TCONS_00060104 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060104
Unique NameTCONS_00060104
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060104 ID=TCONS_00060104|Name=TCONS_00060104|organism=Clytia hemisphaerica|type=transcript|length=355bp
GTTATTGGCAATATACTGGTACAATGAATTATCTTGTGACTGTGGTTGAT
GGTTTTATAACtggaaagattttttaatttttctgacAATAAAGTACAAA
GGAGGCGTCGTCTTGCGGGCACAAAATTGGAAGATGCATCGaaaaagctt
ACAAAGAGTTTCTGATGCAGGTCAATGAGCACCAACAAAATGATACTTCC
GATGCAGCCCTCGGCTTCTGGGTGCGAAACTTTGGTTTACAGCCCCCAAG
AAAAAGAAGCCACAATCAAGGAAAACTTACTAGGAGATGattataaaata
aatatatgaTAAAATCGTgactaaatttctttttgtctcAAGCTCAAAAC
TTTAA
Run BLAST on NCBI

transcript from alignment at scaffold_334:327840..333033+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060104 ID=TCONS_00060104|Name=TCONS_00060104|organism=Clytia hemisphaerica|type=transcript|length=5194bp|location=Sequence derived from alignment at scaffold_334:327840..333033+ (Clytia hemisphaerica)
GTTATTGGCAATATACTGGTACAATGAATTATCTTGTGACTGTGGTTGAT GGTTTTATAACtggaaagattttttaatttttctgacAATAAAGTAAGTT TTTTTCATTATAAGTCTACTCTTGCTAAGTAGAATTGTGATCACTTAGAC TTGAAGACaaatgaacaatttttttttaggttAGATCAGGATTCCTTGAC TTGCTAATCCAGTAAACAGACTAAAGTAGCAGCCATAATATTATaacctt tttatttaaattttctttcttcagaCAGACTTAGAGGAGACCAACGAAGA TGATTGGAGAACTTGAATAGTTCTAAataatttttgacatttcagCACTT AAGTAACAGATTGaaactttggaaaaaattttgaattgctTAGCTTATTG TAAAAATATACAGCTTAAAGTTTTGATTTCGTATGTACAGCatctgaccc cgagaatgtagtaaaccccgagaatgtaggtttctcatttttaagcattg tagccttaacgatagttcaacttcatgaaaagttgtttcagggcatactg ttacatattacttattatttctagacataaaattttaacttgaattaacT TTTTCCAACGGAAACCTGAATCGAAAttgattggatactacccgaattgg gacatttttaaaatcttctctaaatcgaaatctattggaattaagttatg atgatagggtattttcttattcctaatgaactaaggaaacGGGGGGAAAT AGTCCATTTccatatttattgttctaagttagatattttgacgaaaatgt ttaacctaccttttggggttagttgacctacaatttgggggGAGGGGGCC TTCATAACctgacataaaaagtctgtcaaattatataaaacttgtttgtt gtactttcatcACATGAATCTGNtcataacccgacataaaaagtctgtca aattatataaaacttgtttgttgAAGTACAACATGACATGAATCATAAGC CTTATCCACTAAATCTAAAGATAGTACGTATTTCATATaaacatggaatt attatagacactggaaaaacaacgggctgattttttccaatttctcatgt acaagccttgtccgctTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcattaaatgatttttcgtagc attttaattgtatttctcatcaaaatacacttatccaattcccaaatgag actttaagttctccttcgagattcaaactcatctagGTAATTACTTATTA AACGTCGTTAAGACGTTTTCAAtttcgagaaagatgcaaaaacatgctat gtaccttaagagaactaaattttgcggtttttgctgatttaggcccaaac cgtaaaataaaattcccgcaaaatttttcaaatgcgaaaaacaaaggtcg aataattcacagtacggctctaattttctttcaagtgagaaatccgcaaa attaagttcccgcaaatattaaatcttaaactgcgaaccgcaaaaaattg ttcccttaaggtactttaatcgtagaaattttagcgagactaattttagc gtatattagcgagtcgtgaaaatcttgatttttttttaatttattttagc gaatcaagatttcaaaaaatttcgcgcggataaattttagcgaatactcg tattacattattgactgagttcgttttctagcatttctttgcactgaaac ccttcctgttgataaaaatatatcaaggcaatataaccagaaatttcgcg tggataaattttagagatctgtcgattcggcatgttttagcgagatttat tttaacgaaaatagggaaaactcgctcaaacgctaaaattagtctcgcta aaattttaaattaaagtACAAGAAATTGtatattgacaccagaaattttt aaacttcaacctcaaaacgAACGATCATCAAACGAACACTTAACTTAAAG GTAGAAATTTCTGCGACTTTGGCCATAATTCGCGAAATCTTCTTAGGCAA AATTAATATCGAGCAggcaattcgcgaaaattaattgatttcattcaatt tttcagtcGTCAGAGATAGAAAGTGCTTACAATGATCTGTAGTCAAAGTG TTTCGATCTTTTTTATTGCAAAGCGCATATTTGAAATGgttgatttttat ttaatttgtggtaatttcttccgcgaaacgCGCAATTTTGGAGAGCTTAA TTTGCGAAAATTTCTTGTCCGTAGTAAtatcttcccttaaggtaatcttT TTTGTGGGTCATCCGGTATGTCATTGTCTGTTGTCAATGATTACAGTCCC AACACTTGTAGTTATTATTTGAGATTATGTCGCTACTTGGAAATTACGTA cataaaatttatttcaaactttctaaTTAGGTACAAAGGAGGCGTCGTCT TGCGGGCACAAAATTGGAAGATGCATCGGTGAGtcgtaaccccccccccc cgatttttcgtttttattgcagtaactgaaaaaaatcacatgGGGTTCTA GCAAAGCCCAGCAAGACTTTCTTGAAtgtaaaaatattaaagaaCTTTTG TTCATGTCACGCCTGATTAGAATCTTTTCAACTCAGGAATACTTTAATAG GATAAGGGAGCTTCGCGAAAGTTTcactttttcgcgaaagtttatctcgA AATTCTGCaacttttccatttttccaattcctaatttctcgacctctgAA GCTATTGAGCtagcctggttaaccaagccagtttttacaagGCCACGATA CGGCTAAAGGCAATTATGTATAGCGTTATCGGTGCTGTAACtatttttat gatgtacggaattttaagtttgccttgaaaaactGGCTAGAGCGAATCGT ACGTTTATAAAATGAACGGAGAAGTCGGCGAGACTTCTTTGAAAACGCTT TTCACTTCTCAacgaaaaactttttgaaggtATTTTTGTATCTGGGACCT CATGCCACTAAatgttttccctttttttagaaaaagcttACAAAGAGTTT CTGATGCAGGTCAATGAGCACCAACAAAATGATACTTCCGATGCAGCCCT CGGCTTCTGGGTGCGAAACTTTGGTTTACAGCCCCCAAGAAAAAGAAGCC ACAATCAAGGAAAACTTACTAGGAGATGattataaaataaatatatgaTA AAATCGTgactaaatttctttttgtctcAAGCTCAAAACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037816XLOC_037816Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060104-exon-scaffold_334-1491911889:327840..327932TCONS_00060104-exon-scaffold_334-1491911889:327840..327932Clytia hemisphaericaexon
TCONS_00060104-exon-scaffold_334-1510915933:327840..327932TCONS_00060104-exon-scaffold_334-1510915933:327840..327932Clytia hemisphaericaexon
TCONS_00060104-exon-scaffold_334-1575043694:327840..327932TCONS_00060104-exon-scaffold_334-1575043694:327840..327932Clytia hemisphaericaexon
TCONS_00060104-exon-scaffold_334-1491911889:332220..332267TCONS_00060104-exon-scaffold_334-1491911889:332220..332267Clytia hemisphaericaexon
TCONS_00060104-exon-scaffold_334-1510915933:332220..332267TCONS_00060104-exon-scaffold_334-1510915933:332220..332267Clytia hemisphaericaexon
TCONS_00060104-exon-scaffold_334-1575043694:332220..332267TCONS_00060104-exon-scaffold_334-1575043694:332220..332267Clytia hemisphaericaexon
TCONS_00060104-exon-scaffold_334-1491911889:332820..333033TCONS_00060104-exon-scaffold_334-1491911889:332820..333033Clytia hemisphaericaexon
TCONS_00060104-exon-scaffold_334-1510915933:332820..333033TCONS_00060104-exon-scaffold_334-1510915933:332820..333033Clytia hemisphaericaexon
TCONS_00060104-exon-scaffold_334-1575043694:332820..333033TCONS_00060104-exon-scaffold_334-1575043694:332820..333033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:327840..333033 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (97.8078 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89651 2.48444 0.275135 0 44.165 49.3058 71.3533 78.6734 97.8078 68.4596 70.6223 55.821 56.4973 73.1444 63.8296 48.1872 89.5757 67.1913 74.6447 67.1883 51.0895 44.3527 24.9894 24.5536 42.4109 47.7922 37.0527 33.3148 34.9997 18.7786
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350Sequence
Match NameE-valueIdentityDescription
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