Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060104 ID=TCONS_00060104|Name=TCONS_00060104|organism=Clytia hemisphaerica|type=transcript|length=355bp GTTATTGGCAATATACTGGTACAATGAATTATCTTGTGACTGTGGTTGAT GGTTTTATAACtggaaagattttttaatttttctgacAATAAAGTACAAA GGAGGCGTCGTCTTGCGGGCACAAAATTGGAAGATGCATCGaaaaagctt ACAAAGAGTTTCTGATGCAGGTCAATGAGCACCAACAAAATGATACTTCC GATGCAGCCCTCGGCTTCTGGGTGCGAAACTTTGGTTTACAGCCCCCAAG AAAAAGAAGCCACAATCAAGGAAAACTTACTAGGAGATGattataaaata aatatatgaTAAAATCGTgactaaatttctttttgtctcAAGCTCAAAAC TTTAA Run BLAST on NCBI transcript from alignment at scaffold_334:327840..333033+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060104 ID=TCONS_00060104|Name=TCONS_00060104|organism=Clytia hemisphaerica|type=transcript|length=5194bp|location=Sequence derived from alignment at scaffold_334:327840..333033+ (Clytia hemisphaerica) GTTATTGGCAATATACTGGTACAATGAATTATCTTGTGACTGTGGTTGAT
GGTTTTATAACtggaaagattttttaatttttctgacAATAAAGTAAGTT
TTTTTCATTATAAGTCTACTCTTGCTAAGTAGAATTGTGATCACTTAGAC
TTGAAGACaaatgaacaatttttttttaggttAGATCAGGATTCCTTGAC
TTGCTAATCCAGTAAACAGACTAAAGTAGCAGCCATAATATTATaacctt
tttatttaaattttctttcttcagaCAGACTTAGAGGAGACCAACGAAGA
TGATTGGAGAACTTGAATAGTTCTAAataatttttgacatttcagCACTT
AAGTAACAGATTGaaactttggaaaaaattttgaattgctTAGCTTATTG
TAAAAATATACAGCTTAAAGTTTTGATTTCGTATGTACAGCatctgaccc
cgagaatgtagtaaaccccgagaatgtaggtttctcatttttaagcattg
tagccttaacgatagttcaacttcatgaaaagttgtttcagggcatactg
ttacatattacttattatttctagacataaaattttaacttgaattaacT
TTTTCCAACGGAAACCTGAATCGAAAttgattggatactacccgaattgg
gacatttttaaaatcttctctaaatcgaaatctattggaattaagttatg
atgatagggtattttcttattcctaatgaactaaggaaacGGGGGGAAAT
AGTCCATTTccatatttattgttctaagttagatattttgacgaaaatgt
ttaacctaccttttggggttagttgacctacaatttgggggGAGGGGGCC
TTCATAACctgacataaaaagtctgtcaaattatataaaacttgtttgtt
gtactttcatcACATGAATCTGNtcataacccgacataaaaagtctgtca
aattatataaaacttgtttgttgAAGTACAACATGACATGAATCATAAGC
CTTATCCACTAAATCTAAAGATAGTACGTATTTCATATaaacatggaatt
attatagacactggaaaaacaacgggctgattttttccaatttctcatgt
acaagccttgtccgctTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcattaaatgatttttcgtagc
attttaattgtatttctcatcaaaatacacttatccaattcccaaatgag
actttaagttctccttcgagattcaaactcatctagGTAATTACTTATTA
AACGTCGTTAAGACGTTTTCAAtttcgagaaagatgcaaaaacatgctat
gtaccttaagagaactaaattttgcggtttttgctgatttaggcccaaac
cgtaaaataaaattcccgcaaaatttttcaaatgcgaaaaacaaaggtcg
aataattcacagtacggctctaattttctttcaagtgagaaatccgcaaa
attaagttcccgcaaatattaaatcttaaactgcgaaccgcaaaaaattg
ttcccttaaggtactttaatcgtagaaattttagcgagactaattttagc
gtatattagcgagtcgtgaaaatcttgatttttttttaatttattttagc
gaatcaagatttcaaaaaatttcgcgcggataaattttagcgaatactcg
tattacattattgactgagttcgttttctagcatttctttgcactgaaac
ccttcctgttgataaaaatatatcaaggcaatataaccagaaatttcgcg
tggataaattttagagatctgtcgattcggcatgttttagcgagatttat
tttaacgaaaatagggaaaactcgctcaaacgctaaaattagtctcgcta
aaattttaaattaaagtACAAGAAATTGtatattgacaccagaaattttt
aaacttcaacctcaaaacgAACGATCATCAAACGAACACTTAACTTAAAG
GTAGAAATTTCTGCGACTTTGGCCATAATTCGCGAAATCTTCTTAGGCAA
AATTAATATCGAGCAggcaattcgcgaaaattaattgatttcattcaatt
tttcagtcGTCAGAGATAGAAAGTGCTTACAATGATCTGTAGTCAAAGTG
TTTCGATCTTTTTTATTGCAAAGCGCATATTTGAAATGgttgatttttat
ttaatttgtggtaatttcttccgcgaaacgCGCAATTTTGGAGAGCTTAA
TTTGCGAAAATTTCTTGTCCGTAGTAAtatcttcccttaaggtaatcttT
TTTGTGGGTCATCCGGTATGTCATTGTCTGTTGTCAATGATTACAGTCCC
AACACTTGTAGTTATTATTTGAGATTATGTCGCTACTTGGAAATTACGTA
cataaaatttatttcaaactttctaaTTAGGTACAAAGGAGGCGTCGTCT
TGCGGGCACAAAATTGGAAGATGCATCGGTGAGtcgtaaccccccccccc
cgatttttcgtttttattgcagtaactgaaaaaaatcacatgGGGTTCTA
GCAAAGCCCAGCAAGACTTTCTTGAAtgtaaaaatattaaagaaCTTTTG
TTCATGTCACGCCTGATTAGAATCTTTTCAACTCAGGAATACTTTAATAG
GATAAGGGAGCTTCGCGAAAGTTTcactttttcgcgaaagtttatctcgA
AATTCTGCaacttttccatttttccaattcctaatttctcgacctctgAA
GCTATTGAGCtagcctggttaaccaagccagtttttacaagGCCACGATA
CGGCTAAAGGCAATTATGTATAGCGTTATCGGTGCTGTAACtatttttat
gatgtacggaattttaagtttgccttgaaaaactGGCTAGAGCGAATCGT
ACGTTTATAAAATGAACGGAGAAGTCGGCGAGACTTCTTTGAAAACGCTT
TTCACTTCTCAacgaaaaactttttgaaggtATTTTTGTATCTGGGACCT
CATGCCACTAAatgttttccctttttttagaaaaagcttACAAAGAGTTT
CTGATGCAGGTCAATGAGCACCAACAAAATGATACTTCCGATGCAGCCCT
CGGCTTCTGGGTGCGAAACTTTGGTTTACAGCCCCCAAGAAAAAGAAGCC
ACAATCAAGGAAAACTTACTAGGAGATGattataaaataaatatatgaTA
AAATCGTgactaaatttctttttgtctcAAGCTCAAAACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00060104-exon-scaffold_334-1491911889:327840..327932 | TCONS_00060104-exon-scaffold_334-1491911889:327840..327932 | Clytia hemisphaerica | exon |
TCONS_00060104-exon-scaffold_334-1510915933:327840..327932 | TCONS_00060104-exon-scaffold_334-1510915933:327840..327932 | Clytia hemisphaerica | exon |
TCONS_00060104-exon-scaffold_334-1575043694:327840..327932 | TCONS_00060104-exon-scaffold_334-1575043694:327840..327932 | Clytia hemisphaerica | exon |
TCONS_00060104-exon-scaffold_334-1491911889:332220..332267 | TCONS_00060104-exon-scaffold_334-1491911889:332220..332267 | Clytia hemisphaerica | exon |
TCONS_00060104-exon-scaffold_334-1510915933:332220..332267 | TCONS_00060104-exon-scaffold_334-1510915933:332220..332267 | Clytia hemisphaerica | exon |
TCONS_00060104-exon-scaffold_334-1575043694:332220..332267 | TCONS_00060104-exon-scaffold_334-1575043694:332220..332267 | Clytia hemisphaerica | exon |
TCONS_00060104-exon-scaffold_334-1491911889:332820..333033 | TCONS_00060104-exon-scaffold_334-1491911889:332820..333033 | Clytia hemisphaerica | exon |
TCONS_00060104-exon-scaffold_334-1510915933:332820..333033 | TCONS_00060104-exon-scaffold_334-1510915933:332820..333033 | Clytia hemisphaerica | exon |
TCONS_00060104-exon-scaffold_334-1575043694:332820..333033 | TCONS_00060104-exon-scaffold_334-1575043694:332820..333033 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_334 | supercontig | scaffold_334:327840..333033 + |
Blast
The following BLAST results are available for this feature:
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