TCONS_00060060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060060
Unique NameTCONS_00060060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1060

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060060 ID=TCONS_00060060|Name=TCONS_00060060|organism=Clytia hemisphaerica|type=transcript|length=1060bp
ACCATGGACAAATCATATAAATTAAACTTTTAGTAAATTCTAAAAAGCAT
TTTCTGTTGGtatgatttttataatttttttgagttaTTCGACATTTTAT
ATGGTCTATTCACAGGATGGGCAATATTTTGGCGTCACAGACAACATGAA
AATTCTTGTTGATCAAAATTCAGTATTGGATACTTTAACAGCAGattcaa
ttttgatttgttcACATCGTTGTCAGTTACATAGTGAATGTAAGAACGCC
AATTATATGGCAGAAACTGGTGAATGTCAATTACTAGTGGAAATTGACGA
TCGTGATATCAATCAACAATCCGAAGACGCCGAAGGATTCATCAAGCTGA
CAAAGTTTCAATGCAGTTCGGATTCTTCTGAAGATACCGAAAGTTCTTCT
TCAAATGGAATCACCAAAACAGATGATAAAGTTTCTTTTACATCAGAGAT
AACACCTGAGAATGGAAAATTGCTTGGATCATtcccaaaacaaacaaaaa
gctgGAAAATAGAGATGGACATAAAAGTGCTTTCAACTGGAACTTCAACG
AGTACTAACATATTGCGTATGGTTGAGAAAGAAAGTGGCTCACTATTGAA
TAATCCAGGACTCATGTTGCATAAGAGTTCACCAGATGTCATGCTCAAAT
TAGCAACTGATGGACAGCCGAATAAAAGCCTTGGTAAAGTTGCGACCTTA
AAACTAAATCAATTCGTTCACCTATCAATCAAGGTTGAAAGAgatcttat
aaaaacaaaccatCATAAATTAACCGTGCATGTAGATTTTGTCCAATCGT
TTGAACGTATTCACAGTCATGCAGAAACATATGTCGATGTAGAATTATAT
TTCTCCTCTGGTTCTTCAAAGGCTGCTAATGTtgttgtcaaaaactttgt
ctttgaaaatttgggAGAATGAAATGATATGAAGCACCAAAATCAAGTGa
tacgtaatagttatcggacagttgcgagtacaatatgggatatgCGAGTa
caaaatatacggaaaatccggaacgagtgaaatattttcatattgtacga
gaaaatgtct
Run BLAST on NCBI

transcript from alignment at scaffold_333:373918..380140-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060060 ID=TCONS_00060060|Name=TCONS_00060060|organism=Clytia hemisphaerica|type=transcript|length=6223bp|location=Sequence derived from alignment at scaffold_333:373918..380140- (Clytia hemisphaerica)
ACCATGGACAAATCATATAAATTAAACTTTTAGTAAATTCTAAAAAGCAT
TTTCTGTTGGTATGATTTTTATAATTTTTTTGAGTTATTCGACATTTTAT
ATGGTCTATTCACAGGATGGGCAATATTTTGGCGTCACAGACAACATGAA
AATTCTTGTTGATCAAAATTCAGTATTGGATACTTTAACAGCAGATTCAA
TTTTGATTTGTTCACATCGTTGTCAGTTACATAGTGAATGTAAGAACGCC
AATTATATGGCAGAAACTGGTGAATGTCAATTACTAGTGGAAATTGACGA
TCGTGATATCAATCAACAATCCGAAGACGCCGAAGGATTCATCAAGCTGA
CAAAGGTATATCAATTTCTTTCATATCGGTGCAAACAGAAATTAAAGGTT
TTATACTATATGCCTATCAAATCAAACATAGTCCCTTTCCTTTAAAAAAC
CCTGATTTGGTAACTGCTATTGTGGAAGCTTCTTCTTCCTCAATTGACGC
AGTTTTTGATCACGTTACCAAATACTCCGCATGGGATTGGTTCGAAACTT
AAACACATGATGAAAAAAGTGAGCAAAACAAACTGGTTTCTCAAGGCAAG
TGTAAGTTAAAACCATAGTTAATCGTAGAAGGAAAATAATAGACTTCCAG
ACCGGGGTTTTTTATATGGACTTTGATTCAAATGAAGACAATTCTAACTA
GATTAAGTTTCTAGATACCCTGGTGAAACCCGGCCCCGTTTGCCAAAATT
TTATCATCGTAGGAAAAGATACCCTGCAATATCAGCCCCACAGGAAAATT
GACTTTGATTTCATCCACATTGAAAATTCGATTTAAAGAATTGCACTCCA
AAACCATCCCAACTTGAATTTTTAGCTTTGAAAGAATAGAATTTATCCAT
ACTCTTAGGTGCCAAATAACCCCCCCCCCCCCCCTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTTTCAGCTTCTAAACGTACTCAAATTTCCTCATGGGCCA
CCCGGTAGACAAAAACAAAATTTTAAATGAACACAATTTCACCATTATTT
TAGAGATAACACCTGAGAATGGAAAATTGCTTGGATCATTCCCAAAACAA
ACAAAAAGCTGGAAAATAGAGATGGACATAAAAGNCAACCCCCCGGCAAT
TAGGTCGCCCCTTCCCTGTTTATTTGGCACCTAAAAGTACTCATGCTCTT
GGAAAAACTTCTAACGGGGTATCGGAACAGATTTATGATATTATCAAATT
CTTTATTTTTTTGACAGTTTCAATGCAGTTCGGATTCTTCTGAAGATACC
GAAAGTTCTTCTTCAAATGGAATCACCAAAACAGATGATAAAGTTTCTTT
TACATCAGGTGTGTAGAGTATCCATGGTCTTGATTTTTCAAAAACTTGAA
ACCCTTTTTTCATACACACGGTGACACGCCTATATTTAGATACTATAAGA
CACTGCCAGTCTCCAATGGATTTGAAAATCCCTATCTATTGAAATTGGGA
ATGTACCTTATCGGGGTAAAATTTCGTTACCTAGAGGCATTTTCGTCGCT
TTCCCCCAACCAAAATTTCAAATTCGTCACTTTTCCCCGACGAAATTTAC
AATTTGTGTCTTAAACTTTAAGAGCTCGTTTACGAATTTAATAATACTCT
ATGTACTTTAGGACACTTTTTCAGCTTCTAAACGTACTCAAATTTCCTCA
TGGGCCACCCGGTAGACAAAAACAAAATTTTAAATGAACACAATTTCACC
ATTATTTTAGAGATAACACCTGAGAATGGAAAATTGCTTGGATCATTCCC
AAAACAAACAAAAAGCTGGAAAATAGAGATGGACATAAAAGTGCTTTCAA
CTGGAACTTCAACGAGTACTAACATATTGCGTATGGTTGAGAAAGAAAGT
GGCTCACTATTGAATAATCCAGGTAAGACCACCCTGTGTCCCCTGATGTC
GCAGAGTTCGGTAGGACTTCAGCACCACTACACGTTTTTCTATAAGAACA
TCCAAAAATTTTTAAAACCTTTGGATATTCTTAACTTTTGGAGTCTTAAG
GCTAAAAATGTTCTTAATATGTTCTAATTTTGACAAATTATGAGCATTTT
TGGCCATTTTCCTAAGAAGTCGGGTGTTTTGGAGTCCCCAAAGCCTTAAA
ATGTTCTTAACTCGTTCTTAACATTTCGGTGAAGCCTTATGTTCTTATAT
AGTTTGTTCTTATAAAAAACGTGTAGACAGTTTAGCCAAACCTTCGTCCC
TGTTAGGAAATTAACTCTTATTTCATCTCAATTTGAAATTCAATAGAAAA
ATATACTCACTGACCTTTATATATCCCTGGACCAAGTTACTCAATGCCGG
CCAAGCAAAATATTATGATCGGAGTTTTTTTTTAATTGGTACCCGCGGAG
AGAGCGCTAGATCTAGTTTCGCTAGTAAACTAATGATGTAGTGCCGTTTG
TCGTTAGGCAAAGTTTCAAACACTACAATGACTTCTTTGTGGGTACCAAC
TTTCAAAATAAACTTCGATCAAAGATGGCGGATATAGCTTGGTCCAGGGA
TATATAAAGGTCAGTGGTTATACTATAAAACCATCCCCAGTGAATCTTTT
GAGCTTCTTGTTAGCTTGGGACAATATCATCCCTATTTAGATTTCGATAA
ATTTTTATCCCCACTGTGGAAAAAAATGTTCCACCGGTGCACAAAGAAAA
GGGGCGCGTGTGACATGTAACCATTCTGTGTCTTAGCAGTAAAATTCTTC
CGTTGGGTAAGGAAAACGAGAGTTTCTAAACATCGACCAGAAATGGCGAC
CACGACCATCGACCATGACCGGCGACCAGATAAATTTGGATTATCAAGTT
TATCTGCTCTCTCCACCGTAGAGAATGTTTAAATCAAGTCCTCAGAATAC
AAAAAAGTGACCTTTGAATTAAGCAGTCATTTTCTTGACAAAGTGACACT
ATTTGACAAAAATATTGACAGGGTATGCCGGCCATTCTGTAGCAATATTC
AATCTTTCGAATATTTAGTTCAATCCAATCCCCATATTTAGTTCAATCCC
TATATTTCGTTCAATCCAATCCCAATATTTTATTCAACCCCTATATTTCG
TTCAATCCAATCCCGATATTTTATTCAATCCAATCCCGATATTTCATTCA
ATCTTTTTTTTAATTCAATCTTTTTTTTCATTCAATCTTTTTTTTTATTC
AATCTTTTTTTTATTCAATCTTTTTTTTTATTCATTCTTTTTTTTTTTTT
TCAATCTTTTTTTCATTCAATCTTTTTTTTAATTCAATCTTTTTTTTCAT
TCAATCTTTTTTTTTATTCAATCTTTTTTTTATTCAATCTTTTTTTTTTT
ATTCAATCTTTTTTTCATTCAATCTTTTTTTTTTATTCAATCTTTTTTTT
ATTCAATCTTTTTTTTTATTCAAGGCGTATTAACATCACTCCAGAATGTT
CCTAATGATGAGGAGGAGCTGTTGTATCAATGCCATCGTGTTGACGAGCT
TTTAAGATTATTAAGACATAGTATATATTAATATTAATATTAGTAATAGT
ATTATTTATCTGACTTAGAGAACGATGCGATCTCCTAACATCCCTAACAT
ACTTGAGTCAGATCCGACTAAACTTTTACGTCTTAAATCACTTCAAACCA
TGTGGAAACTGCATTAGGGAGATAATAATTACGCTCGTACCCAGGAAGAT
TGAATGAAAAATAAAGATTGAAAAAAAAAAAGATTGAATAAAAAAAAAAG
ATTGAATAAAAAAAAAGATTGAATAAAAAAAAGATTGAATAAAAAAAAGA
TTGAATGAAAAAAGATTGAATTAAAAAAAATATTGAAAAAAAAGATTGAA
TGAAATATCGGGATTGGATTGAATGAAATATCGGGATTGGATTGAATAAA
ATATAGGGATTGGATTGAATGAAATATTGGGATTGGATTGAACGAAATAT
AGGGATTGAACTAAATATGGGGATTGGATTGAACTAAATATCGGCATTAA
GGATTGGATTGAACTAAATATTCGAAAGATTGAATATTGCTACAGAATGG
CCGGCATACAGGGTCATTAAGTATGATGTTTGTAAGCTTTGTTACTTTGA
TTATGCTGAATGAGATGCCTTTAGTATGAATAGATAGAACTTATCAGGAG
GAAAACATTATAAAGGCCAGTTTTAGAGATATGAATCTAATCAATTATTT
TATTGTCTTAATGCTGACAAAATGACTAATTTCGACAGAAATAACAATCT
GATGATGAATACAAAGCTTCTCTAAACCATTTTCAAAAAATTATGTGCCA
CCAATTATTTTGATGCTGATAATACAAAAGGATATAAATGGAAACCATAA
TCAAGCTCCAAGAGCGTCGAACTGGCTGTTTTACGTATTCGACACGTAGC
TTTAAATAGATGAGACAGGGGTGAGCTTACTCTTCAATATGATATATATT
CAATTGATTTATAAAATGTATCAAAAGAAATTCTAAGCTCGCCCGATGAA
AGAAGAATTTTTAGTAGAACTCAAGTTTGCTCTGAACATTCTAATTATCA
GTATTGAAGATTCTAACCTTTTAATATACGAAAATTTAGATAAAACTTCG
TCCACGAAACAAGTTTATGTTCCATTTCGTTATCCGTTCAATTTTGTTTT
GAAAAGATATTTTCTCAAGCCAGAAAATGAAAATTTCTTTATAAGCACAC
ACGATTTCAGACTCAATTTGTAGACATAAAGTCGCTGGAGAATTTTGGAG
GAAAGTATCAACCAATAGAGTTCACCTTAAAGAAAACATTGATCGAAAAA
TCTTATCATTTGATGAAGGATTGTCAAGTTTACAGGCCTTTTTTTAGTCC
AAATATTTTCTTACACTGATGTCAGAAACAATGAATCTCGTCTCATCTAA
TTTCTAAAGCTTAAATGAGCCAATAAAATTTCACCTATAGATAAAAGAGC
TCATTAAAAATGCACGATATGTAAGATTATGAGCATGCATACATCGTAAC
TTTTTTAATCGTAGGGCGAGCTTGGTTACAATAGCATTCTTCTTCTGTTT
TTTTATACTTCTATGGAGAAACACTCTACGTTGGAGAATGGGGAAAACTT
GACAACCCAAATTTATCTGGTCGCCGGACGTGGTCGCCGGTCGTGGTCGT
CATTTCTGGTCGACGTTTAGAAACTCCCAAGGAAAACCTTTTAACAGAAA
ACCTTTTTGGACAGATAATAAGTTGAGTTCTTTGGGAATGAACCTCCTGC
AACCACGACCCTTTGAGAGACTAAATATTTGCAAAATAGTTACCTTTAGA
GAGATAGAATAGGCGAGAGGCGATCCTTAGAAAGACAAATTTCGAAAATT
TTTCTTGATGGGACCCAAAGGGGGAAATCAAGACCCTCGGAGGGACTATT
TTGACGTTTTACTGTTTCTGCAACCCTTTAAATGTTTTAGATTAAGGTGA
AAGAACGAGGTCCGCAAAACACTCCTACTTAAATCTTGTTGCTTTGATTT
TCTTTTTGTATTTGAAAAACACGTGTATATTTTTCACATCACTAGCACTT
TTTTGTTCTATTTCATCCTAGTTTAATATTCGAGGAGATCTTAGTCCAAA
TTAGATTTTAATGTGAACTGCTAAAGCCAGAATATACAACTATTTCAAAC
TTTGAATCTTCTATTCTTTAGGACTCATGTTGCATAAGAGTTCACCAGAT
GTCATGCTCAAATTAGCAACTGATGGACAGCCGAATAAAAGCCTTGGTAA
AGTTGCGACCTTAAAACTAAATCAATTCGTTCACCTATCAATCAAGGTTG
AAAGAGATCTTATAAAAACAAACCATCATAAATTAACCGTGCATGTAGAT
TTTGTCCAATCGTTTGAACGTATTCACAGTCATGCAGAAACATATGTCGA
TGTAGAATTATATTTCTCCTCTGGTTCTTCAAAGGCTGCTAATGTTGTTG
TCAAAAACTTTGTCTTTGAAAATTTGGGAGAATGAAATGATATGAAGCAC
CAAAATCAAGTGATACGTAATAGTTATCGGACAGTTGCGAGTACAATATG
GGATATGCGAGTACAAAATATACGGAAAATCCGGAACGAGTGAAATATTT
TCATATTGTACGAGAAAATGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037777XLOC_037777Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060060-exon-scaffold_333-1575043694:379786..380140TCONS_00060060-exon-scaffold_333-1575043694:379786..380140Clytia hemisphaericaexon
TCONS_00060060-exon-scaffold_333-1575043694:378683..378773TCONS_00060060-exon-scaffold_333-1575043694:378683..378773Clytia hemisphaericaexon
TCONS_00060060-exon-scaffold_333-1575043694:378119..378280TCONS_00060060-exon-scaffold_333-1575043694:378119..378280Clytia hemisphaericaexon
TCONS_00060060-exon-scaffold_333-1575043694:373918..374369TCONS_00060060-exon-scaffold_333-1575043694:373918..374369Clytia hemisphaericaexon
TCONS_00060060-exon-scaffold_333-1510915933:379786..380140TCONS_00060060-exon-scaffold_333-1510915933:379786..380140Clytia hemisphaericaexon
TCONS_00060060-exon-scaffold_333-1510915933:378683..378773TCONS_00060060-exon-scaffold_333-1510915933:378683..378773Clytia hemisphaericaexon
TCONS_00060060-exon-scaffold_333-1510915933:378119..378280TCONS_00060060-exon-scaffold_333-1510915933:378119..378280Clytia hemisphaericaexon
TCONS_00060060-exon-scaffold_333-1510915933:373918..374369TCONS_00060060-exon-scaffold_333-1510915933:373918..374369Clytia hemisphaericaexon
TCONS_00060060-exon-scaffold_333-1491911889:379786..380140TCONS_00060060-exon-scaffold_333-1491911889:379786..380140Clytia hemisphaericaexon
TCONS_00060060-exon-scaffold_333-1491911889:378683..378773TCONS_00060060-exon-scaffold_333-1491911889:378683..378773Clytia hemisphaericaexon
TCONS_00060060-exon-scaffold_333-1491911889:378119..378280TCONS_00060060-exon-scaffold_333-1491911889:378119..378280Clytia hemisphaericaexon
TCONS_00060060-exon-scaffold_333-1491911889:373918..374369TCONS_00060060-exon-scaffold_333-1491911889:373918..374369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:373918..380140 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0406538	0.0475088	0.230904	0.565529	0.444263	0	0.250891	0.140524	0.0875555	0.042237	0.0737002	0.221811	0.0287941	0	0.0508088	0.907969	0.470554	0.132951	0.109543	1.33445	1.48866	0.619168	1.4341	1.20309	2.29797	0.171643	0	0.0925441	0.141432
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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