TCONS_00060123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060123
Unique NameTCONS_00060123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060123 ID=TCONS_00060123|Name=TCONS_00060123|organism=Clytia hemisphaerica|type=transcript|length=847bp
CTAACTGTTTAGATGTTCAGCGTCGACTTCCATCTTGTTTTAAAAAAGTA
GGAAAAAGGGAATTATGCACTTGAATCTCTCAAATAGAATTCAAAATCAT
TATGGAGGACTTAGTTAACGACGAGAGAAAGTGGTGCGAAAACCAGCACG
GAATTGTTGATTCATTGCTGGAGCCAATTTGTTATTGTACTCTCATTGTT
TCCATTGGACCTTATCTCTCCAAATATTATTTCGTCATCACCATCGTAAC
TCTGATCCTTGTTGTCCTGGCACTTCACCTCAAACGCGAACGATGTGCTA
AAAAAAGTTTACAGGAACAGTTTTTCATACGGCCTGGAAGAGGGAAAACT
TTGATCGTTCGAAACAAAGCTATCGGTGTGCCCGGGAAAAGTCAAGAAGA
TTTGGCGCGTTTTCATAATGGTTTTCGACGCGAGAATTATGCATCGGAAA
AACGATCAAGCACACGAAACAGACTGTACAAATTGAAAGGACATAAGTTG
TTCAGAACAATgccttcttgatttttttccttgGTCCACAGGTCCACATA
ACGAATGCATCCATAACTCTAACAATTTCCTTGTTCTGTCCGTGTCGTTT
GAGTTACGGAGACTCTATTAGTATAAACAAATGTAAGCAATtgtaaattt
tagaaaaaaatgccTATTCTTCATCGAAGATTATTTTGTACATCAGCCCC
CAAAATCCTGTTGCAGAAAGGGATGTTATTCTACAAGTTTTGTTCCAATT
CGATTTTTATTTCGACAGGGAGAAAGACACTGTGATGCTAATAAAAATGT
CGTTGTTTTCAAAAAGTCAGTGCAAAAgctatatttttatgttttac
Run BLAST on NCBI

protein sequence of TCONS_00060123-protein

>TCONS_00060123-protein ID=TCONS_00060123-protein|Name=TCONS_00060123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MEDLVNDERKWCENQHGIVDSLLEPICYCTLIVSIGPYLSKYYFVITIVT
LILVVLALHLKRERCAKKSLQEQFFIRPGRGKTLIVRNKAIGVPGKSQED
LARFHNGFRRENYASEKRSSTRNRLYKLKGHKLFRTMPS
Run BLAST on NCBI

transcript from alignment at scaffold_334:175164..176266-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060123 ID=TCONS_00060123|Name=TCONS_00060123|organism=Clytia hemisphaerica|type=transcript|length=1103bp|location=Sequence derived from alignment at scaffold_334:175164..176266- (Clytia hemisphaerica)
CTAACTGTTTAGATGTTCAGCGTCGACTTCCATCTTGTTTTAAAAAAGTA
GGAAAAAGGGAATTATGCACTTGAATCTCTCAAATAGGTAAAGCAATGAT
TTTTTCAAGAAACCATAAATGATAGAGAACGATTGTGAATTTAAAATCTT
GTAATGAAGTGTAAAAAATAGTTTCAAAGTGACTTAAAATAACCGTTATT
TCGTGAAAATAACTTTAACGAACGGGAGAAGGTACGGAATATAAAGTTTA
CTTTGACCAAATAAATGTAGCATTTGGACGTACGCAAGCAGGGAGCTGGT
TCATATTTTAACGTTACTTTTTGAACTTTGGTTCTATTTTCAGAATTCAA
AATCATTATGGAGGACTTAGTTAACGACGAGAGAAAGTGGTGCGAAAACC
AGCACGGAATTGTTGATTCATTGCTGGAGCCAATTTGTTATTGTACTCTC
ATTGTTTCCATTGGACCTTATCTCTCCAAATATTATTTCGTCATCACCAT
CGTAACTCTGATCCTTGTTGTCCTGGCACTTCACCTCAAACGCGAACGAT
GTGCTAAAAAAAGTTTACAGGAACAGTTTTTCATACGGCCTGGAAGAGGG
AAAACTTTGATCGTTCGAAACAAAGCTATCGGTGTGCCCGGGAAAAGTCA
AGAAGATTTGGCGCGTTTTCATAATGGTTTTCGACGCGAGAATTATGCAT
CGGAAAAACGATCAAGCACACGAAACAGACTGTACAAATTGAAAGGACAT
AAGTTGTTCAGAACAATGCCTTCTTGATTTTTTTCCTTGGTCCACAGGTC
CACATAACGAATGCATCCATAACTCTAACAATTTCCTTGTTCTGTCCGTG
TCGTTTGAGTTACGGAGACTCTATTAGTATAAACAAATGTAAGCAATTGT
AAATTTTAGAAAAAAATGCCTATTCTTCATCGAAGATTATTTTGTACATC
AGCCCCCAAAATCCTGTTGCAGAAAGGGATGTTATTCTACAAGTTTTGTT
CCAATTCGATTTTTATTTCGACAGGGAGAAAGACACTGTGATGCTAATAA
AAATGTCGTTGTTTTCAAAAAGTCAGTGCAAAAGCTATATTTTTATGTTT
TAC

Coding sequence (CDS) from alignment at scaffold_334:175164..176266-

>TCONS_00060123 ID=TCONS_00060123|Name=TCONS_00060123|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_334:175164..176266- (Clytia hemisphaerica)
ATGGAGGACTTAGTTAACGACGAGAGAAAGTGGTGCGAAAACCAGCACGG
AATTGTTGATTCATTGCTGGAGCCAATTTGTTATTGTACTCTCATTGTTT
CCATTGGACCTTATCTCTCCAAATATTATTTCGTCATCACCATCGTAACT
CTGATCCTTGTTGTCCTGGCACTTCACCTCAAACGCGAACGATGTGCTAA
AAAAAGTTTACAGGAACAGTTTTTCATACGGCCTGGAAGAGGGAAAACTT
TGATCGTTCGAAACAAAGCTATCGGTGTGCCCGGGAAAAGTCAAGAAGAT
TTGGCGCGTTTTCATAATGGTTTTCGACGCGAGAATTATGCATCGGAAAA
ACGATCAAGCACACGAAACAGACTGTACAAATTGAAAGGACATAAGTTGT
TCAGAACAATGCCTTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037824XLOC_037824Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060123-proteinTCONS_00060123-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060123-exon-scaffold_334-1575043694:176180..176266TCONS_00060123-exon-scaffold_334-1575043694:176180..176266Clytia hemisphaericaexon
TCONS_00060123-exon-scaffold_334-1575043694:175164..175923TCONS_00060123-exon-scaffold_334-1575043694:175164..175923Clytia hemisphaericaexon
TCONS_00060123-exon-scaffold_334-1510915933:176180..176266TCONS_00060123-exon-scaffold_334-1510915933:176180..176266Clytia hemisphaericaexon
TCONS_00060123-exon-scaffold_334-1510915933:175164..175923TCONS_00060123-exon-scaffold_334-1510915933:175164..175923Clytia hemisphaericaexon
TCONS_00060123-exon-scaffold_334-1491911889:176180..176266TCONS_00060123-exon-scaffold_334-1491911889:176180..176266Clytia hemisphaericaexon
TCONS_00060123-exon-scaffold_334-1491911889:175164..175923TCONS_00060123-exon-scaffold_334-1491911889:175164..175923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:175164..176266 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0542263	0	0	0	0	0	0	0.0185526	0.174129	0	0	0.0501157	0.468097	0	0	0.166978	0.281694	0	1.34545	0.181483	0	0.114245	0.466947	0.0584851	0.586124	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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