TCONS_00060111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060111
Unique NameTCONS_00060111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1031

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060111 ID=TCONS_00060111|Name=TCONS_00060111|organism=Clytia hemisphaerica|type=transcript|length=1031bp
AAAAAAGTCAATTATGAGTGGTATTACCTACTCGTTGATTGACTGCCAAG
ATCATTTTTTGTTTAGTAAtaattattatatattttgtgtttgaaagatt
tattgaaaaattagGTAACTATGAGTGAAGGAAAACAGAGTCAATTTCGC
CGCGAAGAAGAGGAGATTGCCAAAGGTGCCAGAGCCATGGAGGATCCTGA
AAGATGTTCAATTTGTTTACAACCAAAAGCTCCGAATTCTCCATCCAACA
AGTGTGATCAATGTTTGGATAAAATGAACAAAGTTCCAACAGGATTCGCA
TTCAAAGCGGTGGAAGGCCAGGGAGATAAAGAATTTGAATGTCCCATTTG
TTTGTGTTTAATCAAGGGAGCAACTGAGCTTACTTGTGAACATTTGATGT
GTGGGGAATGTTTGCTTCACTATGAGAAAGGACAAACTGAGAAAGCAGAA
AAagaAGTGGCGAAGAAAAATCCCAAATTTCTTTGCAGTGTATGCATGAC
ACCTTACAAAGTTCAAGATaaaaagtcgGTAAAGTCCACTGATCgtttta
tacaaaataaaatcagGGTTCATTGCATGCAAAAGGATTGTCCGTGGATT
GGTTCCATCAAGGATTATGAGgtccACGTTAAGAAATGTGACTATGGCAA
AATAAAATGCCCATATTTCGAGTTGGGTTGTCTCAATACGTTTGAGGAGC
AAAATTTACCAAAACACAACGCAATGAATCGACAAATCCACGAAGCTTTG
CTTTTGAATGTCGTAAATTTGTTGGCGAAAGAGAGACTCGAAAATCGAAC
ACTTCtcgaaaaccaaaacaaaacaatcgaaCGTTTCGAAGAAAGATTGG
GTAAAATTGAAGTAGAAAACAAGGACCTGGTGGACAAATACGAGACCCAA
TCCAATCTTCTCATAAAAAATACTAAGGAAATCGGGATCAGGTGCAGTTA
GCGTGGTCACTGGTTGGATTCTTTAGTAGTGGAGAGCACTGTTAAAGAAT
ATAACCTAATGTCGTTTAACCTAATAATGTT
Run BLAST on NCBI

protein sequence of TCONS_00060111-protein

>TCONS_00060111-protein ID=TCONS_00060111-protein|Name=TCONS_00060111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MSEGKQSQFRREEEEIAKGARAMEDPERCSICLQPKAPNSPSNKCDQCLD
KMNKVPTGFAFKAVEGQGDKEFECPICLCLIKGATELTCEHLMCGECLLH
YEKGQTEKAEKEVAKKNPKFLCSVCMTPYKVQDKKSVKSTDRFIQNKIRV
HCMQKDCPWIGSIKDYEVHVKKCDYGKIKCPYFELGCLNTFEEQNLPKHN
AMNRQIHEALLLNVVNLLAKERLENRTLLENQNKTIERFEERLGKIEVEN
KDLVDKYETQSNLLIKNTKEIGIRCS
Run BLAST on NCBI

transcript from alignment at scaffold_334:55043..57589-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060111 ID=TCONS_00060111|Name=TCONS_00060111|organism=Clytia hemisphaerica|type=transcript|length=2547bp|location=Sequence derived from alignment at scaffold_334:55043..57589- (Clytia hemisphaerica)
AAAAAAGTCAATTATGAGTGGTATTACCTACTCGTTGATTGACTGCCAAG
ATCATTTTTTGTTTAGTAATAATTATTATATATTTTGTGTTTGAAAGATT
TATTGAAAAATTAGGTAACTATGAGTGAAGGAAAACAGAGTCAATTTCGC
CGCGAAGAAGAGGAGATTGCCAAAGGTGCCAGAGCCATGGAGGATCCTGA
AAGATGTTCAATTTGTTTACAACCAAAAGCTCCGAATTCTCCATCCAACA
AGTGTGATCAATGTTTGGATAAAATGAACAAAGTTCCAACAGGATTCGCA
TTCAAAGCGGTGGAAGGCCAGGGAGATAAAGAATTTGAATGTCCCATTTG
TTTGTGTTTAATCAAGGGAGCAACTGAGCTTACTTGTGAACATTTGATGT
GTGGGGAATGTTTGCTTCACTATGAGAAAGGACAAACTGAGAAAGCAGAA
AAGTAAGTTCAAGAAATAAATTTTTTGATATTCGAATATTGTGCTTTTCC
AGAAAAAATTTGAGTATGGGTGGGGGGGTGGCTATAGGATAAAACATTTT
TAGGAAATTTACCCCGTAGAATTGTGACTTTTGACCCCCTGGACAAGCAT
TAGTTGACCCCCTGGACACTCAAAACTACCTTCAAACAGAGCAAAATTAC
CCTCAAACAGAACCATTTTACCTCCCGGACAAGGCAAATTTTGATGACTT
TTCACTACTCCCCGGAAAATATATCCTCAACCCCCAAGTATGAAAATTTT
CTGGAAGAGCCCATTCCAACATTAAAACATTTTTAAAAGGCAAACGCAGA
AGCTGAAAATGGTGATAACTTGAAAAAAATTAACTTGCGTTGATCTAGAA
GATAATAAGAATAGGTTTTAATTTATTTCAAGTTTTCATCCCTTAAAATA
AAGAGTACCATTTTCATTTTTGAAATTAATATGCTATATATGGGACAAAT
TTTTCTTTTCAGAGAAGTGGCGAAGAAAAATCCCAAATTTCTTTGCAGTG
TATGCATGACACCTTACAAAGTTCAAGATGTGAGTTATCTATTTTTCATT
CAATCCGATTCGAGCCGGGTATTCGAGTAGTACTTTTCATGCGTAAAATA
AGAATTTCAGCAATACTTTACATCAGTATTAAAGGTGATAAGGTAACATG
CAATGCTACCCACTAAACAAGTTCTTTATTTTCATTTTTTCAGAAAAAGT
CGGTAAAGTCCACTGATCGTTTTATACAAAATAAAATCAGGGTTCATTGC
ATGCAAAAGGATTGTCCGTGGATTGGTTCCATCAAGGATTATGAGGTAAA
GTCACAAACGCACTCTTTTTTTATTTTATAAGAACCATTTTGTAGAGGCT
CGGCTGTTCTTAAACTCAAAAAACTTTTCTCTTCCTTTTGTTAGGGCAAG
ATTCAGGGGTATTAGGTTTTCTATCTAATTTTGTTCTTCTTTGCCCCTTT
CCTTGCTAAAACTTCATTCCAGGTCATACCAGACTCGGCTTCCTTTTTAC
ACTGTTACAATTTTTTGACGCTTTTGTGTTGTGACGCTTTAGGGCTTATC
TTATTAAAATCGAACAAGCTTCCATTGGCTATGAAGTGAAAAGTATACCA
CCCCTTGACCCTGAATCTTCATCCCAACATTTTTTGTTTTGTAATACGAT
TACTAGGACAGTGAAAATCAGGTAAAAGACCCATGCTATGACACAAACGA
ATTAAGACTTATCTCCTTTTTTATTTTGTAGGTCCACGTTAAGAAATGTG
ACTATGGCAAAATAAAATGCCCATATTTCGAGTTGGGTTGTCTCAATACG
GTAAGTTTTCTTTCATCAATAAAAAGATAATTTTTTCAAATGGAGATGCT
CCGGAGAAAGATTTTATTCATACTCCATGTCTTCTGTATAACTTTAATAA
AGAAACTAGAAATTGTTTTTTATAAGGTAGCCTCCCTGCTAATTTAAACT
TCTGTTAATCGAACTAATTTTCCGTCATGGAGAAACCTTCGTCTTCGTAT
TATTGCTATCCATAATTCGGATCTCTTGACAAATTAGATCCTTTGTTCAT
GAATATTGCCCTTATGTATTACAATGAAGTGAAAACAGCCGCTCTCATGT
TGTCTTCTAGGTCAACTGTATAAAGAACACAGTTTTTGAATAAGTTGTTT
TCACTTCTCCAGTTTCTATCATGTTTGTCAGCTCTTATGAACCCGTTTGT
CTTTAGTTTGAGGAGCAAAATTTACCAAAACACAACGCAATGAATCGACA
AATCCACGAAGCTTTGCTTTTGAATGTCGTAAATTTGTTGGCGAAAGAGA
GACTCGAAAATCGAACACTTCTCGAAAACCAAAACAAAACAATCGAACGT
TTCGAAGAAAGATTGGGTAAAATTGAAGTAGAAAACAAGGACCTGGTGGA
CAAATACGAGACCCAATCCAATCTTCTCATAAAAAATACTAAGGAAATCG
GGATCAGGTGCAGTTAGCGTGGTCACTGGTTGGATTCTTTAGTAGTGGAG
AGCACTGTTAAAGAATATAACCTAATGTCGTTTAACCTAATAATGTT

Coding sequence (CDS) from alignment at scaffold_334:55043..57589-

>TCONS_00060111 ID=TCONS_00060111|Name=TCONS_00060111|organism=Clytia hemisphaerica|type=CDS|length=4155bp|location=Sequence derived from alignment at scaffold_334:55043..57589- (Clytia hemisphaerica)
TTTGAGGAGCAAAATTTACCAAAACACAACGCAATGAATCGACAAATCCA
CGAAGCTTTGCTTTTGAATGTCGTAAATTTGTTGGCGAAAGAGAGACTCG
AAAATCGAACACTTCTCGAAAACCAAAACAAAACAATCGAACGTTTCGAA
GAAAGATTGGGTAAAATTGAAGTAGAAAACAAGGACCTGGTGGACAAATA
CGAGACCCAATCCAATCTTCTCATAAAAAATACTAAGGAAATCGGGATCA
GGTGCAGTTAGGTCCACGTTAAGAAATGTGACTATGGCAAAATAAAATGC
CCATATTTCGAGTTGGGTTGTCTCAATACGAAAAAGTCGGTAAAGTCCAC
TGATCGTTTTATACAAAATAAAATCAGGGTTCATTGCATGCAAAAGGATT
GTCCGTGGATTGGTTCCATCAAGGATTATGAGAGAAGTGGCGAAGAAAAA
TCCCAAATTTCTTTGCAGTGTATGCATGACACCTTACAAAGTTCAAGATA
TGAGTGAAGGAAAACAGAGTCAATTTCGCCGCGAAGAAGAGGAGATTGCC
AAAGGTGCCAGAGCCATGGAGGATCCTGAAAGATGTTCAATTTGTTTACA
ACCAAAAGCTCCGAATTCTCCATCCAACAAGTGTGATCAATGTTTGGATA
AAATGAACAAAGTTCCAACAGGATTCGCATTCAAAGCGGTGGAAGGCCAG
GGAGATAAAGAATTTGAATGTCCCATTTGTTTGTGTTTAATCAAGGGAGC
AACTGAGCTTACTTGTGAACATTTGATGTGTGGGGAATGTTTGCTTCACT
ATGAGAAAGGACAAACTGAGAAAGCAGAAAATTTGAGGAGCAAAATTTAC
CAAAACACAACGCAATGAATCGACAAATCCACGAAGCTTTGCTTTTGAAT
GTCGTAAATTTGTTGGCGAAAGAGAGACTCGAAAATCGAACACTTCTCGA
AAACCAAAACAAAACAATCGAACGTTTCGAAGAAAGATTGGGTAAAATTG
AAGTAGAAAACAAGGACCTGGTGGACAAATACGAGACCCAATCCAATCTT
CTCATAAAAAATACTAAGGAAATCGGGATCAGGTGCAGTTAGGTCCACGT
TAAGAAATGTGACTATGGCAAAATAAAATGCCCATATTTCGAGTTGGGTT
GTCTCAATACGAAAAAGTCGGTAAAGTCCACTGATCGTTTTATACAAAAT
AAAATCAGGGTTCATTGCATGCAAAAGGATTGTCCGTGGATTGGTTCCAT
CAAGGATTATGAGAGAAGTGGCGAAGAAAAATCCCAAATTTCTTTGCAGT
GTATGCATGACACCTTACAAAGTTCAAGATATGAGTGAAGGAAAACAGAG
TCAATTTCGCCGCGAAGAAGAGGAGATTGCCAAAGGTGCCAGAGCCATGG
AGGATCCTGAAAGATGTTCAATTTGTTTACAACCAAAAGCTCCGAATTCT
CCATCCAACAAGTGTGATCAATGTTTGGATAAAATGAACAAAGTTCCAAC
AGGATTCGCATTCAAAGCGGTGGAAGGCCAGGGAGATAAAGAATTTGAAT
GTCCCATTTGTTTGTGTTTAATCAAGGGAGCAACTGAGCTTACTTGTGAA
CATTTGATGTGTGGGGAATGTTTGCTTCACTATGAGAAAGGACAAACTGA
GAAAGCAGAAAATTTGAGGAGCAAAATTTACCAAAACACAACGCAATGAA
TCGACAAATCCACGAAGCTTTGCTTTTGAATGTCGTAAATTTGTTGGCGA
AAGAGAGACTCGAAAATCGAACACTTCTCGAAAACCAAAACAAAACAATC
GAACGTTTCGAAGAAAGATTGGGTAAAATTGAAGTAGAAAACAAGGACCT
GGTGGACAAATACGAGACCCAATCCAATCTTCTCATAAAAAATACTAAGG
AAATCGGGATCAGGTGCAGTTAGGTCCACGTTAAGAAATGTGACTATGGC
AAAATAAAATGCCCATATTTCGAGTTGGGTTGTCTCAATACGAAAAAGTC
GGTAAAGTCCACTGATCGTTTTATACAAAATAAAATCAGGGTTCATTGCA
TGCAAAAGGATTGTCCGTGGATTGGTTCCATCAAGGATTATGAGAGAAGT
GGCGAAGAAAAATCCCAAATTTCTTTGCAGTGTATGCATGACACCTTACA
AAGTTCAAGATATGAGTGAAGGAAAACAGAGTCAATTTCGCCGCGAAGAA
GAGGAGATTGCCAAAGGTGCCAGAGCCATGGAGGATCCTGAAAGATGTTC
AATTTGTTTACAACCAAAAGCTCCGAATTCTCCATCCAACAAGTGTGATC
AATGTTTGGATAAAATGAACAAAGTTCCAACAGGATTCGCATTCAAAGCG
GTGGAAGGCCAGGGAGATAAAGAATTTGAATGTCCCATTTGTTTGTGTTT
AATCAAGGGAGCAACTGAGCTTACTTGTGAACATTTGATGTGTGGGGAAT
GTTTGCTTCACTATGAGAAAGGACAAACTGAGAAAGCAGAAAATTTGAGG
AGCAAAATTTACCAAAACACAACGCAATGAATCGACAAATCCACGAAGCT
TTGCTTTTGAATGTCGTAAATTTGTTGGCGAAAGAGAGACTCGAAAATCG
AACACTTCTCGAAAACCAAAACAAAACAATCGAACGTTTCGAAGAAAGAT
TGGGTAAAATTGAAGTAGAAAACAAGGACCTGGTGGACAAATACGAGACC
CAATCCAATCTTCTCATAAAAAATACTAAGGAAATCGGGATCAGGTGCAG
TTAGGTCCACGTTAAGAAATGTGACTATGGCAAAATAAAATGCCCATATT
TCGAGTTGGGTTGTCTCAATACGAAAAAGTCGGTAAAGTCCACTGATCGT
TTTATACAAAATAAAATCAGGGTTCATTGCATGCAAAAGGATTGTCCGTG
GATTGGTTCCATCAAGGATTATGAGAGAAGTGGCGAAGAAAAATCCCAAA
TTTCTTTGCAGTGTATGCATGACACCTTACAAAGTTCAAGATATGAGTGA
AGGAAAACAGAGTCAATTTCGCCGCGAAGAAGAGGAGATTGCCAAAGGTG
CCAGAGCCATGGAGGATCCTGAAAGATGTTCAATTTGTTTACAACCAAAA
GCTCCGAATTCTCCATCCAACAAGTGTGATCAATGTTTGGATAAAATGAA
CAAAGTTCCAACAGGATTCGCATTCAAAGCGGTGGAAGGCCAGGGAGATA
AAGAATTTGAATGTCCCATTTGTTTGTGTTTAATCAAGGGAGCAACTGAG
CTTACTTGTGAACATTTGATGTGTGGGGAATGTTTGCTTCACTATGAGAA
AGGACAAACTGAGAAAGCAGAAAATTTGAGGAGCAAAATTTACCAAAACA
CAACGCAATGAATCGACAAATCCACGAAGCTTTGCTTTTGAATGTCGTAA
ATTTGTTGGCGAAAGAGAGACTCGAAAATCGAACACTTCTCGAAAACCAA
AACAAAACAATCGAACGTTTCGAAGAAAGATTGGGTAAAATTGAAGTAGA
AAACAAGGACCTGGTGGACAAATACGAGACCCAATCCAATCTTCTCATAA
AAAATACTAAGGAAATCGGGATCAGGTGCAGTTAGGTCCACGTTAAGAAA
TGTGACTATGGCAAAATAAAATGCCCATATTTCGAGTTGGGTTGTCTCAA
TACGAAAAAGTCGGTAAAGTCCACTGATCGTTTTATACAAAATAAAATCA
GGGTTCATTGCATGCAAAAGGATTGTCCGTGGATTGGTTCCATCAAGGAT
TATGAGAGAAGTGGCGAAGAAAAATCCCAAATTTCTTTGCAGTGTATGCA
TGACACCTTACAAAGTTCAAGATATGAGTGAAGGAAAACAGAGTCAATTT
CGCCGCGAAGAAGAGGAGATTGCCAAAGGTGCCAGAGCCATGGAGGATCC
TGAAAGATGTTCAATTTGTTTACAACCAAAAGCTCCGAATTCTCCATCCA
ACAAGTGTGATCAATGTTTGGATAAAATGAACAAAGTTCCAACAGGATTC
GCATTCAAAGCGGTGGAAGGCCAGGGAGATAAAGAATTTGAATGTCCCAT
TTGTTTGTGTTTAATCAAGGGAGCAACTGAGCTTACTTGTGAACATTTGA
TGTGTGGGGAATGTTTGCTTCACTATGAGAAAGGACAAACTGAGAAAGCA
GAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037820XLOC_037820Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060111-exon-scaffold_334-1575043694:57138..57589TCONS_00060111-exon-scaffold_334-1575043694:57138..57589Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1575043694:56561..56627TCONS_00060111-exon-scaffold_334-1575043694:56561..56627Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1575043694:56295..56396TCONS_00060111-exon-scaffold_334-1575043694:56295..56396Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1575043694:55790..55858TCONS_00060111-exon-scaffold_334-1575043694:55790..55858Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1575043694:55043..55383TCONS_00060111-exon-scaffold_334-1575043694:55043..55383Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1510915933:57138..57589TCONS_00060111-exon-scaffold_334-1510915933:57138..57589Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1510915933:56561..56627TCONS_00060111-exon-scaffold_334-1510915933:56561..56627Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1510915933:56295..56396TCONS_00060111-exon-scaffold_334-1510915933:56295..56396Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1510915933:55790..55858TCONS_00060111-exon-scaffold_334-1510915933:55790..55858Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1510915933:55043..55383TCONS_00060111-exon-scaffold_334-1510915933:55043..55383Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1491911889:57138..57589TCONS_00060111-exon-scaffold_334-1491911889:57138..57589Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1491911889:56561..56627TCONS_00060111-exon-scaffold_334-1491911889:56561..56627Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1491911889:56295..56396TCONS_00060111-exon-scaffold_334-1491911889:56295..56396Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1491911889:55790..55858TCONS_00060111-exon-scaffold_334-1491911889:55790..55858Clytia hemisphaericaexon
TCONS_00060111-exon-scaffold_334-1491911889:55043..55383TCONS_00060111-exon-scaffold_334-1491911889:55043..55383Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060111-proteinTCONS_00060111-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:55043..57589 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0730699	0.102761	0.198461	0.271136	0	0.229968	0.927216	0.598856	1.33568	0.583763	0.576066	0.82106	5.03309	5.85532	7.45337	7.64376	3.59288	4.14061	10.0947	10.7335	3.9612	3.59884	1.96041	4.53074	4.4801	2.87225	2.6935	1.69034	8.46037	8.7144
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR001293Znf_TRAF
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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