Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060111 ID=TCONS_00060111|Name=TCONS_00060111|organism=Clytia hemisphaerica|type=transcript|length=1031bp AAAAAAGTCAATTATGAGTGGTATTACCTACTCGTTGATTGACTGCCAAG ATCATTTTTTGTTTAGTAAtaattattatatattttgtgtttgaaagatt tattgaaaaattagGTAACTATGAGTGAAGGAAAACAGAGTCAATTTCGC CGCGAAGAAGAGGAGATTGCCAAAGGTGCCAGAGCCATGGAGGATCCTGA AAGATGTTCAATTTGTTTACAACCAAAAGCTCCGAATTCTCCATCCAACA AGTGTGATCAATGTTTGGATAAAATGAACAAAGTTCCAACAGGATTCGCA TTCAAAGCGGTGGAAGGCCAGGGAGATAAAGAATTTGAATGTCCCATTTG TTTGTGTTTAATCAAGGGAGCAACTGAGCTTACTTGTGAACATTTGATGT GTGGGGAATGTTTGCTTCACTATGAGAAAGGACAAACTGAGAAAGCAGAA AAagaAGTGGCGAAGAAAAATCCCAAATTTCTTTGCAGTGTATGCATGAC ACCTTACAAAGTTCAAGATaaaaagtcgGTAAAGTCCACTGATCgtttta tacaaaataaaatcagGGTTCATTGCATGCAAAAGGATTGTCCGTGGATT GGTTCCATCAAGGATTATGAGgtccACGTTAAGAAATGTGACTATGGCAA AATAAAATGCCCATATTTCGAGTTGGGTTGTCTCAATACGTTTGAGGAGC AAAATTTACCAAAACACAACGCAATGAATCGACAAATCCACGAAGCTTTG CTTTTGAATGTCGTAAATTTGTTGGCGAAAGAGAGACTCGAAAATCGAAC ACTTCtcgaaaaccaaaacaaaacaatcgaaCGTTTCGAAGAAAGATTGG GTAAAATTGAAGTAGAAAACAAGGACCTGGTGGACAAATACGAGACCCAA TCCAATCTTCTCATAAAAAATACTAAGGAAATCGGGATCAGGTGCAGTTA GCGTGGTCACTGGTTGGATTCTTTAGTAGTGGAGAGCACTGTTAAAGAAT ATAACCTAATGTCGTTTAACCTAATAATGTT Run BLAST on NCBI protein sequence of TCONS_00060111-protein >TCONS_00060111-protein ID=TCONS_00060111-protein|Name=TCONS_00060111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MSEGKQSQFRREEEEIAKGARAMEDPERCSICLQPKAPNSPSNKCDQCLD KMNKVPTGFAFKAVEGQGDKEFECPICLCLIKGATELTCEHLMCGECLLH YEKGQTEKAEKEVAKKNPKFLCSVCMTPYKVQDKKSVKSTDRFIQNKIRV HCMQKDCPWIGSIKDYEVHVKKCDYGKIKCPYFELGCLNTFEEQNLPKHN AMNRQIHEALLLNVVNLLAKERLENRTLLENQNKTIERFEERLGKIEVEN KDLVDKYETQSNLLIKNTKEIGIRCS Run BLAST on NCBI transcript from alignment at scaffold_334:55043..57589- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060111 ID=TCONS_00060111|Name=TCONS_00060111|organism=Clytia hemisphaerica|type=transcript|length=2547bp|location=Sequence derived from alignment at scaffold_334:55043..57589- (Clytia hemisphaerica) AAAAAAGTCAATTATGAGTGGTATTACCTACTCGTTGATTGACTGCCAAG
ATCATTTTTTGTTTAGTAATAATTATTATATATTTTGTGTTTGAAAGATT
TATTGAAAAATTAGGTAACTATGAGTGAAGGAAAACAGAGTCAATTTCGC
CGCGAAGAAGAGGAGATTGCCAAAGGTGCCAGAGCCATGGAGGATCCTGA
AAGATGTTCAATTTGTTTACAACCAAAAGCTCCGAATTCTCCATCCAACA
AGTGTGATCAATGTTTGGATAAAATGAACAAAGTTCCAACAGGATTCGCA
TTCAAAGCGGTGGAAGGCCAGGGAGATAAAGAATTTGAATGTCCCATTTG
TTTGTGTTTAATCAAGGGAGCAACTGAGCTTACTTGTGAACATTTGATGT
GTGGGGAATGTTTGCTTCACTATGAGAAAGGACAAACTGAGAAAGCAGAA
AAGTAAGTTCAAGAAATAAATTTTTTGATATTCGAATATTGTGCTTTTCC
AGAAAAAATTTGAGTATGGGTGGGGGGGTGGCTATAGGATAAAACATTTT
TAGGAAATTTACCCCGTAGAATTGTGACTTTTGACCCCCTGGACAAGCAT
TAGTTGACCCCCTGGACACTCAAAACTACCTTCAAACAGAGCAAAATTAC
CCTCAAACAGAACCATTTTACCTCCCGGACAAGGCAAATTTTGATGACTT
TTCACTACTCCCCGGAAAATATATCCTCAACCCCCAAGTATGAAAATTTT
CTGGAAGAGCCCATTCCAACATTAAAACATTTTTAAAAGGCAAACGCAGA
AGCTGAAAATGGTGATAACTTGAAAAAAATTAACTTGCGTTGATCTAGAA
GATAATAAGAATAGGTTTTAATTTATTTCAAGTTTTCATCCCTTAAAATA
AAGAGTACCATTTTCATTTTTGAAATTAATATGCTATATATGGGACAAAT
TTTTCTTTTCAGAGAAGTGGCGAAGAAAAATCCCAAATTTCTTTGCAGTG
TATGCATGACACCTTACAAAGTTCAAGATGTGAGTTATCTATTTTTCATT
CAATCCGATTCGAGCCGGGTATTCGAGTAGTACTTTTCATGCGTAAAATA
AGAATTTCAGCAATACTTTACATCAGTATTAAAGGTGATAAGGTAACATG
CAATGCTACCCACTAAACAAGTTCTTTATTTTCATTTTTTCAGAAAAAGT
CGGTAAAGTCCACTGATCGTTTTATACAAAATAAAATCAGGGTTCATTGC
ATGCAAAAGGATTGTCCGTGGATTGGTTCCATCAAGGATTATGAGGTAAA
GTCACAAACGCACTCTTTTTTTATTTTATAAGAACCATTTTGTAGAGGCT
CGGCTGTTCTTAAACTCAAAAAACTTTTCTCTTCCTTTTGTTAGGGCAAG
ATTCAGGGGTATTAGGTTTTCTATCTAATTTTGTTCTTCTTTGCCCCTTT
CCTTGCTAAAACTTCATTCCAGGTCATACCAGACTCGGCTTCCTTTTTAC
ACTGTTACAATTTTTTGACGCTTTTGTGTTGTGACGCTTTAGGGCTTATC
TTATTAAAATCGAACAAGCTTCCATTGGCTATGAAGTGAAAAGTATACCA
CCCCTTGACCCTGAATCTTCATCCCAACATTTTTTGTTTTGTAATACGAT
TACTAGGACAGTGAAAATCAGGTAAAAGACCCATGCTATGACACAAACGA
ATTAAGACTTATCTCCTTTTTTATTTTGTAGGTCCACGTTAAGAAATGTG
ACTATGGCAAAATAAAATGCCCATATTTCGAGTTGGGTTGTCTCAATACG
GTAAGTTTTCTTTCATCAATAAAAAGATAATTTTTTCAAATGGAGATGCT
CCGGAGAAAGATTTTATTCATACTCCATGTCTTCTGTATAACTTTAATAA
AGAAACTAGAAATTGTTTTTTATAAGGTAGCCTCCCTGCTAATTTAAACT
TCTGTTAATCGAACTAATTTTCCGTCATGGAGAAACCTTCGTCTTCGTAT
TATTGCTATCCATAATTCGGATCTCTTGACAAATTAGATCCTTTGTTCAT
GAATATTGCCCTTATGTATTACAATGAAGTGAAAACAGCCGCTCTCATGT
TGTCTTCTAGGTCAACTGTATAAAGAACACAGTTTTTGAATAAGTTGTTT
TCACTTCTCCAGTTTCTATCATGTTTGTCAGCTCTTATGAACCCGTTTGT
CTTTAGTTTGAGGAGCAAAATTTACCAAAACACAACGCAATGAATCGACA
AATCCACGAAGCTTTGCTTTTGAATGTCGTAAATTTGTTGGCGAAAGAGA
GACTCGAAAATCGAACACTTCTCGAAAACCAAAACAAAACAATCGAACGT
TTCGAAGAAAGATTGGGTAAAATTGAAGTAGAAAACAAGGACCTGGTGGA
CAAATACGAGACCCAATCCAATCTTCTCATAAAAAATACTAAGGAAATCG
GGATCAGGTGCAGTTAGCGTGGTCACTGGTTGGATTCTTTAGTAGTGGAG
AGCACTGTTAAAGAATATAACCTAATGTCGTTTAACCTAATAATGTT Coding sequence (CDS) from alignment at scaffold_334:55043..57589- >TCONS_00060111 ID=TCONS_00060111|Name=TCONS_00060111|organism=Clytia hemisphaerica|type=CDS|length=4155bp|location=Sequence derived from alignment at scaffold_334:55043..57589- (Clytia hemisphaerica) TTTGAGGAGCAAAATTTACCAAAACACAACGCAATGAATCGACAAATCCA CGAAGCTTTGCTTTTGAATGTCGTAAATTTGTTGGCGAAAGAGAGACTCG AAAATCGAACACTTCTCGAAAACCAAAACAAAACAATCGAACGTTTCGAA GAAAGATTGGGTAAAATTGAAGTAGAAAACAAGGACCTGGTGGACAAATA CGAGACCCAATCCAATCTTCTCATAAAAAATACTAAGGAAATCGGGATCA GGTGCAGTTAGGTCCACGTTAAGAAATGTGACTATGGCAAAATAAAATGC CCATATTTCGAGTTGGGTTGTCTCAATACGAAAAAGTCGGTAAAGTCCAC TGATCGTTTTATACAAAATAAAATCAGGGTTCATTGCATGCAAAAGGATT GTCCGTGGATTGGTTCCATCAAGGATTATGAGAGAAGTGGCGAAGAAAAA TCCCAAATTTCTTTGCAGTGTATGCATGACACCTTACAAAGTTCAAGATA TGAGTGAAGGAAAACAGAGTCAATTTCGCCGCGAAGAAGAGGAGATTGCC AAAGGTGCCAGAGCCATGGAGGATCCTGAAAGATGTTCAATTTGTTTACA ACCAAAAGCTCCGAATTCTCCATCCAACAAGTGTGATCAATGTTTGGATA AAATGAACAAAGTTCCAACAGGATTCGCATTCAAAGCGGTGGAAGGCCAG GGAGATAAAGAATTTGAATGTCCCATTTGTTTGTGTTTAATCAAGGGAGC AACTGAGCTTACTTGTGAACATTTGATGTGTGGGGAATGTTTGCTTCACT ATGAGAAAGGACAAACTGAGAAAGCAGAAAATTTGAGGAGCAAAATTTAC CAAAACACAACGCAATGAATCGACAAATCCACGAAGCTTTGCTTTTGAAT GTCGTAAATTTGTTGGCGAAAGAGAGACTCGAAAATCGAACACTTCTCGA AAACCAAAACAAAACAATCGAACGTTTCGAAGAAAGATTGGGTAAAATTG AAGTAGAAAACAAGGACCTGGTGGACAAATACGAGACCCAATCCAATCTT CTCATAAAAAATACTAAGGAAATCGGGATCAGGTGCAGTTAGGTCCACGT TAAGAAATGTGACTATGGCAAAATAAAATGCCCATATTTCGAGTTGGGTT GTCTCAATACGAAAAAGTCGGTAAAGTCCACTGATCGTTTTATACAAAAT AAAATCAGGGTTCATTGCATGCAAAAGGATTGTCCGTGGATTGGTTCCAT CAAGGATTATGAGAGAAGTGGCGAAGAAAAATCCCAAATTTCTTTGCAGT GTATGCATGACACCTTACAAAGTTCAAGATATGAGTGAAGGAAAACAGAG TCAATTTCGCCGCGAAGAAGAGGAGATTGCCAAAGGTGCCAGAGCCATGG AGGATCCTGAAAGATGTTCAATTTGTTTACAACCAAAAGCTCCGAATTCT CCATCCAACAAGTGTGATCAATGTTTGGATAAAATGAACAAAGTTCCAAC AGGATTCGCATTCAAAGCGGTGGAAGGCCAGGGAGATAAAGAATTTGAAT GTCCCATTTGTTTGTGTTTAATCAAGGGAGCAACTGAGCTTACTTGTGAA CATTTGATGTGTGGGGAATGTTTGCTTCACTATGAGAAAGGACAAACTGA GAAAGCAGAAAATTTGAGGAGCAAAATTTACCAAAACACAACGCAATGAA TCGACAAATCCACGAAGCTTTGCTTTTGAATGTCGTAAATTTGTTGGCGA AAGAGAGACTCGAAAATCGAACACTTCTCGAAAACCAAAACAAAACAATC GAACGTTTCGAAGAAAGATTGGGTAAAATTGAAGTAGAAAACAAGGACCT GGTGGACAAATACGAGACCCAATCCAATCTTCTCATAAAAAATACTAAGG AAATCGGGATCAGGTGCAGTTAGGTCCACGTTAAGAAATGTGACTATGGC AAAATAAAATGCCCATATTTCGAGTTGGGTTGTCTCAATACGAAAAAGTC GGTAAAGTCCACTGATCGTTTTATACAAAATAAAATCAGGGTTCATTGCA TGCAAAAGGATTGTCCGTGGATTGGTTCCATCAAGGATTATGAGAGAAGT GGCGAAGAAAAATCCCAAATTTCTTTGCAGTGTATGCATGACACCTTACA AAGTTCAAGATATGAGTGAAGGAAAACAGAGTCAATTTCGCCGCGAAGAA GAGGAGATTGCCAAAGGTGCCAGAGCCATGGAGGATCCTGAAAGATGTTC AATTTGTTTACAACCAAAAGCTCCGAATTCTCCATCCAACAAGTGTGATC AATGTTTGGATAAAATGAACAAAGTTCCAACAGGATTCGCATTCAAAGCG GTGGAAGGCCAGGGAGATAAAGAATTTGAATGTCCCATTTGTTTGTGTTT AATCAAGGGAGCAACTGAGCTTACTTGTGAACATTTGATGTGTGGGGAAT GTTTGCTTCACTATGAGAAAGGACAAACTGAGAAAGCAGAAAATTTGAGG AGCAAAATTTACCAAAACACAACGCAATGAATCGACAAATCCACGAAGCT TTGCTTTTGAATGTCGTAAATTTGTTGGCGAAAGAGAGACTCGAAAATCG AACACTTCTCGAAAACCAAAACAAAACAATCGAACGTTTCGAAGAAAGAT TGGGTAAAATTGAAGTAGAAAACAAGGACCTGGTGGACAAATACGAGACC CAATCCAATCTTCTCATAAAAAATACTAAGGAAATCGGGATCAGGTGCAG TTAGGTCCACGTTAAGAAATGTGACTATGGCAAAATAAAATGCCCATATT TCGAGTTGGGTTGTCTCAATACGAAAAAGTCGGTAAAGTCCACTGATCGT TTTATACAAAATAAAATCAGGGTTCATTGCATGCAAAAGGATTGTCCGTG GATTGGTTCCATCAAGGATTATGAGAGAAGTGGCGAAGAAAAATCCCAAA TTTCTTTGCAGTGTATGCATGACACCTTACAAAGTTCAAGATATGAGTGA AGGAAAACAGAGTCAATTTCGCCGCGAAGAAGAGGAGATTGCCAAAGGTG CCAGAGCCATGGAGGATCCTGAAAGATGTTCAATTTGTTTACAACCAAAA GCTCCGAATTCTCCATCCAACAAGTGTGATCAATGTTTGGATAAAATGAA CAAAGTTCCAACAGGATTCGCATTCAAAGCGGTGGAAGGCCAGGGAGATA AAGAATTTGAATGTCCCATTTGTTTGTGTTTAATCAAGGGAGCAACTGAG CTTACTTGTGAACATTTGATGTGTGGGGAATGTTTGCTTCACTATGAGAA AGGACAAACTGAGAAAGCAGAAAATTTGAGGAGCAAAATTTACCAAAACA CAACGCAATGAATCGACAAATCCACGAAGCTTTGCTTTTGAATGTCGTAA ATTTGTTGGCGAAAGAGAGACTCGAAAATCGAACACTTCTCGAAAACCAA AACAAAACAATCGAACGTTTCGAAGAAAGATTGGGTAAAATTGAAGTAGA AAACAAGGACCTGGTGGACAAATACGAGACCCAATCCAATCTTCTCATAA AAAATACTAAGGAAATCGGGATCAGGTGCAGTTAGGTCCACGTTAAGAAA TGTGACTATGGCAAAATAAAATGCCCATATTTCGAGTTGGGTTGTCTCAA TACGAAAAAGTCGGTAAAGTCCACTGATCGTTTTATACAAAATAAAATCA GGGTTCATTGCATGCAAAAGGATTGTCCGTGGATTGGTTCCATCAAGGAT TATGAGAGAAGTGGCGAAGAAAAATCCCAAATTTCTTTGCAGTGTATGCA TGACACCTTACAAAGTTCAAGATATGAGTGAAGGAAAACAGAGTCAATTT CGCCGCGAAGAAGAGGAGATTGCCAAAGGTGCCAGAGCCATGGAGGATCC TGAAAGATGTTCAATTTGTTTACAACCAAAAGCTCCGAATTCTCCATCCA ACAAGTGTGATCAATGTTTGGATAAAATGAACAAAGTTCCAACAGGATTC GCATTCAAAGCGGTGGAAGGCCAGGGAGATAAAGAATTTGAATGTCCCAT TTGTTTGTGTTTAATCAAGGGAGCAACTGAGCTTACTTGTGAACATTTGA TGTGTGGGGAATGTTTGCTTCACTATGAGAAAGGACAAACTGAGAAAGCA GAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00060111-exon-scaffold_334-1575043694:57138..57589 | TCONS_00060111-exon-scaffold_334-1575043694:57138..57589 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1575043694:56561..56627 | TCONS_00060111-exon-scaffold_334-1575043694:56561..56627 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1575043694:56295..56396 | TCONS_00060111-exon-scaffold_334-1575043694:56295..56396 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1575043694:55790..55858 | TCONS_00060111-exon-scaffold_334-1575043694:55790..55858 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1575043694:55043..55383 | TCONS_00060111-exon-scaffold_334-1575043694:55043..55383 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1510915933:57138..57589 | TCONS_00060111-exon-scaffold_334-1510915933:57138..57589 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1510915933:56561..56627 | TCONS_00060111-exon-scaffold_334-1510915933:56561..56627 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1510915933:56295..56396 | TCONS_00060111-exon-scaffold_334-1510915933:56295..56396 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1510915933:55790..55858 | TCONS_00060111-exon-scaffold_334-1510915933:55790..55858 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1510915933:55043..55383 | TCONS_00060111-exon-scaffold_334-1510915933:55043..55383 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1491911889:57138..57589 | TCONS_00060111-exon-scaffold_334-1491911889:57138..57589 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1491911889:56561..56627 | TCONS_00060111-exon-scaffold_334-1491911889:56561..56627 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1491911889:56295..56396 | TCONS_00060111-exon-scaffold_334-1491911889:56295..56396 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1491911889:55790..55858 | TCONS_00060111-exon-scaffold_334-1491911889:55790..55858 | Clytia hemisphaerica | exon |
TCONS_00060111-exon-scaffold_334-1491911889:55043..55383 | TCONS_00060111-exon-scaffold_334-1491911889:55043..55383 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_334 | supercontig | scaffold_334:55043..57589 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0046872 | metal ion binding |
GO:0008270 | zinc ion binding |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0046872 |
metal ion binding |
molecular_function |
GO:0005515 |
protein binding |
molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|