TCONS_00059897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059897
Unique NameTCONS_00059897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2105

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059897 ID=TCONS_00059897|Name=TCONS_00059897|organism=Clytia hemisphaerica|type=transcript|length=2105bp
CACACTGTTCCACATCAGAAGCCTCTCGTGTTTTAGTATAATTTGCAAAA
TCTAAAcatgaaagaaaaactttgGAATCATTATAAAGTAAACTCCCTAT
CAGTGGTCGATATGGAGCATTATCTCGATACAAGCAATACAACATCTCTT
GCATCTGCTTTGAAGTCTGCATATGCTGTATTCAATCAAACCATTCAAAT
GTACTCCTTAGATGAAATATGTATTGGATTCAATGGTGGTAAGGACTGCA
CTGCCGTTCTGCATTTATACGTTGCATTTATCAAGAAATTCTACCCAGAT
AATACTAAAAGGATTACTGGGCTTTATTTAAAGAATGCTAACCCGTTTAA
AGAAGCtcaagattttattaaaaactgTGAAGCGAATTATAATATTGATA
TGATTGTTATTCCGGCTAGTATTAAAGAAGGcttggaaaatttgaaagaa
tcgCACCCGAAGATTAAAGCTGTGATCATGGGGACACGTCGCCACGATCC
TTACTCATCGCAACTGAAATCGTTTACAATGACCGATGTTAGCTGGCCTA
GTTACATGCGAGTATTCCCGATCCTAGATTGGTCGTATGCCGAAGTATGG
GATTTTTTGAGAACTTTTGATTTACCTTACTGTCGTTTGTATGATGAAGG
ATATACTTCTTTGGGTGACCCTAACAATACACTTAAGAACCAAAGTTTAT
TATTGAAAGATGGTAGATACTCACCTGCGTACATGTTGCAAGAAGAAAGC
TTGGAACGCGAAGGACGAAATAAATGATGGCGACTTTCTTCAAAGAAACA
TTTTATCAAACACCTTGCTTATCCTTATCAAACACCAAACACCTCAAGGG
GATTGGGTTCAAGTTAACAAGGGTTGATTGACGTTATGTATCAAATGTTA
GAGATGTTAATGTAATAAATTCAGACACTTGACGTCTGTTAACTCTGGTG
AACTTGAAACTTTCATCTAGTTAGGGGCAAGAGTTGATAGATGTAAACAA
TGTATTCGACGTCCGAATAACAATTAACCATTTCAGTCCCAGAGACCCAC
AGAGCGAGTTCCTTCGGGGCCAAACTTAACCGGGCTATATCTCCAGAGCT
AAAAGATTCCCGGAACTTTCGTAGCTACCATCGGaaaaagcatgaaattc
tgaaGACAGCAGGTTGGTTTTGAGGCGCCCTTACCTCTTAACCGACGGTG
CGAAACTTTTGAATTCCATTCAAAAAGTGCAAAGGTCTAAGACTGAAAGG
GTTACGACGTGTGTTTGAGCTGGACTaataaatgttaaaaaattcaTATC
ACCGCAATCGATAATGACTCTCCTTGAAAAATAATCTCTCTATTTCGATA
GCTAAAGTTAGTTAGATCTGCTCGATTTCAACGAAGAAGCCACTGTATGT
ACAATGACCACCACCTGCCCCACGCTTTTGTTTTGATGCGTTCTCTACAT
TCTACTAAacgacccgggggggggggcactcaaggttaATGAGGTGCGGC
TCTTAATGGTATATTTTCCTTCCCAAAGTGCATTGTAAGAGTCAAAATCA
GCAAACGATCTTTGCCCTAAAAATCCATTCGCTTTGAATTTTCACTCTTT
TTTTATCTATGTGGAAACCATATCAGCGAAATTCGATTTATTCCCTCACA
TGTAAAGTAAATGCACTTTGGTTCATATACCTTATATTATAGCCCTTGAT
AGCCGTTGATATGAAAACCTTCTTAAAGGTCTGTTTATACTGTGGCATCT
CGAATGAGACTCTAATTATGTCTGTGTTTAACTGTTTATTGATTTATTAA
GTTAGTATTTTCTTGTACTTTTGCATTAACAACGTATGGATATTAATAGA
GAGgtgtattttatatttttacatttttacgctgatgatattttcaaatt
tttagattctgtattttcattgattttcatcattttttttatctagTGGT
AGATTATGTTATTATTTACATGAGTGATACACCTTTATTAAATTGATCGG
TTTTCATGATCTCGTACTAAAATTTatcttatatttttttgaacattttc
ataAGGTCTTTGGCATCTTACTCGAATTCTTTGAACAAAAGTATTCAAAT
GTCAC
Run BLAST on NCBI

transcript from alignment at scaffold_331:567092..571796-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059897 ID=TCONS_00059897|Name=TCONS_00059897|organism=Clytia hemisphaerica|type=transcript|length=4705bp|location=Sequence derived from alignment at scaffold_331:567092..571796- (Clytia hemisphaerica)
CACACTGTTCCACATCAGAAGCCTCTCGTGTTTTAGTATAATTTGCAAAA TCTAAACATGAAAGAAAAACTTTGGAATCATTATAAAGGTATGACTTTTG TTTATATTTAATACTTTTGGATGCATTACATGTTTATGTTTTGTTTGTGC ATGAGTTATAATGATCTTGAGAGATCCCCTTTATTTCTCAATGTTCCCTT CTCTACGACGATTGCTTAAATGGTTGTAGGAGAACTTGAGATCATATCAT GACATTCTTAAAGAATACAGGGCTTTATGGATCATATAATAATAACAATG CTCTATGAGTAAACACGGCAAGATAGAAACAGAGAATGCAATGTGATCAC TTTGTGATTTTTGATAATCGATAGGTAAAGGTAATTAGTAAGACAGTACA CCCCTGTCTCACAGACCCACTGGTAGTAAAATTTTACTGGAACTTTTTTC CTCAGTGGGGATAAACATTCCTATTGAATTCCCAATGGGGATAAAAATTC TATTGTTCCAAGGTAAAAAGATCCAGTGGGGATGGTTTTGGAGTACAATT TTTAAGCATAGAATTTCGAGTGGGGATGAAATCAAAGTCATTTTCCCAGT GGGGCTGAAATTCCCACCGGGGAAATTTTCCAGTGGGACTGGGGTCCCAG TGGGTCTGTGATACAGGGGTGTATTAAGTTAGTAAGACTAGTCAAAAGCT AAGAGATTTCTAGTTTTCTAGCCGAAACCTAAGACTATATTATTGGGCAT TTCAGTAGACAGAAATTTTTCAGTCAGGTATTTATACTCGAGTAATACAA ACTTAAGAAAAGTCGTTGAGTATATAATATATATTGGAGGTTTCAATTTT GTGTCGTATAAGCATAAAATTGCGTTGATTTTTAACATTAATGCTCCAAA ACGATTAAGGTATCATTAAAGATTGCAACAATTATGCTATTTAAGTCTGC TATTTATCTTTTTTTCGATTGATAATTAAATGGTCGACTCATTAGACTTC CTCTTACATAATTAGTGAAGCTGACTTTTTGTTCCTTTTGGATTTAGAGC CCTATACATTTTACCATAAGAAGCCATCTTGCCTCAAGGCAATTTTTGCT TTGTTTGGATGATTTTTTATTTGGAAAATGGTATTTGAAACTGTATTTTT GAAGTCTATTTGAAAATTCCAGCTTAACTATGTACTCTCGGGTACCTTAT AGCTGTTCCCCCCTGCTAATTAGTTTTTGGGAAAATGCTTTTGAAAGTTC CCCTCTTTTGTCCTAATTCTGCTGTATTAGCCTCCTTTTCAAAAATTTTC CACCCAGGTAATTTTTATTCCAATCCCCCCTTATTAAGTTTTGAGATTTT TTCCAATCCCTTGCGTTTACTGAACTGTTCGATAATACTACAACGACTTC TTCTAATAGAGGTTTAATGAGGTCTTTCAATTCAAGTTAATTATATCTCG ACTTCTTTTCTGTCCGTTTGTTTATCACCGTTGTTTGGCTTATTATAATG TTTACTATACATCTGAATACATATGTTGGTGTTTTTTTAGAACGTACTAA ATTGTGTTTTGGGTATCTCCTGTTTAAGACAACTTTTTCTTAATGAAAAC CTTTACATGAGTATTTCAATTTATTTTGAGAAAAAGAGATAGGATGAAAT ATTCCGATTTTTTTGGTCCGGCTTTAATTGGATAAGTTAAACAGCTACAA TTTAAGGACAAAATTAGGAGTAATCTAGGATGAGAGCTTTCTTCTGTGCG AATGGATGAAAAATTTCCCCAGTTAATTACTCCATATATAAAAGATTTTG TCTTGAAATTATACTCTTAAATGTAAATTATTAGAAAACGTAAGCTAAAT GATGAAAGGGGTAGAAAAGGATAAAAAAATATTGATAAAAAACGCGCTGT CCAAAAGAATGTTTTAAAAACTGATGGATATTATTTTGAGGATGAAAATT ATATAGCCTATAGTCCTATATAAGTGTAATAGTAAAGAATGTATCTTTCA GAAAATAGCAATATAAAACAAGGTAAATCCTTTTGTGAGTAATTTTGTCT ATTTACTTGAGAAATGGTTTTTTAGACTCAGCAAGCCTTAAGATGTTTTT AAGTTGTTCTTTATATTTTGGCCATCGAAGCCTTATGTTCTTATATAGTT TGTTCTTATAAAAGAACGTCTACCTTAAGGGAAGAAATTTTTCCGCGAAA TGAATAAAAACCACCTTGGACGATATTCACTTAAATTTTTATCCCTAAAA AATTCAAGAAAATCCTTCATTCGCGAATTTTTTCCGCGAAATACGCAATT TTCGCAACCTTAATTCGCGAAAATATCTTCCGCGAAAATTTCTTCCCTTA AGGTATCATTGTTAAGGCTTTGGATGAACTTTGAAACTATGCGTTTGCTG GGTAAGAACACTTCACATATTAGCACATGCATAATTAAAGGTTTATTTTT ACATAAGTGATTCCGTTTCATATTAGACACGTGATTCATATCAGTGTATG TCTATTGTTATTATGCTGATATAAGCAAAATGTCTTTCTTTTCCTCTTTC TGACCAATCTTCCTCCACATCCTTATTAATCCAATGTGAAAAGCTTGTAA TCCTTAAAATTGATGAGTAAGCAAACAATTCGCTCTCATGTAAAAACAAA ACCTTTAATCTACTCCATTCTTTCTCTTTTCTTTACAGTAAACTCCCTAT CAGTGGTCGATATGGAGCATTATCTCGATACAAGCAATACAACATCTCTT GCATCTGCTTTGAAGTCTGCATATGCTGTATTCAATCAAACCATTCAAAT GTACTCCTTAGATGAAATATGTATTGGATTCAATGGTGGTAAGGACTGCA CTGCCGTTCTGCATTTATACGTTGCATTTATCAAGAAATTCTACCCAGAT AATACTAAAAGGATTACTGGGCTTTATTTAAAGAATGCTAACCCGTTTAA AGAAGCTCAAGATTTTATTAAAAACTGTGAAGCGAATTATAATATTGATA TGATTGTTATTCCGGCTAGTATTAAAGAAGGCTTGGAAAATTTGAAAGAA TCGCACCCGAAGATTAAAGCTGTGATCATGGGGACACGTCGCCACGATCC TTACTCATCGCAACTGAAATCGTTTACAATGACCGATGTTAGCTGGCCTA GTTACATGCGAGTATTCCCGATCCTAGATTGGTCGTATGCCGAAGTATGG GATTTTTTGAGAACTTTTGATTTACCTTACTGTCGTTTGTATGATGAAGG ATATACTTCTTTGGGTGACCCTAACAATACACTTAAGAACCAAAGTTTAT TATTGAAAGATGGTAGATACTCACCTGCGTACATGTTGCAAGAAGAAAGC TTGGAACGCGAAGGACGAAATAAATGATGGCGACTTTCTTCAAAGAAACA TTTTATCAAACACCTTGCTTATCCTTATCAAACACCAAACACCTCAAGGG GATTGGGTTCAAGTTAACAAGGGTTGATTGACGTTATGTATCAAATGTTA GAGATGTTAATGTAATAAATTCAGACACTTGACGTCTGTTAACTCTGGTG AACTTGAAACTTTCATCTAGTTAGGGGCAAGAGTTGATAGATGTAAACAA TGTATTCGACGTCCGAATAACAATTAACCATTTCAGTCCCAGAGACCCAC AGAGCGAGTTCCTTCGGGGCCAAACTTAACCGGGCTATATCTCCAGAGCT AAAAGATTCCCGGAACTTTCGTAGCTACCATCGGAAAAAGCATGAAATTC TGAAGACAGCAGGTTGGTTTTGAGGCGCCCTTACCTCTTAACCGACGGTG CGAAACTTTTGAATTCCATTCAAAAAGTGCAAAGGTCTAAGACTGAAAGG GTTACGACGTGTGTTTGAGCTGGACTAATAAATGTTAAAAAATTCATATC ACCGCAATCGATAATGACTCTCCTTGAAAAATAATCTCTCTATTTCGATA GCTAAAGTTAGTTAGATCTGCTCGATTTCAACGAAGAAGCCACTGTATGT ACAATGACCACCACCTGCCCCACGCTTTTGTTTTGATGCGTTCTCTACAT TCTACTAAACGACCCGGGGGGGGGGGCACTCAAGGTTAATGAGGTGCGGC TCTTAATGGTATATTTTCCTTCCCAAAGTGCATTGTAAGAGTCAAAATCA GCAAACGATCTTTGCCCTAAAAATCCATTCGCTTTGAATTTTCACTCTTT TTTTATCTATGTGGAAACCATATCAGCGAAATTCGATTTATTCCCTCACA TGTAAAGTAAATGCACTTTGGTTCATATACCTTATATTATAGCCCTTGAT AGCCGTTGATATGAAAACCTTCTTAAAGGTCTGTTTATACTGTGGCATCT CGAATGAGACTCTAATTATGTCTGTGTTTAACTGTTTATTGATTTATTAA GTTAGTATTTTCTTGTACTTTTGCATTAACAACGTATGGATATTAATAGA GAGGTGTATTTTATATTTTTACATTTTTACGCTGATGATATTTTCAAATT TTTAGATTCTGTATTTTCATTGATTTTCATCATTTTTTTTATCTAGTGGT AGATTATGTTATTATTTACATGAGTGATACACCTTTATTAAATTGATCGG TTTTCATGATCTCGTACTAAAATTTATCTTATATTTTTTTGAACATTTTC ATAAGGTCTTTGGCATCTTACTCGAATTCTTTGAACAAAAGTATTCAAAT GTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037665XLOC_037665Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059897-exon-scaffold_331-1575043694:571709..571796TCONS_00059897-exon-scaffold_331-1575043694:571709..571796Clytia hemisphaericaexon
TCONS_00059897-exon-scaffold_331-1575043694:567092..569108TCONS_00059897-exon-scaffold_331-1575043694:567092..569108Clytia hemisphaericaexon
TCONS_00059897-exon-scaffold_331-1510915933:571709..571796TCONS_00059897-exon-scaffold_331-1510915933:571709..571796Clytia hemisphaericaexon
TCONS_00059897-exon-scaffold_331-1510915933:567092..569108TCONS_00059897-exon-scaffold_331-1510915933:567092..569108Clytia hemisphaericaexon
TCONS_00059897-exon-scaffold_331-1491911889:571709..571796TCONS_00059897-exon-scaffold_331-1491911889:571709..571796Clytia hemisphaericaexon
TCONS_00059897-exon-scaffold_331-1491911889:567092..569108TCONS_00059897-exon-scaffold_331-1491911889:567092..569108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:567092..571796 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (18.6538 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0473553 0.0536247 0.0440476 0 0 0 0 0 1.65519 3.27627 11.3447 0.502734 4.50223 1.64647 1.87836 1.78049 3.47282 1.05774 2.84551 3.35893 1.37608 5.07033 0.417757 0.239915 12.0492 7.9985 14.8695 18.6538 0 0.413497
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Expect = 2.82e-56 / Id = 41.45SequenceFAD1
Match NameE-valueIdentityDescription
FAD12.817e-5641.45FAD synthase OS=Homo sapiens GN=FLAD1 PE=1 SV=1[more]
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