TCONS_00060071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060071
Unique NameTCONS_00060071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060071 ID=TCONS_00060071|Name=TCONS_00060071|organism=Clytia hemisphaerica|type=transcript|length=339bp
NNCAAAGATGGGAGGATACCAGTATCCAGAATCAAATGATCTGCTGATGA
AAAAATTAGATCAATGCAAGAAGTTGAATTATCAAGGAGATGAGTAGGCC
CACCAATTAATTGTTTCAGACCATGCTGGGTAGCTAGATTTTGAATTTCT
CTACCTCCAGGATTGGTGACATCACCGCTCCACCAGTCGGAATTCTTGAC
ATTGAAATCCCCAAGAAAGATTGTAGCAGTAggtgaaaaattttggatat
ttattATAGTCTCCTCCCATTTGCGAGAAAAAACATCGAATTCATCAGAA
GTCTGACTGGGGGAACGGTAACAGACGCAAAGAAAAAAN
Run BLAST on NCBI

protein sequence of TCONS_00060071-protein

>TCONS_00060071-protein ID=TCONS_00060071-protein|Name=TCONS_00060071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
FFLCVCYRSPSQTSDEFDVFSRKWEETIINIQNFSPTATIFLGDFNVKNS
DWWSGDVTNPGGREIQNLATQHGLKQLIGGPTHLLDNSTSCIDLIFSSAD
HLILDTGILPSL
Run BLAST on NCBI

transcript from alignment at scaffold_333:56059..56397

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060071 ID=TCONS_00060071|Name=TCONS_00060071|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at scaffold_333:56059..56397 (Clytia hemisphaerica)
NTTTTTTCTTTGCGTCTGTTACCGTTCCCCCAGTCAGACTTCTGATGAAT
TCGATGTTTTTTCTCGCAAATGGGAGGAGACTATaataaatatccaaaat
ttttcaccTACTGCTACAATCTTTCTTGGGGATTTCAATGTCAAGAATTC
CGACTGGTGGAGCGGTGATGTCACCAATCCTGGAGGTAGAGAAATTCAAA
ATCTAGCTACCCAGCATGGTCTGAAACAATTAATTGGTGGGCCTACTCAT
CTCCTTGATAATTCAACTTCTTGCATTGATCTAATTTTTTCATCAGCAGA
TCATTTGATTCTGGATACTGGTATCCTCCCATCTTTGNN

Coding sequence (CDS) from alignment at scaffold_333:56059..56397

>TCONS_00060071 ID=TCONS_00060071|Name=TCONS_00060071|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_333:56059..56397 (Clytia hemisphaerica)
TTTTTTCTTTGCGTCTGTTACCGTTCCCCCAGTCAGACTTCTGATGAATT
CGATGTTTTTTCTCGCAAATGGGAGGAGACTATaataaatatccaaaatt
tttcaccTACTGCTACAATCTTTCTTGGGGATTTCAATGTCAAGAATTCC
GACTGGTGGAGCGGTGATGTCACCAATCCTGGAGGTAGAGAAATTCAAAA
TCTAGCTACCCAGCATGGTCTGAAACAATTAATTGGTGGGCCTACTCATC
TCCTTGATAATTCAACTTCTTGCATTGATCTAATTTTTTCATCAGCAGAT
CATTTGATTCTGGATACTGGTATCCTCCCATCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037786XLOC_037786Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060071-proteinTCONS_00060071-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060071-exon-scaffold_333-1491911889:56059..56397TCONS_00060071-exon-scaffold_333-1491911889:56059..56397Clytia hemisphaericaexon
TCONS_00060071-exon-scaffold_333-1510915933:56059..56397TCONS_00060071-exon-scaffold_333-1510915933:56059..56397Clytia hemisphaericaexon
TCONS_00060071-exon-scaffold_333-1575043694:56059..56397TCONS_00060071-exon-scaffold_333-1575043694:56059..56397Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:56059..56397 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.81871	0.266124	1.23598	2.00976	0.736051	1.45409	2.10516	2.2993	3.8816	2.83621	2.76488	2.18103	1.6335	3.01582	2.63438	1.29915	2.42042	1.42917	3.19113	3.03571	1.54005	0.772206	0.312906	0.85343	2.86674	0.522999	0.892499	1.06688	0.739765	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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