491911889:1166277..1167132 | Clytia hemisphaerica | exon |
| TCONS_00059858-exon-scaffold_331-1510915933:1166277..1167132 | TCONS_00059858-exon-scaffold_331-1510915933:1166277..1167132 | Clytia hemisphaerica | exon |
| TCONS_00059858-exon-scaffold_331-1575043694:1166277..1167132 | TCONS_00059858-exon-scaffold_331-1575043694:1166277..1167132 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:1164810..1167132 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
BLAST of TCONS_00059858 vs. Swiss-Prot (Human)
Match: TM11F (Transmembrane protease serine 11F OS=Homo sapiens GN=TMPRSS11F PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.676e-21 Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 2
Query: 2 ANSIILLVNYYNHTLLFSAILILEEKLKLPQEHSNI-SRVCLPDTRAPISDDQTCYIVGYGFTTFNGNKSDDLRHSKINLVPVDTCNQAKSFNNTVDENMTICAGDGTAKISPCNTDSGGSLVCQANGTWYAQGIVSSGYKCGGQDAYSLYTRISNYNDWIAKE 490
IIL NY+ T L+ +L E SNI RVCLPD+ + + ++ G+G +G + LR +++ + D CN+ ++ + M +CAG KI C DSGG LV + WY GIVS G C +YTR++ Y DWIA +
Sbjct: 276 VRKIILHENYHRETNENDIALV---QLSTGVEFSNIVQRVCLPDSSIKLPPKTSVFVTGFGSIVDDGPIQNTLRQARVETISTDVCNRKDVYDGLITPGM-LCAGFMEGKIDACKGDSGGPLVYDNHDIWYIVGIVSWGQSCALPKKPGVYTRVTKYRDWIASK 435
The following BLAST results are available for this feature:
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