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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060063 ID=TCONS_00060063|Name=TCONS_00060063|organism=Clytia hemisphaerica|type=transcript|length=2698bp
GTGTATGATTTGGTTTGACATACGTACAATCGCATACTGTAATCGTCTCc
cttttcgttttttattttaggtGTTTTAACAGAATTAAAAGGAGGTATCA
TGGGATTGAACCGTGGATGAacaagtttcaatttttttttaaaacataca
aaTAAAGTCTATACAAGTGATTACAATCTGGAGTTAAAAGCAATGGCAAA
GAATTCATCCTCCTTGGAGCATCGGAATAAATTTGAaccgaattattttt
atcaatttcgtTTGATATTGATTGGAGACAGTACTGTTGGGAAGTCATCA
TTATTAAGACAATTTACTGAAGGACAATTTATACAAGCTTCAGATCCAAC
AGTTGGTGTTGATTTTCATGTGCGAATCATTGAATTGAACGaTAAAGTGC
GTGTCAAACTGCAGCTTTGGGATACAGCTGGACAAGAACGTTTCCGGTCT
ATAACCCGGTCATATTATCGGAATTGTGCTGGTTGTCTAGTTGTATATGA
TATCACAAATCGAGAATCGTTCGATCACGTGAAAGAATGGCTGGAAGAAG
CACGTTATGCTACGGAGGACCAAGATATAGTATATTGTTTAATCGGACAT
AAAGTTGACTTAGACTATCGTAGGGAAGTCTCCACTTCAGAAGGAGAGGC
TTTTGCGAATGCACATGGTATGACTTTTATAGAAACTTCTGCTAAGATAT
TATGTAACGTTGAAGAGTCGTTTATAAGTGTTGCACGTGAGATATACTCT
AGACTTGAACTTGGACAAATAGCTCAAAAAGATGGATGGGACGGTGTAAA
AACGGTACCTTTTCGCCCTGGTAATGTTTATTTATCACAAGAAACCCTTA
ATGAAACAAATCAGAACGATAAGAAATGTTGCCGGTGAACCTATTACTAC
TTATGATTTTTTAGGTATTCGTCTGATTTTAAAGATTAGAGATCGCAAAG
ATATTATATTGTTCGACGTTTAATCATCAAGCTCTGCAGAGCTCtgtctt
cattttatttttgctaTAAAACGACGAAGTTTCTCTGGAGTAGATAAATG
GAAGAGTGTTCGAAATAAAAATCGGACAAAAAGGAGTAAGATCACAGAAT
AACTTAAATAAAACACTAGATggagctactctgtatttcccaagcagcGG
CAGTTGAAACAAAATAATGTGCCATCTATGTTGAGTACTTTTGGTACCGG
NAGCGGCAGTCGAAGCAAAATAATCTGCCATCTTTGCTGAGTACTTTTGG
TACCGCCAATTTGttcaaccaaacaaaaatacCTGCATGACGCGAAGCGA
CGGGGCGAGagaatacacaggttgcaaaatgaaagtctgaagacaaatca
cgcttttactcgaaatttttatgggCGTATTGCATGACAttttttctgat
tggttcaaaaatttcagccaaaaaagaTCCAAATTCATGTCTTCTGCATA
AAATACGCGAGGGTGATCCAAGTAACATGGTAAACATTTCGAGTAaccac
atgttttgactgcactgaTTAAATTgtgcaacccgtgtattgacTTGATC
ATtcaaattgccggcaccgaactaTGGCCTACTTGTCAAAGATGGCGGAA
TATTTTACCTCAGTTAGGGATAAATAAGATTCATGTAGTGTTATatataa
gatatttttgagtTCGATCCATTCAAAGTCTATGGAAAGTAATGAGATCC
ATTTTCGAATTTCAACACCTCTTTTCCAATGccttcttttccttttttac
gGTCAgctctccctaattcgaatggaaattcaatttttcttcaattcAGA
AAAcgtttcgaattatagaaagtattcaCTTGACAGGAGCTTGAAATGGA
GAAAGATTCACATAATTCTTTGGCTCGAATCAGcggaaatttttatttct
tccttattttttttttacattttacccTTATCTTTAGATAGAAATTTTCT
AGATCTTGAGTTCCATTTTTATCTGATTTCTTACCCTTTTGTGCAACCAA
AGAATGGTTTTATTCATCACGCCTAGTGTCCAGAAACCTTGGTAACCGTG
ATTCCCTCAAATAAGATTTTTAGATCTTTACTCTCGGGTACCTAATAGGG
TTTGGAATAAGCCCCCACCTTCCGGGTTGGAAAAATCTCAAAAATTAATA
AAAAATTAATAAAATAAATAAAAATGTCTTGGGTAGAAAAATAAATTAGC
CCCCCCCCCTGCTATTAGGTACCCGAGAGTAGATTTTTCAGGTTTTAGGT
GTGGTTCTCTTTTCAAATTTGAACCTAAAGCTAAAAAAACACGTACTTTT
ACTACAATAGTTATGGTTCTTTGTagctaaaacaaaattttgtaaggctg
ctggcatccactaatcGATTCGTGCCCCTTTTACCTTTTACTACATGTGG
TTTTgcagaggtctgcgattcagactaaaaaTTTTGTTGAGATATTGGTT
tgcttttgtgttttgtttatttttttcgaaagattttatGAGAATTTGTA
CATTGAATTATAATAGGTATTATATAGAATTTCTATATGTATAATATTAT
CAATATTATTGTCagtaaaagttgtttttatcaGTGTATCCCAGTGTAAG
AATGGGTACTGaccacatacacgttttttcttttataacgtttataagca
tatacaggctcagtttttggtacacaaacaatggctctattgtttgag Run BLAST on NCBI protein sequence of TCONS_00060063-protein >TCONS_00060063-protein ID=TCONS_00060063-protein|Name=TCONS_00060063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MAKNSSSLEHRNKFEPNYFYQFRLILIGDSTVGKSSLLRQFTEGQFIQAS
DPTVGVDFHVRIIELNDKVRVKLQLWDTAGQERFRSITRSYYRNCAGCLV
VYDITNRESFDHVKEWLEEARYATEDQDIVYCLIGHKVDLDYRREVSTSE
GEAFANAHGMTFIETSAKILCNVEESFISVAREIYSRLELGQIAQKDGWD
GVKTVPFRPGNVYLSQETLNETNQNDKKCCR Run BLAST on NCBI transcript from alignment at scaffold_333:438663..443134- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060063 ID=TCONS_00060063|Name=TCONS_00060063|organism=Clytia hemisphaerica|type=transcript|length=4472bp|location=Sequence derived from alignment at scaffold_333:438663..443134- (Clytia hemisphaerica)
GTGTATGATTTGGTTTGACATACGTACAATCGCATACTGTAATCGTCTCC
CTTTTCGTTTTTTATTTTAGGTGTTTTAACAGAATTAAAAGGAGGTATCA
TGGGATTGAACCGTGGATGAACAAGTTTCAATTTTTTTTTAAAACATACA
AATAAAGTCTATACAAGTGATTACAATCTGGAGTTAAAAGCAATGGCAAA
GAATTCATCCTCCTTGGAGCATCGGAATAAATTTGAACCGAATTATTTTT
ATCAATTTCGTTTGATATTGATTGGAGACAGTACTGTTGGGAAGTCATCA
TTATTAAGACAATTTACTGAAGGACAATTTATACAAGCTTCAGATCCAAC
AGTTGGTGTTGATTTTCATGTGCGAATCATTGAATTGAACGGTAAATTTA
TACATTATTATGTGTATTCTGTCGCGATGAAGAGGCCTCGTTTTTGTCAC
TATCAATTGCCTCTTTGCTTTCCATGTGCTGCTCTTTTTTCGAATACTTC
AAATGAACCCATTTACTCTTACTATCTTCCTTTGCTATTACTATCGTTCG
ATAGTAAGACTTGAGTGCAGGGTAGAAGCAGTTGTCCGCAATCTCATTGT
TTGAGCTAGATGTTCCAAAAGCACGTGTTCTTTTGGCGACGAGTCATGCA
CCTTCCGTAAAGGGGTATATACACATACCTAGGTCATAGCTTACTGCTCA
AGAAGGCTTCTCATGCGATTAGGTAGCTATGGAAATCACTCGATAACGAC
ACAAGTGAATGTCCATACTTTTTTGACGTCATTATCTTATTAGAGAATAT
CTATAGAATTACTTCGTTAAAAAGCTCTTAATAAACCTGATTGAATTAAC
GCTGATATGATTGACGAACAGCTCGCGTCATGGCTCAAGTCTTTACAACT
TTGTCGAGAATACTTAAAATGCCAGGATTAAACCTTGATAAAGCTTGGCT
TTTAACACAACACCATTTTAATAACACGAAAACCCGCAACATACTCTATG
TTTACTTTTTATATTTATTCGTTGAAAATCTTGTTTGTCTTAAACTAACA
ATAAGTCAAACCATTAAAGTATAAACTGTACGGAGCCATATCACGTCATG
AACATACATAGACTGTATGTATGGGGCCCATTTTTCTATTTCCCTTACCT
TTAAATGTGTCTCATGTTGAATATTTCCAAGAAGCCTCTGGCATGAAACA
AATTCTTGGTCATTTTTTTCTTATATCACCGGTGTTCTGCATCTTCAAAC
TCCAACCTTATTAGGGCAGCATAAGGTGTTGACAAGACTTCCTACCTTTA
AAACTTAATAATTTGAAAGCTGACTTTGAAATAGAAGAATTTGTTGAGAA
ATGACTTCTTTCTTTCACCTATTCCAATTTTTGTGACAAGCTAGCATGTT
ATAATTTTGATACAGCATAAGCATTTTTGTGCTATTTATTTATTTACAGA
TAAAGTACGTGTCAAACTGCAGCTTTGGGATACAGCTGGACAAGAACGTT
TCCGGTCTATAACCCGGTCATATTATCGGAATTGTGCTGGTTGTCTAGTT
GTATATGATATCACAAATCGAGAATCGTTCGATCACGTGAAAGAATGGCT
GGAAGAAGCACGTTATGCTACGGAGGACCAAGATATAGTATATTGTTTAA
TCGGACATAAAGTTGACTTAGACTATCGTAGGGAAGTCTCCACTTCAGAN
GTAGCTATGGAAATCACTCGATAACGACACAAGTGAATGTCCATACTTTT
TTGACGTCATAATCTTATTAGAGAATATCTATAGAATTACTTCGTTAAAA
AGCTCTTTAAACCTAATTAAATTAGCGCTGATATGATTGACGAACGGCTC
GTGCCATGGCTCAAGGCTTTACAACTTTGTCGAAAATACTTAAATGCCAG
GATTAAACCTTGATAAAGCTTGGTATAATAACACAACACCATTTTAATAA
CATGAAAACTCGCAACATGATGTTTACTTTTTATCTTTATTCGTTGAAAA
TTTTGTTTGTCTTAACTAACAATATGTCAAACCATTGAAAGTATAAACCT
TACGGAGCCATATCACGTCATGAACATACATAGAATGTATGTATGGGGTC
CATTTTTCTATTTCATTTACCTTTGATACAGCATAAACATTTTTGTGCTA
TTTATTTATTTACAGATAAAGTGCGTGTCAAACTGCAGCTTTGGGATACA
GCTGGACAAGAACGTTTCCGGTCTATAACCCGGTCATATTATCGGAATTG
TGCTGGTTGTCTAGTTGTATATGATATCACAAATCGAGAATCGTTCGATC
ACGTGAAAGAATGGCTGGAAGAAGCACGTTATGCTACGGAGGACCAAGAT
ATAGTATATTGTTTAATCGGACATAAAGTTGACTTAGACTATCGTAGGGA
AGTCTCCACTTCAGAAGGAGAGGCTTTTGCGAATGCACATGGTATGACTT
TTATAGAAACTTCTGCTAAGATATTATGTAACGTTGAAGAGTCGTTTATA
AGTGTTGCACGTGAGATATACTCTAGACTTGAACTTGGACAAATAGCTCA
AAAAGATGGATGGGACGGTGTAAAAACGGTACCTTTTCGCCCTGGTAATG
TTTATTTATCACAAGAAACCCTTAATGAAACAAATCAGAACGATAAGAAA
TGTTGCCGGTGAACCTATTACTACTTATGATTTTTTAGGTATTCGTCTGA
TTTTAAAGATTAGAGATCGCAAAGATATTATATTGTTCGACGTTTAATCA
TCAAGCTCTGCAGAGCTCTGTCTTCATTTTATTTTTGCTATAAAACGACG
AAGTTTCTCTGGAGTAGATAAATGGAAGAGTGTTCGAAATAAAAATCGGA
CAAAAAGGAGTAAGATCACAGAATAACTTAAATAAAACACTAGATGGAGC
TACTCTGTATTTCCCAAGCAGCGGCAGTTGAAACAAAATAATGTGCCATC
TATGTTGAGTACTTTTGGTACCGGNAGCGGCAGTCGAAGCAAAATAATCT
GCCATCTTTGCTGAGTACTTTTGGTACCGCCAATTTGTTCAACCAAACAA
AAATACCTGCATGACGCGAAGCGACGGGGCGAGAGAATACACAGGTTGCA
AAATGAAAGTCTGAAGACAAATCACGCTTTTACTCGAAATTTTTATGGGC
GTATTGCATGACATTTTTTCTGATTGGTTCAAAAATTTCAGCCAAAAAAG
ATCCAAATTCATGTCTTCTGCATAAAATACGCGAGGGTGATCCAAGTAAC
ATGGTAAACATTTCGAGTAACCACATGTTTTGACTGCACTGATTAAATTG
TGCAACCCGTGTATTGACTTGATCATTCAAATTGCCGGCACCGAACTATG
GCCTACTTGTCAAAGATGGCGGAATATTTTACCTCAGTTAGGGATAAATA
AGATTCATGTAGTGTTATATATAAGATATTTTTGAGTTCGATCCATTCAA
AGTCTATGGAAAGTAATGAGATCCATTTTCGAATTTCAACACCTCTTTTC
CAATGCCTTCTTTTCCTTTTTTACGGTCAGCTCTCCCTAATTCGAATGGA
AATTCAATTTTTCTTCAATTCAGAAAACGTTTCGAATTATAGAAAGTATT
CACTTGACAGGAGCTTGAAATGGAGAAAGATTCACATAATTCTTTGGCTC
GAATCAGCGGAAATTTTTATTTCTTCCTTATTTTTTTTTTACATTTTACC
CTTATCTTTAGATAGAAATTTTCTAGATCTTGAGTTCCATTTTTATCTGA
TTTCTTACCCTTTTGTGCAACCAAAGAATGGTTTTATTCATCACGCCTAG
TGTCCAGAAACCTTGGTAACCGTGATTCCCTCAAATAAGATTTTTAGATC
TTTACTCTCGGGTACCTAATAGGGTTTGGAATAAGCCCCCACCTTCCGGG
TTGGAAAAATCTCAAAAATTAATAAAAAATTAATAAAATAAATAAAAATG
TCTTGGGTAGAAAAATAAATTAGCCCCCCCCCCTGCTATTAGGTACCCGA
GAGTAGATTTTTCAGGTTTTAGGTGTGGTTCTCTTTTCAAATTTGAACCT
AAAGCTAAAAAAACACGTACTTTTACTACAATAGTTATGGTTCTTTGTAG
CTAAAACAAAATTTTGTAAGGCTGCTGGCATCCACTAATCGATTCGTGCC
CCTTTTACCTTTTACTACATGTGGTTTTGCAGAGGTCTGCGATTCAGACT
AAAAATTTTGTTGAGATATTGGTTTGCTTTTGTGTTTTGTTTATTTTTTT
CGAAAGATTTTATGAGAATTTGTACATTGAATTATAATAGGTATTATATA
GAATTTCTATATGTATAATATTATCAATATTATTGTCAGTAAAAGTTGTT
TTTATCAGTGTATCCCAGTGTAAGAATGGGTACTGACCACATACACGTTT
TTTCTTTTATAACGTTTATAAGCATATACAGGCTCAGTTTTTGGTACACA
AACAATGGCTCTATTGTTTGAG Coding sequence (CDS) from alignment at scaffold_333:438663..443134- >TCONS_00060063 ID=TCONS_00060063|Name=TCONS_00060063|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at scaffold_333:438663..443134- (Clytia hemisphaerica)
ATAAAGTGCGTGTCAAACTGCAGCTTTGGGATACAGCTGGACAAGAACGT
TTCCGGTCTATAACCCGGTCATATTATCGGAATTGTGCTGGTTGTCTAGT
TGTATATGATATCACAAATCGAGAATCGTTCGATCACGTGAAAGAATGGC
TGGAAGAAGCACGTTATGCTACGGAGGACCAAGATATAGTATATTGTTTA
ATCGGACATAAAGTTGACTTAGACTATCGTAGGGAAGTCTCCACTTCAGA
AGGAGAGGCTTTTGCGAATGCACATGGTATGACTTTTATAGAAACTTCTG
CTAAGATATTATGTAACGTTGAAGAGTCGTTTATAAGTGTTGCACGTGAG
ATATACTCTAGACTTGAACTTGGACAAATAGCTCAAAAAGATGGATGGGA
CGGTGTAAAAACGGTACCTTTTCGCCCTGGTAATGTTTATTTATCACAAG
AAACCCTTAATGAAACAAATCAGAACGATAAGAAATGTTGCCGGTGAATG
GCAAAGAATTCATCCTCCTTGGAGCATCGGAATAAATTTGAACCGAATTA
TTTTTATCAATTTCGTTTGATATTGATTGGAGACAGTACTGTTGGGAAGT
CATCATTATTAAGACAATTTACTGAAGGACAATTTATACAAGCTTCAGAT
CCAACAGTTGGTGTTGATTTTCATGTGCGAATCATTGAATTGAACGATAA
AGTGCGTGTCAAACTGCAGCTTTGGGATACAGCTGGACAAGAACGTTTCC
GGTCTATAACCCGGTCATATTATCGGAATTGTGCTGGTTGTCTAGTTGTA
TATGATATCACAAATCGAGAATCGTTCGATCACGTGAAAGAATGGCTGGA
AGAAGCACGTTATGCTACGGAGGACCAAGATATAGTATATTGTTTAATCG
GACATAAAGTTGACTTAGACTATCGTAGGGAAGTCTCCACTTCAGAAGGA
GAGGCTTTTGCGAATGCACATGGTATGACTTTTATAGAAACTTCTGCTAA
GATATTATGTAACGTTGAAGAGTCGTTTATAAGTGTTGCACGTGAGATAT
ACTCTAGACTTGAACTTGGACAAATAGCTCAAAAAGATGGATGGGACGGT
GTAAAAACGGTACCTTTTCGCCCTGGTAATGTTTATTTATCACAAGAAAC
CCTTAATGAAACAAATCAGAACGATAAGAAATGTTGCCGGTGAATGGCAA
AGAATTCATCCTCCTTGGAGCATCGGAATAAATTTGAACCGAATTATTTT
TATCAATTTCGTTTGATATTGATTGGAGACAGTACTGTTGGGAAGTCATC
ATTATTAAGACAATTTACTGAAGGACAATTTATACAAGCTTCAGATCCAA
CAGTTGGTGTTGATTTTCATGTGCGAATCATTGAATTGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060063-exon-scaffold_333-1575043694:442744..443134 | TCONS_00060063-exon-scaffold_333-1575043694:442744..443134 | Clytia hemisphaerica | exon |
| TCONS_00060063-exon-scaffold_333-1575043694:438663..440969 | TCONS_00060063-exon-scaffold_333-1575043694:438663..440969 | Clytia hemisphaerica | exon |
| TCONS_00060063-exon-scaffold_333-1510915933:442744..443134 | TCONS_00060063-exon-scaffold_333-1510915933:442744..443134 | Clytia hemisphaerica | exon |
| TCONS_00060063-exon-scaffold_333-1510915933:438663..440969 | TCONS_00060063-exon-scaffold_333-1510915933:438663..440969 | Clytia hemisphaerica | exon |
| TCONS_00060063-exon-scaffold_333-1491911889:442744..443134 | TCONS_00060063-exon-scaffold_333-1491911889:442744..443134 | Clytia hemisphaerica | exon |
| TCONS_00060063-exon-scaffold_333-1491911889:438663..440969 | TCONS_00060063-exon-scaffold_333-1491911889:438663..440969 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_333 | supercontig | scaffold_333:438663..443134 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00060063 vs. Swiss-Prot (Human)
Match: RB39B (Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 9.045e-72 Identity = 114/216 (52.78%), Postives = 158/216 (73.15%), Query Frame = 1
Query: 232 FEPNYFYQFRLILIGDSTVGKSSLLRQFTEGQFIQASDPTVGVDFHVRIIELNDKVRVKLQLWDTAGQERFRSITRSYYRNCAGCLVVYDITNRESFDHVKEWLEEARYATEDQDIVYCLIGHKVDLDYRREVSTSEGEAFANAHGMTFIETSAKILCNVEESFISVAREIYSRLELGQIAQKDGWDGVKTVPFRPGNVYLSQETLNETNQNDKKC 879
E + YQFRLI+IGDSTVGKS L+R+FTEG+F Q SDPTVGVDF R++E+ R+KLQ+WDTAGQERFRSITR+YYRN G L+++DITNR SF +V EWLEE + + IV+ L+GHK DLD +R+V+ E E A A+GM +IETSA+ NVE++F + R+IY ++ G+I ++GW+GVK+ F P V+ S+E + +++++C
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKS-GFVPNVVHSSEEVV----KSERRC 211
The following BLAST results are available for this feature:
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