TCONS_00059908 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059908
Unique NameTCONS_00059908
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059908 ID=TCONS_00059908|Name=TCONS_00059908|organism=Clytia hemisphaerica|type=transcript|length=497bp
GTGTAATTTCTGAAGTAGCTTTAACACCACCACCATTATCTATTGTTGTT
GTCATAGCTACCGTTTCAGATGGTTCAATCTGATTGGATACCGATGTTGA
CAGCCACTCCAGTTGATTGGACACTGATGCTGATGATGACGTAACAATAT
CAGGATCGTTGATAGTGGTACTCGATACAACTTGGTGTAATGAACTTGTT
GATGTAATCGGAGGTAGAGGTTGCATAGGAATTGTTGATGATGCTGGTTC
TCCGCTAGTTGTATGTGTTTGGTTAAGCGATACTGATTCAGAGGAAGATG
GAACTACTATTATTGAAGTCTGGCATCGTGTGTTTTGTATGTATAATATA
TTGATCAAAATGAAGCAACATAATGTCCTTTGTGTCATCTTCGAATTCAT
ATTTTGTCACTGAAATCAAAATGATCATTTGAAGTACAGGATACCTGGAA
AGAATCAAAAaagcgtggtgggtcgactaaaattcggGCAAACTGGG
Run BLAST on NCBI

transcript from alignment at scaffold_331:799028..799591-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059908 ID=TCONS_00059908|Name=TCONS_00059908|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at scaffold_331:799028..799591- (Clytia hemisphaerica)
GTGTAATTTCTGAAGTAGCTTTAACACCACCACCATTATCTATTGTTGTT
GTCATAGCTACCGTTTCAGATGGTTCAATCTGATTGGATACCGATGTTGA
CAGCCACTCCAGTTGATTGGACACTGATGCTGATGATGACGTAACAATAT
CAGGATCGTTGATAGTGGTACTCGATACAACTTGGTGTAATGAACTTGTT
GATGTAATCGGAGGTAGAGGTTGCATAGGAATTGTTGATGAGATANGCTT
GGTGTAATGAACTTGTTGATGTAATTGGAGGTAGAGGTTGCATAGGAATT
GTTGATGATGCTGGTTCTCCGCTAGTTGTATGTGTTTGGTTAAGCGATAC
TGATTCAGAGGAAGATGGAACTACTATTATTGAAGTCTGGCATCGTGTGT
TTTGTATGTATAATATATTGATCAAAATGAAGCAACATAATGTCCTTTGT
GTCATCTTCGAATTCATATTTTGTCACTGAAATCAAAATGATCATTTGAA
GTACAGGATACCTGGAAAGAATCAAAAAAGCGTGGTGGGTCGACTAAAAT
TCGGGCAAACTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037673XLOC_037673Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059908-exon-scaffold_331-1575043694:799373..799591TCONS_00059908-exon-scaffold_331-1575043694:799373..799591Clytia hemisphaericaexon
TCONS_00059908-exon-scaffold_331-1575043694:799028..799305TCONS_00059908-exon-scaffold_331-1575043694:799028..799305Clytia hemisphaericaexon
TCONS_00059908-exon-scaffold_331-1510915933:799373..799591TCONS_00059908-exon-scaffold_331-1510915933:799373..799591Clytia hemisphaericaexon
TCONS_00059908-exon-scaffold_331-1510915933:799028..799305TCONS_00059908-exon-scaffold_331-1510915933:799028..799305Clytia hemisphaericaexon
TCONS_00059908-exon-scaffold_331-1491911889:799373..799591TCONS_00059908-exon-scaffold_331-1491911889:799373..799591Clytia hemisphaericaexon
TCONS_00059908-exon-scaffold_331-1491911889:799028..799305TCONS_00059908-exon-scaffold_331-1491911889:799028..799305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:799028..799591 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.2902	0	0.33325	0.00429114	0	0.0932699	1.40784	2.20364	8.6411	11.756	12.975	14.8334	27.4227	28.1142	39.5542	37.9984	31.8861	45.5188	24.5751	22.2934	27.1242	18.3447	6.19962	7.50161	0.833989	0	2.72132	4.33854	37.8559	42.2208
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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