TCONS_00059924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059924
Unique NameTCONS_00059924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059924 ID=TCONS_00059924|Name=TCONS_00059924|organism=Clytia hemisphaerica|type=transcript|length=4056bp
tgggagggatttattggtttctaggcaatatttcaagccctactggacca
tttttgaacttttcgatcctcagatcctaaggtacTGATCATAAGGtact
aagtcttaagtctagcgtttaAACTCAGAGTCATAAattctacccttcga
acctactttagagcacttacaaatcgattgtggtttcaaaacaccccggt
gaatttcccttttgtgccaaatattttgtcactgattgtaggtAAAACTC
ACTGTAGAGAAGAAACATGGAATCTGAATGACGGCTCGAGTAGAGGCTAC
CATTACCCTCTATCACCAGTTGGTACAGTGGTATCAAGAACGTGTTCTGC
TAATGGAGATGCTAAGAACTTTACACAAACATGTTTGAGGAGTGGGCAAT
GGTCCTTTCCTAGAGGATGGATGGAAAATTGTTATACGAAAACAACCAAA
GAGCTGATTGATCTAAGGaatGATACTGTTTGCACCGAACTGTATCAAAC
CGATTGTAAAACGCCTGGAGAGATAGCAGACAAGTTAGAAGACATCTTCG
ATGGCACTAAAACTGTGACCAAGAAAGATACCAAAGCAGTGGCTGATATT
ATCGAAAATATATCAAAGGGAATTGATAATGTTCAAAACGAAACAGAAGT
TGAGTCGATTTTGACGAAGACAATCACTGTCACAAGTGTGATCACGTCTA
ATAAAGTCTCCGAAGAAAAAAACCTACAAAACGTTCACGCTAGTTTAGAA
AAAATCGCTGACAAAGCAGTCACGTTTTTACCAGTTGGTGAAGAAATACA
AATCTCAAAACCGAATGTCGGTTTCGTtggaaagaaaatcaaaagaggTG
ACATCACAATCGCATCAAAAGTAACCGAAAAATCACTCCAATCAGCTATT
TTATCACCTGCTAATTCATCGACTGTAGATAACTCACAATTTCAAGCATT
TGtgaaaattccagaatcagcTCTGGACCAATCAAAAGAGAATGTGTCTT
TACACTCCTTTATTTATCGATCAGATGAATCATCAGCATATAGTAAAAAC
AACCAAGAAAAACTAACCGCTAGTCATATTTTATCCATCACAATCAGCGG
ACAGAAAATTCGAGATTTAGAATCACCGATAAATGTCACTTTTGAAGTGT
TATCAAAAGCAATGAATATGACACCGAACTGCAGCTTCTGGGATACTGAA
AAAGGTATTTGGTCCAAACAGGGTATCCGAACCATCCAAAAACCAAAAGT
CAACTCTATATTATGTCAAACAAACCATCTGACAAATTTCGCTTTAATTC
TTGATGTCTCACAAACTGGTGCAAACCCATTGGCTCTTCAAATGATCACG
TGGGTTGGTTGTGGAATCTCATTGGCTAGCTTAATTTTGACCGTTATTGT
ATTTGGTGCATCAAGaaaacttcGAAAGAGACTGGTTACGAGATTAATAA
TCTGTTTCAGTTTATCCTTAATCACAACCTTGTTCCTGTTCTTGTTCGGT
GTAAATGAAACACAATCAAAAACATCATGTCAAGCAATAGCTGGATTAAT
CCAATATTTCTTATTGATGACCTTTTTCTGGATGGGAGCTCAAGGAATCA
ACCTTTACAATAGTTTGGTTAGAGtgatgaaaaggaagatttccgacaca
aaatattttttaagaagtTGTGTTGTCAACACAGTTGTTCCTGCACTTAT
TGTTATCATATCTGCATCAGTAAAAAGCAACAGCTATGGCGGTGAAAAAT
TTTGTTTGGTTCATGGCATGCCGTTTTACTTTGGTTTACTGCTTCCTATC
TGCTTCATTATCCTGATGAACATCGTCCTCTTATCCCTGGTCATCTACAA
TGTTCACCATACCCCTGCTAACATTCGATCATCAAGGAAGGAAAGCAGCA
AAAAATCATACATGTTCAAACTTACTAAAATTACCATCGCCTGTTCAACG
TTACTTGGGATAGCATGGTTGTTCGGTGTTTTAGCTGTAGGGAAGTTGAC
CACGGTTATGCAGTATTTGTTCTGCATTTTCAACTCATTGCAAGGATTAT
TTGTGTtggttttttatgttttaaccAATGAGGAAGTGAAGAAAGAATGG
TTGGAATTACTTGGATGGGATGATTTCAGCATTATCTCCCTCAGCTTTGG
AGCCAAAAAAGGAAGTCATGACATCAATACACAATCAACAAATGACCAAT
CAAGAAATAGCCAATCAGATGATACAAAGATGGGTTTCAAAGGAGTTTAC
AACAGTTATTCACCAACATCAAACGAAGAGACTGACAAAGAACCTAGATA
TGTTAATCCAAGCTTATTGAAACAAAACCCTGCATTTACTATGGAAGATG
AAGAAAAGGATTCGAATGTATCTCCGTATCTTGTTCCGGCTAAAATACTT
CGCAAGTCAAATATCAGTGATAAAGATGATGTTGGTCTTAACAATACAGA
ATTAAACGACGAAATAGAATTTCAAATCCCTGaggaatttcattttgaaa
gtCCAAACGTTTCAACTAACCAAGCATCAAACCGTCTACCTGAGATGGTC
ACCATACCACAAAATGATTTCGATAACGAAGTGCTTCAAAACGATTCCAC
GCCAGAATTAGATTGTTACCCGAAAACAAAAACTGATATTTTCGACAGAC
CACGTGATGAGGAAATCAAACACAAACAACTGGAAAATGATCATGATTCA
AATCCAAAGAAGACTTCCTCTGTTGATCTCAAAAACGATTTTCCTATCCA
GACGAAGGACCAAAGTTTGAAGGATAAAGAACGTCCACATCAAAATACTG
TAGTAAATTATCCAGACTCTCTACAGTCGCCAACTTTAGATTCAATGAAA
ACGGTCGAACCAACACCAAAGGAAGAGCCACTGAAAGGAAACACAGCATT
ACAACCTGATAGCAATTTGAAAACACCAGAATATAAAGATTCAAAACTGC
TTGAAGGCGTAGAACCCACACAACAgagaaatgaagaaaatccacAAAGG
AAGAAGAAAACAGACAAGATAGTGCCGGCGGCCGAACATGGTACTAATCC
ACTTCAAGAAGAAATATCAACCTCTAAAGGAAATGAAGAAAACCTAATTT
TGAAACCGGAAAACAAAAATCACAACCGACAACCACCAAAAGTTCTTGAA
TTTCGTCCTCAGAATACTAACCCAGCTTCTGATACCACAAAAAAAGACAT
TGATGCTAGAGGAAACTTCCGTAAAACCTTGAAACAGAATATTCTACAAC
ATAAGGAGAGTGAGGGAGCCAAAGATAAttctgatgatgatgataaacca
ACATTATCTCTGGTGGATCAAAAAGAATCGGTTCCTTTTAGGTCGAAAGC
GCTAAGCCTCTCCAGTGGTAAACCATGCTCTTAGATGAAGACCAAcagct
acatgttttttttataagcattgcacttaagcatatctaggctcagcaga
tatggggaaaaattaagcatatggcaagcattgtatattttggctttttt
tggctggatttTCGGTATTTCCCTAACTTTATGCTTTGTATTTATgcatc
cctcaagcatttttcagccttattaagctttcgacctaagcatctctgag
cctgttttctgattttgtatgcttataaaaaaacaacatgtaaTTGGGTA
AAATGGGCCTCACTGAAGACGGGGAATTGTTTAGAAAATGAatatatatt
ttgtattttagggcacattgctatacattattttgtattttaaaaagttt
tacaattttgtttttAGGTAATGAACAGTAAAGTGAGTAAAATAGACGAC
ACTGAAACTATGGGTGTTCTAGAAAATAAACATTAATTTTGTTatttaat
tagtttttttatataagttttgattttaaataagcttttatttttagatt
ttacagaATATTTCATACACCAGGCAGGTTAGGCAAATCTATTCTAGAAC
TCTGAAGCTCTCGTCGCTTGACATAGGATAACATGGAGAAATTTTCTTAC
ACTAGGTATTTGCAAatagtttttgataaaatccactttgaatatttttg
aaaaag
Run BLAST on NCBI

transcript from alignment at scaffold_331:1116392..1125636-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059924 ID=TCONS_00059924|Name=TCONS_00059924|organism=Clytia hemisphaerica|type=transcript|length=9245bp|location=Sequence derived from alignment at scaffold_331:1116392..1125636- (Clytia hemisphaerica)
TGGGAGGGATTTATTGGTTTCTAGGCAATATTTCAAGCCCTACTGGACCA
TTTTTGAACTTTTCGATCCTCAGATCCTAAGGTACTGATCATAAGGTACT
AAGTCTTAAGTCTAGCGTTTAAACTCAGAGTCATAAATTCTACCCTTCGA
ACCTACTTTAGAGCACTTACAAATCGATTGTGGTTTCAAAACACCCCGGT
GAATTTCCCTTTTGTGCCAAATATTTTGTCACTGATTGTAGGTAAAACTC
ACTGTAGAGAAGAAACATGGAATCTGAATGACGGCTCGAGTAGAGGCTAC
CATTACCCTCTATCACCAGTTGGTACAGTGGTATCAAGAACGTGTTCTGC
TAATGGAGATGCTAAGAACTTTACACAAACATGTTTGAGGAGTGGGCAAT
GGTCCTTTCCTAGAGGATGGATGGAAAATTGTTATACGAAAACAACCAAA
GAGCTGATTGATCTAAGGGTGAGAATTCGGCATTTAACGTTTTTATAAAG
CTCTTTAGACGTATTAGGCTAAGCTCAACTTCACGGAGAAAAATCTTTGA
ACATAATGTTCCCAGCTGGCAAACAACGTTGTTTCAACGTTTATCTAATG
TTCATAACGTCCATATAACGTTAGATGAACGTTGAAATAACGTTGTGTGC
CAACTGGGCTACCAACTGATAACATACAGTTTCAGTGTAATTTCCGGCGT
TTTGAAAAGTGGTAATAAACGACTTCGTTAGATAAAATAAGCAACTCAAG
AAAGAGATTCATGAAATCAGGTTCATCAAATTAAAGCTTTCTTAAAATAT
CAGGAAAATGAAATTTTTTGCACTCTCCAAAGCAACTTTGGGTAATTTTA
CTCAAAAAGGTGTACCATTATTATAAAATTCTCGAAAACGTTGTATTTAT
CGAAAAATCTTCTTCTTTTTTAGAATGATACTGTTTGCACCGAACTGTAT
CAAACCGATTGTAAAACGCCTGGAGAGATAGCAGACAAGTTAGAAGACAT
CTTCGATGGCACTAAAACTGTGACCAAGAAAGATACCAAAGCAGTGGCTG
ATATTATCGAAAATATATCAAAGGGAATTGATAATGTTCAAAACGAAACA
GAAGTTGAGTCGGTAAGAAAATGAACCACCTGTCGAGAAGTCCACAAAAA
ATCAAGCTCTTGTTGTTGTTGTGAAATTTTACTCAAGTTTACCGATTTAC
TTGTATGTTAGACATTCGTCTAACCTGTCTCACAGCCCTGGTCGAACTTT
TTTCCTCAATGGGGATAAGTATTCCTGTTAAAATCCAAATGTGGATAAAA
ATTCTATTGTTCCAAGGTTAAAAAATCCAATGGGGAACGTTTTGGTGTAA
AATTTTTGAACATTGAATTTCGAGTTGGGATGAAATCAAACTCAATTTAC
CAGTGGGGCTGAAATTCCTGGGTATGTTCCCACCGGGGACGAAATTTTCG
CAGCATTTTCCAGTGGGGCTTGGGTCCAAGCGGGTCTATGACACAGGGGT
GTAACATATGTAACATATCTAAAGGCATAATTGGATAGTCTGAGGTATTT
GGCATGTGGCTTCCTTCTTATTCGTTCCAAGTTAGTACCTAACTANGGCT
ACAATAAGGCTATTTAGAGCAAAATAGGGGGCCTGAAAGCTGAAGCTATT
GACAGCTGAAAATATTCTTAAAAATTAATAAACGGGGGGGGGGGTCCTAA
TAAGGTCCAGGGGGTTTGGAAAACTTTCGAAAAATTAACAAGCGGGGGGG
CCGTTTATTTGGCACCTAAGAGTAACATAACACCCCTGTCTCACAGCCCT
GGTCGAACTTTTTTCCTCAATGGGGATAAAAATTCCTGTTAAGATCCAAA
TGGGGATAAAAATTCTATTGTTCCAAGGTTAAAAAATCCAATGGGGAAGG
TTTTGGTGTAAAATTTTTGAACATTTAGTTTCGAGTTGGGATGAAATCAA
AGTCAATTTACCAGTGGGGCTGAAATTCTAGGGTATTTTTCCCACCGGGG
ACGAAATTTTCGCAGCATTTTCCAGTGGGGCTTGGGTCCAAGCGGGTCTA
TGACACAGGGGTGTAACATATGTAACATATCTAAAGGCATAATTGGATAG
TCTGAGGTATTTGGGATGTGGCTTCCTTCTTATTCGTTCCAAGTTAGTAC
CTAACTAATTTTCCAAAATCGAGATATTGAAGCTTTTTACTTTAACAAAA
ACAATAAACAATAGAATTTCGTCGTAACAACCGTTTAGTTTAAAAGAACC
CATTTTAAGAAAAATTGTGGTATTTCGTCTTTGGAAAATGATAGACAAAA
ATACTTGGACGTTTCTGCAAGCCAAATTCCAAACCATCTGATTATCCCGT
TTGTTTATTAATAATGCCTATGGTTTAGCTGACTCAACTAAGCCCTTGCG
ACGAAAATAAAATTTCGAAGAAGTTTAAGGCTTATTTTTTTTTAAATAGA
GAGTCTAGCTGGCGTGGAAGAAAACTGCAAAGGATCGAAGAAATCGACTT
TATTTTCCATCTAGATTTTGACGAAGACAATCACTGTCACAAGTGTGATC
ACGTCTAATAAAGTCTCCGAAGAAAAAAACCTACAAAACGTTCACGCTAG
TTTAGAAAAAATCGCTGACAAAGCAGTCACGTTTTTACCAGTTGGTGAAG
AAATACAAATCTCAAAACCGAATGTCGGTTTCGTTGGAAAGAAAATCAAA
AGAGGTGACATCACAATCGCATCAAAAGTAACCGAAAAATCACTCCAATC
AGCTATTTTATCACCTGCTAATTCATCGACTGTAGATAACTCACAATTTC
AAGCATTTGTGAAAATTCCAGAATCAGCTCTGGACCAATCAAAAGAGAAT
GTGTCTTTACACTCCTTTATTTATCGATCAGATGAATCATCAGCATATAG
TAAAAACAACCAAGAAAAACTAACCGCTAGTCATATTTTATCCATCACAA
TCAGCGGACAGAAAATTCGAGATTTAGAATCACCGATAAATGTCACTTTT
GAAGTGTTATCAAAAGCAATGAATATGACACCGAACTGCAGCTTCTGGGA
TACTGAAAAAGGTATGAAAAGTTTAACTATGTTTACAAAAGTTCATAACC
TGTATAAACTATAATAGAGAGCCTAACCTCCGAGTAGATTCCAATTACTC
AGCGCATAGCATGTGTTCATTTTAAAGGCCATAACTCCGTAAAAGGATCT
GTCTAGGTTTGCAGAATTGTTTTGATCTTTTATATCCAGGTACGGGGTGA
GTATTAAATGAGCACCATAACAAACGCCAATCATAAACTTAATAAACATA
AACATTAAAACCCAGCCACTTTCACTTTCGTTCTCGTTCTCGTTTTAAAA
AAGGCGTAGCCGTATAGTGGTTATCATCCTCGACTCCCGCCTGGGAGGCC
CGAGATCGATACCCATACGATTCACTTGGCAAGTGAAGTTACCTTCGCCC
GGGTCAACCCATGCCATGTGAGGGGAATTGGGTACCATTACTTTGATACA
AGAGTGTGGGTAGATTAGACAGACATTGTGACGTGCCGTGGCACTCATAA
GGTTCGGCCTCGCGTGTGCATCGCTCTCCCAGTGCCGTTCGAGTGTCATG
GTATACGCCATGGCTTGACAGCTTGCGTCTGTCAAGTTGCAGTGTCTGTC
AGCGCCGTGATTCCTACTCCTTCGTGGGTAGGACCTATCCCGAATGCATT
CGGAGGGCTCATATCTATCTCGTTTTGTAGCCGCGCGCTGGCAGCTCTTA
AGATTTTGATTTATTAAACAACAATCGACACATCAAACAATCTTAATAAA
ATAAACCTTATCGGGGAAAACTTCGTCGGGGAAAAGTGATGAAATTTTGG
CCAAGTGACGAATATTTTTCCCNGGGAAAACTTCGTCGGGGAAAAGTGAT
GAAATTTTGGCCGAGTGACGAATATTTTTCCCGACGAAAATTTTTCCCGG
CCTTAATGCGTTTACCAACTACCAGGAAGTGACGAATATTTTTCCCCGAC
GAAGTTTTCCACGATAAAGTGCCATCAATTGTATTCCGAGTAGTGGTTTA
TATGCCATATGTCATACATTGTAATTTCATGTAATCGAATTTTATCGAAA
CCTATGGACAAAATGCTTCTTTCTTTAGGTATTTGGTCCAAACAGGGTAT
CCGAACCATCCAAAAACCAAAAGTCAACTCTATATTATGTCAAACAAACC
ATCTGACAAATTTCGCTTTAATTCTTGATGTCTCACAAACTGGTGCAAAC
CCATTGGCTCTTCAAATGATCACGTGGGTTGGTTGTGGAATCTCATTGGC
TAGCTTAATTTTGACCGTTATTGTATTTGGTGCATCAAGGTAAACCATTC
AGCTCAGACTTAGGAGGAGCAATTTTTCTACACTTTTTTTTTATCCTATC
AAAAAAAAGCCATATTCAAAAAGCTTCCATACTTCCCTTTTTATCATTGA
AGAGCAATATGTCGATTTTTACCGACATGATTTTCCCTTCACTTTCAAGT
TTTTTCTTTACTTCACTTGCCTAATTATATGGGACCTACTATTCTTGAAG
ACCTAATACTCTTTTGGACCAATCTCGTACCCAGAGTCAATTGGACCACT
TTTAATTTTACTGATAAACTAAGGGAGTTTACTTTTTGACAAACTTGGCT
TTCTGATAATTTTTAGGTTTATCGTTTCACTTAGTCAGCCAAAAGTGGAC
AAAAGTTGCCACCAGGCTACGGTTTTACTAATAATCTAAGACTTGATTCA
TCACTTTTGAAATAACTTTATTCTTTTTTAGAAAACTTCGAAAGAGACTG
GTTACGAGATTAATAATCTGTTTCAGTTTATCCTTAATCACAACCTTGTT
CCTGTTCTTGTTCGGTGTAAATGAAACACAATCAAAAACATCATGTCAAG
CAATAGCTGGATTAATCCAATATTTCTTATTGATGACCTTTTTCTGGATG
GGAGCTCAAGGAATCAACCTTTACAATAGTTTGGTTAGAGTGATGAAAAG
GAAGATTTCCGACACAAAATATTTTTTAAGAAGTTGTGTTGTCAACACAG
GTAAATTTTAAATAAGAAAATTTCAGGAAAAATTGAAAGTGAGGTAGCAA
AGCAGAAATATATCGTGTATATATCACGTATATCAGCCTCGCTCCCTGCG
TAGTATCAGCTTTTTGATGCTTACTGATAGCACTAGATAAAACCTGGCAT
TCGCAAAATAATACCCTGGTATTTTCTGTGCTCTTCGAATGCGTATAATT
ACGTAATTCAAAAACAAAAAGTCAGATTTCATTTGTAGTCTATTAATGAA
CTTGCATGGATTGTAGAGAGCTGTAAAATGCCAGAGCGATATAGCTCACC
AAACTCACGCGCGCGCGGCGTTCTGAGTTGATAGATGAGTTCACCACTGA
GAATAATTTCATTTTTTCATGGTACTATTTCATGCATTTTGCTTTTGTCA
AAAATACTGCTTCGGATTGTCTGTCTGTTGTTTAAAGAGACTAAAGGACA
GTCTCCACTTGCGCGCGCTATGATCGCACTTTTTGGCTTCAATCCTTTTT
GCTTGGAAAAAAAGATTATGTCATAAAAATGTAGCGCACGCTCGAAAAAG
TTGAACACATTTCAACTTTTTTCAACCGTTACGTCAGATCGCGCCAATGG
AGCTGCTTCGTTTTTATTTTGAGCAACAGCGTGCAAGCTTTGCTCGAAAA
AGTGCGATCAAAGCGCGCAAGTGGAGACCGGCCTAAACATTTTATACTCT
AATGTGTTTCTTCTTTTCTCCAGTTGTTCCTGCACTTATTGTTATCATAT
CTGCATCAGTAAAAAGCAACAGCTATGGCGGTGAAAAATTGTAAGTGAAA
AGCTTAAGTACTCGATATAGCTTTTTTAGTGCACCAGAACTGATTTTTTT
TTTCAATTCTACTTTGAAACTGCATTCACTCATTTCAGTTTTGAAAACTT
AATGGCAATATTTTAGAAGCGCTCTGTGGAACACATTCTGTTCGAATAAT
GATGCCGCTTTTTTGTGATTTATTTTATCACTTTATATAATAAAATACCC
TTAATTATTGTATTTCATTATTAAACACTCTGGTTATGATTATTAACACT
TATAATCCTGTAAAATTAAATCCGGGGGAGTTACCTAGACAAGTGAAGGT
GCACCCTTTAAGTGCTTTTCTAACCCCTAGGGTCAGAAAATTAAAGGGAT
AATCAGATGGTTTGTAATATGTGGCATGTGGGATTCTTCTATTGTCCTGA
GCAAAATCTCAAAATATTTTTTCCTGACTATTTTCCAAAGTCGAGATATT
TAAAGTTACAAGTTTTTGGCTTTTAGGATGAAAACAATAGAATTTCAGCG
TAAAAACCCTGGAAGAACCCATTTTCAAAAATTCCAAATTTTGATTTTGA
AAAATTGTTGCACAAAAATACTTTGAGTTTTTACTAAGGACCACAGGAGG
TTTCTGCAATCTAAACCATCAAACCATCTGCTTATCCCTTTAAATCTCAG
TCCACCTCAGGGTCGAAAAATAAATTTCGTTTTTTCGACTCTTAACCGAT
CGAAATTGGGTCGAAACCCGCAAAAGCCTGTACCGCGGTATCATATTTAT
TTTAAACTTCAATACATACTTAAATTTCAGTTGTTTGGTTCATGGCATGC
CGTTTTACTTTGGTTTACTGCTTCCTATCTGCTTCATTATCCTGATGAAC
ATCGTCCTCTTATCCCTGGTCATCTACAATGTTCACCATACCCCTGCTAA
CATTCGATCATCAAGGAAGGAAAGCAGCAAAAAATCATACATGTTCAAAC
TTACTAAAATTACCATCGCCTGTTCAACGTTACTTGGGATAGCATGGTTG
TTCGGTGTTTTAGCTGTAGGGAAGTTGACCACGGTTATGCAGTATTTGTT
CTGCATTTTCAACTCATTGCAAGGATTATTTGTGTTGGTTTTTTATGTTT
TAACCAATGAGGAAGTGAAGAAAGAATGGTTGGAATTACTTGGATGGGAT
GATTTCAGCATTATCTCCCTCAGCTTTGGAGGTGAGCGTTTTCAAGATGT
GTATCTGACAGGGTTGACTTTTGGCTACTTGGGTCAATTTTCAAGGTGGA
AATTAGAAATTTTTTCAATTTTTCGTCTACTTTTAGTTGATTTCGTTCGT
CCCAAATTTACCAAACATTCATATCTGACCACTTTTCAACCTCCAGCAGC
ACGTCTCCGTCGGTCTTCAAGATCAGTATCCCTCCTCCCTGGGTTTCTCA
ATCATATGATTTAAGAAATTTCAAATCTGTTTTTATAAGAGATGGACAGG
ATTAATTGAACAAAATTACTTTTTGCTTTTTTTATGTACAGCCAAAAAAG
GAAGTCATGACATCAATACACAATCAACAAATGACCAATCAAGAAATAGC
CAATCAGATGATACAAAGATGGGTTTCAAAGGAGTTTACAACAGTTATTC
ACCAACATCAAACGAAGAGACTGACAAAGAACCTAGATATGTTAATCCAA
GCTTATTGAAACAAAACCCTGCATTTACTATGGAAGATGAAGAAAAGGAT
TCGAATGTATCTCCGTATCTTGTTCCGGCTAAAATACTTCGCAAGTCAAA
TATCAGTGATAAAGATGATGTTGGTCTTAACAATACAGAATTAAACGACG
AAATAGAATTTCAAATCCCTGAGGAATTTCATTTTGAAAGTCCAAACGTT
TCAACTAACCAAGCATCAAACCGTCTACCTGAGATGGTCACCATACCACA
AAATGATTTCGATAACGAAGTGCTTCAAAACGATTCCACGCCAGAATTAG
ATTGTTACCCGAAAACAAAAACTGATATTTTCGACAGACCACGTGATGAG
GAAATCAAACACAAACAACTGGAAAATGATCATGATTCAAATCCAAAGAA
GACTTCCTCTGTTGATCTCAAAAACGATTTTCCTATCCAGACGAAGGACC
AAAGTTTGAAGGATAAAGAACGTCCACATCAAAATACTGTAGTAAATTAT
CCAGACTCTCTACAGTCGCCAACTTTAGATTCAATGAAAACGGTCGAACC
AACACCAAAGGAAGAGCCACTGAAAGGAAACACAGCATTACAACCTGATA
GCAATTTGAAAACACCAGAATATAAAGATTCAAAACTGCTTGAAGGCGTA
GAACCCACACAACAGAGAAATGAAGAAAATCCACAAAGGAAGAAGAAAAC
AGACAAGATAGTGCCGGCGGCCGAACATGGTACTAATCCACTTCAAGAAG
AAATATCAACCTCTAAAGGAAATGAAGAAAACCTAATTTTGAAACCGGAA
AACAAAAATCACAACCGACAACCACCAAAAGTTCTTGAATTTCGTCCTCA
GAATACTAACCCAGCTTCTGATACCACAAAAAAAGACATTGATGCTAGAG
GAAACTTCCGTAAAACCTTGAAACAGAATATTCTACAACATAAGGAGAGT
GAGGGAGCCAAAGATAATTCTGATGATGATGATAAACCAACATTATCTCT
GGTGGATCAAAAAGAATCGGTTCCTTTTAGGTCGAAAGCGCTAAGCCTCT
CCAGTGGTAAACCATGCTCTTAGATGAAGACCAACAGCTACATGTTTTTT
TTATAAGCATTGCACTTAAGCATATCTAGGCTCAGCAGATATGGGGAAAA
ATTAAGCATATGGCAAGCATTGTATATTTTGGCTTTTTTTGGCTGGATTT
TCGGTATTTCCCTAACTTTATGCTTTGTATTTATGCATCCCTCAAGCATT
TTTCAGCCTTATTAAGCTTTCGACCTAAGCATCTCTGAGCCTGTTTTCTG
ATTTTGTATGCTTATAAAAAAACAACATGTAATTGGGTAAAATGGGCCTC
ACTGAAGACGGGGAATTGTTTAGAAAATGAATATATATTTTGTATTTTAG
GGCACATTGCTATACATTATTTTGTATTTTAAAAAGTTTTACAATTTTGT
TTTTAGGTAATGAACAGTAAAGTGAGTAAAATAGACGACACTGAAACTAT
GGGTGTTCTAGAAAATAAACATTAATTTTGTTATTTAATTAGTTTTTTTA
TATAAGTTTTGATTTTAAATAAGCTTTTATTTTTAGATTTTACAGAATAT
TTCATACACCAGGCAGGTTAGGCAAATCTATTCTAGAACTCTGAAGCTCT
CGTCGCTTGACATAGGATAACATGGAGAAATTTTCTTACACTAGGTATTT
GCAAATAGTTTTTGATAAAATCCACTTTGAATATTTTTGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037681XLOC_037681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059924-exon-scaffold_331-1575043694:1125169..1125636TCONS_00059924-exon-scaffold_331-1575043694:1125169..1125636Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1575043694:1124525..1124713TCONS_00059924-exon-scaffold_331-1575043694:1124525..1124713Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1575043694:1122576..1123122TCONS_00059924-exon-scaffold_331-1575043694:1122576..1123122Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1575043694:1121298..1121508TCONS_00059924-exon-scaffold_331-1575043694:1121298..1121508Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1575043694:1120587..1120855TCONS_00059924-exon-scaffold_331-1575043694:1120587..1120855Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1575043694:1119797..1119863TCONS_00059924-exon-scaffold_331-1575043694:1119797..1119863Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1575043694:1118606..1119006TCONS_00059924-exon-scaffold_331-1575043694:1118606..1119006Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1575043694:1116392..1118295TCONS_00059924-exon-scaffold_331-1575043694:1116392..1118295Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1510915933:1125169..1125636TCONS_00059924-exon-scaffold_331-1510915933:1125169..1125636Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1510915933:1124525..1124713TCONS_00059924-exon-scaffold_331-1510915933:1124525..1124713Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1510915933:1122576..1123122TCONS_00059924-exon-scaffold_331-1510915933:1122576..1123122Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1510915933:1121298..1121508TCONS_00059924-exon-scaffold_331-1510915933:1121298..1121508Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1510915933:1120587..1120855TCONS_00059924-exon-scaffold_331-1510915933:1120587..1120855Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1510915933:1119797..1119863TCONS_00059924-exon-scaffold_331-1510915933:1119797..1119863Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1510915933:1118606..1119006TCONS_00059924-exon-scaffold_331-1510915933:1118606..1119006Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1510915933:1116392..1118295TCONS_00059924-exon-scaffold_331-1510915933:1116392..1118295Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1491911889:1125169..1125636TCONS_00059924-exon-scaffold_331-1491911889:1125169..1125636Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1491911889:1124525..1124713TCONS_00059924-exon-scaffold_331-1491911889:1124525..1124713Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1491911889:1122576..1123122TCONS_00059924-exon-scaffold_331-1491911889:1122576..1123122Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1491911889:1121298..1121508TCONS_00059924-exon-scaffold_331-1491911889:1121298..1121508Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1491911889:1120587..1120855TCONS_00059924-exon-scaffold_331-1491911889:1120587..1120855Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1491911889:1119797..1119863TCONS_00059924-exon-scaffold_331-1491911889:1119797..1119863Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1491911889:1118606..1119006TCONS_00059924-exon-scaffold_331-1491911889:1118606..1119006Clytia hemisphaericaexon
TCONS_00059924-exon-scaffold_331-1491911889:1116392..1118295TCONS_00059924-exon-scaffold_331-1491911889:1116392..1118295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:1116392..1125636 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0101392	0	0.0813043	0.117297	0.0125086	0.0197358	0.024538	0.0564511	0.0547184	0.026449	0.0658647	0.0418388	1.73474	1.0023	0.294001	0.237895	0.223763	3.08327e-09	5.11785	4.5879	0.0345609	0.107092	0.305717	0.336977	0.5193	1.25933	1.80237	1.94696	0.0618742	0.0747659
Blast
[Close]
BLAST of TCONS_00059924 vs. Swiss-Prot (Human)
Match: AGRL3 (Adhesion G protein-coupled receptor L3 OS=Homo sapiens GN=ADGRL3 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.952e-48
Identity = 125/367 (34.06%), Postives = 184/367 (50.14%), Query Frame = 1 
Query: 1165 NMTPNCSFWDTEK----GIWSKQGIRTIQKPKVNSILCQTNHLTNFALIL---DVSQTGA-NPLALQMITWVGCGISLASLILTVIVFGASRKLR-------KRLVTRLIICXXXXXXXXXXXXXXGVNETQSKTSCQAIAGLIQYFLLMTFFWMGAQGINLYNSLVRVMKRKISDTKYFLRSCVVNTVVPALIVIISASVKSNSYGGEKFCLVH-GMPFYFGLLLPICFIILMNIVLLSLVIYNVHHTPANIXXXXXXXXXXXYMFKLTKITIACSTLLGIAWLFGVLAVGKLTTVMQYLFCIFNSLQGLFVLVFYVLTNEEVKKEWLELLGWDDFSI----ISLSFGAKKGSHDINTQSTNDQSR 2205
            N  PNCSFW   K    G WS QG R +   K ++  C  NHLTNFA+++   +V  + A + L L +ITWVG  +SL  L++ +  F   R L+       K L   L +   L LI        G+N T    +C   A L+ +F L  F WM  +G+ LY  LV V + + S  KYF    +V   +PALIV +SA+V   SYG +K C +     F +  + P   II++N++ L + +Y + H  A I             + +  I + C  LLG+ W FG++ + + T +M YLF IFNSLQG+F+ +F+ +  ++V+KE+ + L     S      S+  G   GS      ST  QSR
Sbjct:  800 NFNPNCSFWSYSKRTMTGYWSTQGCRLLTTNKTHTT-CSCNHLTNFAVLMAHVEVKHSDAVHDLLLDVITWVGILLSLVCLLICIFTFCFFRGLQSDRNTIHKNLCISLFVAELLFLI--------GINRTDQPIACAVFAALLHFFFLAAFTWMFLEGVQLYIMLVEVFESEHSRRKYFY---LVGYGMPALIVAVSAAVDYRSYGTDKVCWLRLDTYFIWSFIGPATLIIMLNVIFLGIALYKMFHHTA-ILKPESGCLDNIKSWVIGAIALLC--LLGLTWAFGLMYINESTVIMAYLFTIFNSLQGMFIFIFHCVLQKKVRKEYGKCLRTHCCSGKSTESSIGSGKTSGSRTPGRYSTGSQSR 1151
The following BLAST results are available for this feature:
BLAST of TCONS_00059924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGRL32.952e-4834.06Adhesion G protein-coupled receptor L3 OS=Homo sap... [more]
back to top