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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060053 ID=TCONS_00060053|Name=TCONS_00060053|organism=Clytia hemisphaerica|type=transcript|length=2849bp
caagcTAGGATTGCATTCAGTTGATGCTACAATTTTTAAAAAGGGTGTAT
TTTTGCTTTTGGGTGTGGTTTTCGCGCGCGGGGGAAAAGGGAGACTGGAC
ATAATTAGGGCTGGTATACATTctacaaataatttttttgaggacATGTG
GAAAGGGGTATAAAAATAATAGTAGCTtgttttcaagatggcggcgcCGA
AAATGattcatttttgagaaatcgaagacgattttctttaaaaccaCAAG
ACCAAACAAGAAATTAGATCATAAACTGCAGAAATTAAATCAGGCTCAGA
ATATTTATTTTACTTCCTACGNTTtgttttcaagatggcggcgcCGAAAA
TGattcatttttgagaaatcgaaGACGATTTtctcccggggggggtacta
cccttgtcgaccgacgggggtgctccgctgaggttcgaaaaatggaccct
acgtgggactcgaaatttgcgaNGAAGGATTGATAGCTTGAAAGTTATGG
CTGTAAAGTAAACAAGAAGgaagaaatcgaaagtaaacaaaaaaaaacaa
aaaaaacagagaaaatGGATGGCATCTTTGGGAGAGTATTTGGCCCATGT
TTTAGGGGATGGATTCAACCAGAGCAAACAAACGGAAATAAGTATATTGA
TTATGCACCAAATAGGAAGTGGAAATATGATGACAAGAATTTGATCAAAG
AACTCACTAAAGATCAAGTCAACTCCTGGGATGTCATGGATCTAAATGaT
GAAGATTTAGATGTTAAAATTGCTTCCAATGGGAAATTACAACTTCATGA
CAATGTCTTCATAAATCCACTCAGTACCAATGAAGAGGACAACAACAATG
CCAACAAAGAGAAGGATGAAGCAGAAACAAGAGATGGTGTAACTGGCGAA
GTCAACCCCGTGAATGAAGAGTCAGAACAATCATTACAGAATGCATCTTC
TATTGAGGAAGATGTTACATCAAATAATAAAGGCACTAGTGAAAATGATG
GAGGGACCACTGATGTTGAATCTTCAATAGAGATGACTGTTAATGCTAAA
GGTGGGTCAGAGGATATCTCTTCAGGGAGTTCTGCTGAAGAAGCAGTTGT
CATTGATGAGGAAGTGAAACTAGTTGTCGAGGAAAAGGAAGAACCTGAAT
AGAGCTTAGACAAATTATGATACTCTACATATCTGATTAAAGTTCTAAGG
TTTTTGTTGGATACAGATTGGCAAAATGATATTGGGGTTGTTAAGATTTT
GAGGAGGTTGTTTCTCGAAATGATGTGAAGCCTCCTTCTTCATGTGATTG
TTCCAGCTTGTTCTGCTGCCCTATAAATGAGAATTAAAGTCtaacttttc
aaaataaataaacagacGATTGAAACCTTTAAAACAGATGCGAAGAATGA
GGCACATGGTGACAATAATCAAGGTTTTAAACAATTAAGTGTCAAATACT
GAGACGCTCTATTTATTGTTATGTAAGATTGAAGAAACTAGTTTAAATCA
ACAGTATAGTAAATTTTAGACTAAAATAATCTACCTtattggaagaaatt
ttggcgggaatttaatttggcggatggtcaaaaaagctttttcagaggga
atttaatttggcaaattgctgaaaaattaaatttggtaggaatttaattt
ggcggatgaacgATATTCTTGTCAAAAAACGCCATTGAATAAGAAAAACC
TGcgtaaggcctgaaatagcacacattttgggggaataaatatagtaatt
taaatttggcggatggtggaAAAATTAAGTTTGGCAGATTTTGACCaatt
ccgccaaattttctttccgccaaaattttttcGCTAAAGGTATTATTTAT
TGCAAGAagagccttcaaaaggcttttTTTCTTGGTGgttatatttttca
ttatttttattgGAAGGAATATAttattatcaattatttttttacacaaT
GATACCAGTAAATTAatctgaaattaaatttttccagTACCGATCCCTAT
TAAGACAATTTGTGTACTATGTCTTAGAATTATATTTTGCAATTTATTAT
TTTGCTATAATTTAGTAACAATTATTGATTATGGTATAGAGTATTTATAT
CGTTTTGGTGTGGTTGGGAATGTCAGTATTTATTCATTGATTTTGATGCA
AAAAGGGACACAAAAGATGCAgtgggatacaaaatcaaacggTCACATAA
ATTGTCAAAACAAAATTAATATAGCCgactttgaatttttctattaaGTA
TTATATTGCAAGTTTGTTTAGAGGCTTGATTTATGAAACTTATTGTTTAA
ATTTTAGTACTCTTATGTTCTAATTGACACAATTGTCTATCATAAAACGA
CTGTACATTAAGCCAAAAGTTATGCCTATATcacgaaattttgaaatgtt
tcccagtttAACTCTAAAGTTTTGGTAGTTTTCCCTAATTTTACAGCCTC
ATTTTTCCCAGCGTACTATCTTTCTGGTTGACCGGTAGATTGAATACCAT
TTGTTTTGTCAAACTTTTTAACAGTTTAGAATGATATTTAGAAAAAGAGG
AATTTCTTTGTTTTGTATATAATATTGACCTGGAATTTTTTGTTTATTTG
TTTGTTTGTTATTTTTTAGTATTTATTTGTTTCTTTCATTAAGTAATATC
TGTATATATTGCAACAATTTTAGGTTTTGAAAATATTACAATAATAAATT
GAATCTCGAAATTTTAATTAAGCAGAAATAATATAATTCTTCTCACGATA
TATTTAAGATAAAATTTTTTCGAATTGATTTTTATACCACTTTTATACAG
AATTTAATGACTTTGACTCATACCCAATTTTTCAGGTAATTGATTGCCC Run BLAST on NCBI transcript from alignment at scaffold_333:294415..300222- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060053 ID=TCONS_00060053|Name=TCONS_00060053|organism=Clytia hemisphaerica|type=transcript|length=5808bp|location=Sequence derived from alignment at scaffold_333:294415..300222- (Clytia hemisphaerica)
CAAGCTAGGATTGCATTCAGTTGATGCTACAATTTTTAAAAAGGGTGTAT
TTTTGCTTTTGGGTGTGGTTTTCGCGCGCGGGGGAAAAGGGAGACTGGAC
ATAATTAGGGCTGGTATACATTCTACAAATAATTTTTTTGAGGACATGTG
GAAAGGGGTATAAAAATAATAGTAGCTTGTTTTCAAGATGGCGGCGCCGA
AAATGATTCATTTTTGAGAAATCGAAGACGATTTTCTTTAAAACCACAAG
ACCAAACAAGAAATTAGATCATAAACTGCAGAAATTAAATCAGGCTCAGA
ATATTTATTTTACTTCCTACGNTTTGTTTTCAAGATGGCGGCGCCGAAAA
TGATTCATTTTTGAGAAATCGAAGACGATTTTCTCCCGGGGGGGGTACTA
CCCTTGTCGACCGACGGGGGTGCTCCGCTGAGGTTCGAAAAATGGACCCT
ACGTGGGACTCGAAATTTGCGANGAAGGATTGATAGCTTGAAAGTTATGG
CTGTAAAGTAAACAAGAAGGAAGAAATCGAAAGTAAACAAAAAAAAACAA
AAAAAACAGAGAAAATGGATGGCATCTTTGGGAGAGTATTTGGCCCATGT
TTTAGGGGATGGATTCAACCAGAGCAAACAAACGGAAATAAGTATATTGA
TTATGCACCAAATAGGAAGTGGTAAGTTATGTCTGGTTGGTCTGATCGTT
TGTCTTGTATCATTGTCTTTCTTCCCCACCACCCACCACATGTCTGCAGT
CTCCAGAAATTCATTTTCAAATTTTCAACTTTTAGTACCTTCTGATCTGT
GATTTGTCCTTGAAATTGATGCTACTTAAAAAGCTTGACAGCTCAGTGAA
AGTTATAGTTATAGACATTTTGTGGGTCAAGTTTCAATCAAAATAACTTT
TATTTGTCTGTTTGAAGAAAAATGATTTTAACAAGTTTAGTCATCACTCA
CCTTTTTGTTTCTGTTTTGTGTTATTGTTAGAGTAATCACATCAACTAGT
TTTGATTTTGTAGGAAATATGATGACAAGAATTTGATCAAAGAACTCACT
AAAGATCAAGTCAACTCCTGGGATGTCATGGATCTAAATGGTGAGTGAAT
TTTATTTTTTTCAGTTTTAGTCGATAATAAATCAAGAAGGAAGACTGTAC
GTTGCTGTTCTACCTTTATTGGATTTAGTTTTGAAGAGACATTTTGAGGT
CAAAATATATTAAACAAAGGTTTTTTCAAAGTTTTTGTGCAACTGGGAAA
TTGATCGTATATATTGGGGACCGTTACCAAAAATGTTTTCCTTTTTTTAA
CCGTTCAACTGTTTAAACAGGAGAGAGGGAGGCTGGTGATCAAGAAAAAA
AGAAATCCAGATCATTGGAAGAAAAGCTTTAAAATACTAGGAATTTTCAC
CAATCCACCACTTTGCTATACTTTCACGATCGTGAAGAAATGTTTTGTCC
CACAACTAAAATTCACAAATTTTCCTCTCTGCCCTCATAATAAGACCTTT
TCTTTTCCTAATATATAGTCATTTAGGAGAACACAACAGTCTATTTTAAC
AAGTTAATCCAGCCAGTACAAACAGAATAAATCATCTTGTACTTAGGAGT
TGTGTTGTAATTGATATTACGTTACCATTAAACAAATTTCTGCTGGAGTC
ATTCAAAAGAACGCTGCGTTCCCCCAAGCAACTATCGTAATGTAATGTCA
TGTTGAACGGTTATAATATACTGCAGTAATTAAGACAACATAAAACACCG
ACGTATGATTAATAAAAGTTTGTACTACTGTAAATTTCATATATATAGAT
ACAAACACAGGAACGAAAGAGCAGTTATTGGATTTTAAAATAATTTTGGC
GCAAATTCATCAAAATAACCTTTTTTTATAATTTTCAAAAATCCACCTCT
AATTAACTAACTAGACAGGAGAACTTGTCTTTTTATTTAAAAATCTGATG
TATACTTGACGGGTCGGAGCTGTGAGTCCATTTTTAGACTCAAAAACAAA
ATAGCTCATTTTCTTGCTGGACTCACTTGCTGAAGAAAAAAGTTTTATAA
TTTTAAAAAGTTTTTCCGAAAGTGAGCGTAGTAAACCCCGGCACAAAGAA
ACGTTTTGATTGGCAGATTCTTATCAAAATATCAGCCCCGACCATGCTTT
TCATTTCGCCATCAGTATATAAATAAGAAATCATAGCATGGATCTCCAGG
AGTGCTAATTAACTTACAAAAAGGCTCATTTATGAGGCCCCCAGCAGTTT
GCGTGATGGCGTGATTGGGACTTTTTTCTTGCGTGATGGCGTGATTAGAG
ATTTTTTTTGGCATGATGGCGTGATCAAGATTTCGGCGTGATGCGTGATA
GGGCAAAAATTTGAGGCGTGATGCGTGATTTGGGCTATTTTTGCTATTTT
TTGTGTGATGACAAATTTTGGCGATTTTTGTGATGCGTGATGGAGAATAT
CTTTTTGCATGATGTCGTGATTAGGGGTGCCGCTGGGGGAGCCTCATTTA
TAGCTCTCCTTGAAATAAAAAAAATGTGTTATTGTACTTGCCAAAATAAG
TTTTGCTAGAATTTAAAAATTTAGTTTCCTTAAAAGCTTTATGCTTTGTT
CTTTTAAAAAAGACAAGGCATATTCTGTATTAGGCTATGTACATCCCCAA
GATTGATTTTGATATATGGGATGTGTATGGTGTATAATATTCACGTCCAA
GAGTTAGCCCAGTTGGGGTAACCTGTTTCAATTTATAGTGAGTCCAGAAG
ATTGACAATTTCACATATTCAAGTTATGGTGTAATAATTGTCTGTGATTT
AATTTTTGCTCTGCTTTTTTTACTAAAAACAAAATTGCAATGACAATATA
CTCCACAAAAACACAAAGACAAGGTAACCCTCCAGACATGATATGCATCC
ATAGGGGATGTCATCAAAACATATCCTAGAGAGAATGTGAAATAAATGTG
ATGTGAAAAGTAAAACCTGTCTTGAATATTAAGGGATCTATGTAAAACGT
TAGTATAAGCAAACTTGTTTTACCACTATGAATTAGGGAGCTCAGATCAA
TGTTGTCATTTAATAAGAAGTTGTTTTCTGTGCAATTCACAGCAGGAATT
ATTTGCAATCAACAAAATAAGGGTTTTTAAAAAGATAACTTGTTATAATA
CTTGGTTATCCTTTTAATGATTCTTCATAGTCAATTATTTGAAAATTTTC
AAGTTTATTGTTTTTTCCTAATGAGAATGCCATTAACAATAAAAAACTAG
CTTCTATAGATCTTGGTAATAATTTTTCTGGCCTTTGATAATAAAACTGT
TTTATTGAAAATAGGTTATTGTTTACCAAATTTGTTTACAACTTAGCTAA
TTATAGTTTAGATCTCTTTGGAAATACTTCAAGTTTAAACCCTTTACAAC
AACATGGTCATGCCAGTGTATAATTGGAAAAATAAATATTAAAATTTTGT
TGAATTCAATTATTTCAAAAATATTTTTTAGAAGATGAAGATTTAGATGT
TAAAATTGCTTCCAATGGGAAATTACAACTTCATGACAATGTCTTCATAA
AGTAAGTTACAAATTACACTAGCTTTTTGAACTGCTAATTCTACACGCTT
TTTTATAAGAACCAGTAAGTTTTGGTATAGGCTGAACTGATCTTAATCTT
TTTAATTTTTCATGCATAAAAAGTTCTTACGACGTTGATATGCTTAGCTA
TCACATGGTAGATATAAAATAAAATTTATTAAAACTTATGAATTTACTTT
TGACTATTTTTGCATCTTTATCAGTCCACTCAGTACCAATGAAGAGGACA
ACAACAATGCCAACAAAGAGAAGGATGAAGCAGAAACAAGAGATGGTGTA
ACTGGCGAAGTCAACCCCGTGAATGAAGAGTCAGAACAATCATTACAGAA
TGCATCTTCTATTGAGGAAGATGTTACATCAAATAATAAAGGCACTAGTG
AAAATGATGGAGGGACCACTGATGTTGAATCTTCAATAGAGATGACTGTT
AATGCTAAAGGTGGGTCAGAGGATATCTCTTCAGGGAGTTCTGCTGAAGA
AGCAGTTGTCATTGATGAGGAAGTGAAACTAGTTGTCGAGGAAAAGGAAG
AACCTGAATAGAGCTTAGACAAATTATGATACTCTACATATCTGATTAAA
GTTCTAAGGTTTTTGTTGGATACAGATTGGCAAAATGATATTGGGGTTGT
TAAGATTTTGAGGAGGTTGTTTCTCGAAATGATGTGAAGCCTCCTTCTTC
ATGTGATTGTTCCAGCTTGTTCTGCTGCCCTATAAATGAGAATTAAAGTC
TAACTTTTCAAAATAAATAAACAGACGATTGAAACCTTTAAAACAGATGC
GAAGAATGAGGCACATGGTGACAATAATCAAGGTTTTAAACAATTAAGTG
TCAAATACTGAGACGCTCTATTTATTGTTATGTAAGATTGAAGAAACTAG
TTTAAATCAACAGTATAGTAAATTTTAGACTAAAATAATCTACCTTATTG
GAAGAAATTTTGGCGGGAATTTAATTTGGCGGATGGTCAAAAAAGCTTTT
TCAGAGGGAATTTAATTTGGCAAATTGCTGAAAAATTAAATTTGGTAGGA
ATTTAATTTGGCGGATGAACGATATTCTTGTCAAAAAACGCCATTGAATA
AGAAAAACCTGCGTAAGGCCTGAAATAGCACACATTTTGGGGGAATAAAT
ATAGTAATTTAAATTTGGCGGATGGTGGAAAAATTAAGTTTGGCAGATTT
TGACCAATTCCGCCAAATTTTCTTTCCGCCAAAATTTTTTCGCTAAAGGT
ATTATTTATTGCAAGAAGAGCCTTCAAAAGGCTTTTTTTCTTGGTGGTTA
TATTTTTCATTATTTTTATTGGAAGGAATATATTATTATCAATTATTTTT
TTACACAATGATACCAGTAAATTAATCTGAAATTAAATTTTTCCAGTACC
GATCCCTATTAAGACAATTTGTGTACTATGTCTTAGAATTATATTTTGCA
ATTTATTATTTTGCTATAATTTAGTAACAATTATTGATTATGGTATAGAG
TATTTATATCGTTTTGGTGTGGTTGGGAATGTCAGTATTTATTCATTGAT
TTTGATGCAAAAAGGGACACAAAAGATGCAGTGGGATACAAAATCAAACG
GTCACATAAATTGTCAAAACAAAATTAATATAGCCGACTTTGAATTTTTC
TATTAAGTATTATATTGCAAGTTTGTTTAGAGGCTTGATTTATGAAACTT
ATTGTTTAAATTTTAGTACTCTTATGTTCTAATTGACACAATTGTCTATC
ATAAAACGACTGTACATTAAGCCAAAAGTTATGCCTATATCACGAAATTT
TGAAATGTTTCCCAGTTTAACTCTAAAGTTTTGGTAGTTTTCCCTAATTT
TACAGCCTCATTTTTCCCAGCGTACTATCTTTCTGGTTGACCGGTAGATT
GAATACCATTTGTTTTGTCAAACTTTTTAACAGTTTAGAATGATATTTAG
AAAAAGAGGAATTTCTTTGTTTTGTATATAATATTGACCTGGAATTTTTT
GTTTATTTGTTTGTTTGTTATTTTTTAGTATTTATTTGTTTCTTTCATTA
AGTAATATCTGTATATATTGCAACAATTTTAGGTTTTGAAAATATTACAA
TAATAAATTGAATCTCGAAATTTTAATTAAGCAGAAATAATATAATTCTT
CTCACGATATATTTAAGATAAAATTTTTTCGAATTGATTTTTATACCACT
TTTATACAGAATTTAATGACTTTGACTCATACCCAATTTTTCAGGTAATT
GATTGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060053-exon-scaffold_333-1575043694:299552..300222 | TCONS_00060053-exon-scaffold_333-1575043694:299552..300222 | Clytia hemisphaerica | exon |
| TCONS_00060053-exon-scaffold_333-1575043694:299133..299209 | TCONS_00060053-exon-scaffold_333-1575043694:299133..299209 | Clytia hemisphaerica | exon |
| TCONS_00060053-exon-scaffold_333-1575043694:296672..296738 | TCONS_00060053-exon-scaffold_333-1575043694:296672..296738 | Clytia hemisphaerica | exon |
| TCONS_00060053-exon-scaffold_333-1575043694:294415..296448 | TCONS_00060053-exon-scaffold_333-1575043694:294415..296448 | Clytia hemisphaerica | exon |
| TCONS_00060053-exon-scaffold_333-1510915933:299552..300222 | TCONS_00060053-exon-scaffold_333-1510915933:299552..300222 | Clytia hemisphaerica | exon |
| TCONS_00060053-exon-scaffold_333-1510915933:299133..299209 | TCONS_00060053-exon-scaffold_333-1510915933:299133..299209 | Clytia hemisphaerica | exon |
| TCONS_00060053-exon-scaffold_333-1510915933:296672..296738 | TCONS_00060053-exon-scaffold_333-1510915933:296672..296738 | Clytia hemisphaerica | exon |
| TCONS_00060053-exon-scaffold_333-1510915933:294415..296448 | TCONS_00060053-exon-scaffold_333-1510915933:294415..296448 | Clytia hemisphaerica | exon |
| TCONS_00060053-exon-scaffold_333-1491911889:299552..300222 | TCONS_00060053-exon-scaffold_333-1491911889:299552..300222 | Clytia hemisphaerica | exon |
| TCONS_00060053-exon-scaffold_333-1491911889:299133..299209 | TCONS_00060053-exon-scaffold_333-1491911889:299133..299209 | Clytia hemisphaerica | exon |
| TCONS_00060053-exon-scaffold_333-1491911889:296672..296738 | TCONS_00060053-exon-scaffold_333-1491911889:296672..296738 | Clytia hemisphaerica | exon |
| TCONS_00060053-exon-scaffold_333-1491911889:294415..296448 | TCONS_00060053-exon-scaffold_333-1491911889:294415..296448 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_333 | supercontig | scaffold_333:294415..300222 - |
Blast
The following BLAST results are available for this feature:
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