TCONS_00060162 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060162
Unique NameTCONS_00060162
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3043

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060162 ID=TCONS_00060162|Name=TCONS_00060162|organism=Clytia hemisphaerica|type=transcript|length=3043bp
GAGCAATTCAATATAATCCCATATTAAACCAGATTTCCACCATGGATTCT
CTCTATCAGCAAACCAAACAAGTACTTCATTTTCATTATCATCCAGGGAA
ATCAATTCATTCACTACAAAATCAAACCAACCAGACTCTTTATCATGATT
CTTAAATGAACAGCCAgcagaaaaattttctaaaggtGTCCCTTCATTAA
TATATGCTCGAATTTTTTCCCAATCGTTGGTATGAAAATTAAATGCATTT
TCAAAATTGGCATCATTTTTATTGCTCCTCCAACAAGACTTGATATGAAC
CATTTCCCCACCATCTCCTGAAGGCCAGTAAAAATCTTCTCCAAATTTCA
TNTTCAAGATACAAATTAgattcatcaaaacaaaatgttcaATCTACAAG
AGGACGCAATTCAATATAATCCCATACTAAACCAGATTTCCACCATGGAT
TCTCTCTATCAGCAAACCAAACAAGTActtcattttcattattatCCAGG
GAAATCAATTCATTCACTACAAAATCAAACCAACCAGACTCTTTATCGTG
ATTCTTAAATGAACAGCCATCAGGAAAATCTTCTAAAGGTGTCCCTTCAT
TGATATATGCTCGAATTTTTTCCCAATCCTTGGTATGAAAATTAAatgca
ttttcaaaatttgcatCATTTTTATTGCTCCTCCAACAAGACTTAATACG
AACCATTTCCCCAGCACCTCCTGAAGGCCAGTAAAAATCTTCTCCAAACT
TCATTCTCATAACAAACTGATATTCGCCACGCTTAACCAGTTTAAAAGTG
TGTTTCATCTCAAGCCAACAAACATTTTTAAGCCTCAAAACATCATGTTG
GGTATGTTCATCAAACTCTCTTGAAAAGTATTCAGGATTTGTTGAGTGAG
AGAAAGAATCGACTTCTAAACAAGATACACGTAGTGCTCCAATTGTAGAT
GTTTCCATTGTTTCGTGGTGCTTTGACTCGTTATTTGGTTTAATCAAATC
TTCTATTCTGGTTGAttcaatgttttattttatttttcattttcttctga
GAAATGGATGCAAAATTTAGTGTCTACAAAAAAATTCACATTAACAAGGA
AAAGGTTTGTCAAATTgtcgataatttttttatgagcttATGAACAAGGA
ATCCTTCAGAGAGGTAAATATACCTGTTCTTATGAATATTTATGGCTCCT
AGCAAAAActaactcgaaaaaaataagaactgAAATAATACATGAAAACA
CttattaaacaaaaaaagtaagaacagAAGAAAAGTATAGTCACGATATG
ggattttttctttacaaaTCTACTTCTACCAAAAtgttacaagatatttt
tattaatttagaTAAATAAGTTTTTATCAATATTACAGATGTGCTGTTTA
GAGATTTTTGTACAATATTAACTAATCTATACTGTTAGATTTAATTTCAA
CTAGGAAATAAAGGATATTTACTCCTATAAAATCCCTGAAGACTTATAAC
AGGACCGCAGATAAAAAATCACAGCCCTATCATTTACCATTTGTCATTAT
CAACGTTTTTCTAAAtgaggaaaaaaataaagaggACTGTTCATGATTCT
ATTTGCTAATCtgataaaaccaaaaaaaaattaatgcaatgtTTTCTGGG
GTTACAAACATTAACAAAAACAGAATGTTACttacaaaaacaccaaaata
aaaaaaatcagtccctcatagggtacctttttggaagaAGTTCGAAAGAA
tatggaaaattttgagaacattttggaatttcagtcccattcaggatcac
tttttccaaaataatgagtctcacgtagggtccatttttcaaacttcagC
GGCACACCCCTTATcagtcggcaagggtagtacccctcCCCCTCCTGGGG
AAGAAACAAATTAGAAGGGTTTTCTTGTCCTCAAATTACACACTCAAATC
GTGATTACCATTGTCATTCTTTTGTGTTCTTTTACCAAAACTTTAAATTG
TTTATGGCAGACTTCATCCatttaaattgcttttttattCCTGTAGATTC
TTCTTTGTGACCAGCATAAAATGGATTCAACTCGATATAATCCCAAATAA
TACCAGATTTCCATGACTTGTTCTCAATATCCAAAAATTGGGAGAAGACT
TCATTTGTATTACTCTTCAAAACAATTGGTTCATCCATTACCAAATCAAA
CCAACCAGACGCTTTATCATGATTTTGGAAGGAACAGCCGACaggaaaac
catcaaaaacttCTCCATCATCTaaatactttttaatttttacccAATCA
CCTGATTTGAATCGAACTTCATTTTCACAAGGAGGTGAATCTTTATTATT
TTTCCATGAGGTTCTGAATTTCACTAACTTATCATCTCCATAATAACTTG
GCCAACGaaagttttcaccaaatttcATTCTCATAATATATTTATATCGA
CCAGGGTTGACATTTTTGAAAGTATGTTTGATCTCTAGCCAACAGACTGA
TGTAAGCCTCAAAACGTCATGTTCCAGCAAAGTATCCTGTTCTTTCGAAA
AATATGATGGGTTACTAGAATGTGGAAAGAAATCAACATCCGCACATGAT
ATTCGAACACGATCATTGTATAGCTTAGCCAATTTGTAACTTAGCAAAGG
TGATTCAAATGTTGTCAATTGATTTTTTAGCTTGATTTCTTTTGGTGAAA
GATAATGtgttctttcaaaaaattcatgatTCTTTAATTTCTTGGTttca
caaaatttgtaaatgttGCCTTTCATTTCTTGGCAAGTGAGAGCAAAAGC
AAAAAGATCATTTGGGTGCAAAAAACCAAGCATATGAAATAAATCATCTC
CATTTAGTGTTCCAATTGTAGAGCTTTCCATTTTCCTGTTATATGTTTAG
TTTCAGTGACTTGATTTTTCAATGTTTCCTGATTAATGAAAAAGAGAGAA
TTTAGGTTTGAAATATCAAGATTGACCAGATTTAATCTTTGTTCATTCTT
AGGAAAGTAAAGGTGACTTTAGGCCTGACCTGATCAGTCGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_336:203472..206514+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060162 ID=TCONS_00060162|Name=TCONS_00060162|organism=Clytia hemisphaerica|type=transcript|length=3043bp|location=Sequence derived from alignment at scaffold_336:203472..206514+ (Clytia hemisphaerica)
GAGCAATTCAATATAATCCCATATTAAACCAGATTTCCACCATGGATTCT CTCTATCAGCAAACCAAACAAGTACTTCATTTTCATTATCATCCAGGGAA ATCAATTCATTCACTACAAAATCAAACCAACCAGACTCTTTATCATGATT CTTAAATGAACAGCCAgcagaaaaattttctaaaggtGTCCCTTCATTAA TATATGCTCGAATTTTTTCCCAATCGTTGGTATGAAAATTAAATGCATTT TCAAAATTGGCATCATTTTTATTGCTCCTCCAACAAGACTTGATATGAAC CATTTCCCCACCATCTCCTGAAGGCCAGTAAAAATCTTCTCCAAATTTCA TNTTCAAGATACAAATTAgattcatcaaaacaaaatgttcaATCTACAAG AGGACGCAATTCAATATAATCCCATACTAAACCAGATTTCCACCATGGAT TCTCTCTATCAGCAAACCAAACAAGTActtcattttcattattatCCAGG GAAATCAATTCATTCACTACAAAATCAAACCAACCAGACTCTTTATCGTG ATTCTTAAATGAACAGCCATCAGGAAAATCTTCTAAAGGTGTCCCTTCAT TGATATATGCTCGAATTTTTTCCCAATCCTTGGTATGAAAATTAAatgca ttttcaaaatttgcatCATTTTTATTGCTCCTCCAACAAGACTTAATACG AACCATTTCCCCAGCACCTCCTGAAGGCCAGTAAAAATCTTCTCCAAACT TCATTCTCATAACAAACTGATATTCGCCACGCTTAACCAGTTTAAAAGTG TGTTTCATCTCAAGCCAACAAACATTTTTAAGCCTCAAAACATCATGTTG GGTATGTTCATCAAACTCTCTTGAAAAGTATTCAGGATTTGTTGAGTGAG AGAAAGAATCGACTTCTAAACAAGATACACGTAGTGCTCCAATTGTAGAT GTTTCCATTGTTTCGTGGTGCTTTGACTCGTTATTTGGTTTAATCAAATC TTCTATTCTGGTTGAttcaatgttttattttatttttcattttcttctga GAAATGGATGCAAAATTTAGTGTCTACAAAAAAATTCACATTAACAAGGA AAAGGTTTGTCAAATTgtcgataatttttttatgagcttATGAACAAGGA ATCCTTCAGAGAGGTAAATATACCTGTTCTTATGAATATTTATGGCTCCT AGCAAAAActaactcgaaaaaaataagaactgAAATAATACATGAAAACA CttattaaacaaaaaaagtaagaacagAAGAAAAGTATAGTCACGATATG ggattttttctttacaaaTCTACTTCTACCAAAAtgttacaagatatttt tattaatttagaTAAATAAGTTTTTATCAATATTACAGATGTGCTGTTTA GAGATTTTTGTACAATATTAACTAATCTATACTGTTAGATTTAATTTCAA CTAGGAAATAAAGGATATTTACTCCTATAAAATCCCTGAAGACTTATAAC AGGACCGCAGATAAAAAATCACAGCCCTATCATTTACCATTTGTCATTAT CAACGTTTTTCTAAAtgaggaaaaaaataaagaggACTGTTCATGATTCT ATTTGCTAATCtgataaaaccaaaaaaaaattaatgcaatgtTTTCTGGG GTTACAAACATTAACAAAAACAGAATGTTACttacaaaaacaccaaaata aaaaaaatcagtccctcatagggtacctttttggaagaAGTTCGAAAGAA tatggaaaattttgagaacattttggaatttcagtcccattcaggatcac tttttccaaaataatgagtctcacgtagggtccatttttcaaacttcagC GGCACACCCCTTATcagtcggcaagggtagtacccctcCCCCTCCTGGGG AAGAAACAAATTAGAAGGGTTTTCTTGTCCTCAAATTACACACTCAAATC GTGATTACCATTGTCATTCTTTTGTGTTCTTTTACCAAAACTTTAAATTG TTTATGGCAGACTTCATCCatttaaattgcttttttattCCTGTAGATTC TTCTTTGTGACCAGCATAAAATGGATTCAACTCGATATAATCCCAAATAA TACCAGATTTCCATGACTTGTTCTCAATATCCAAAAATTGGGAGAAGACT TCATTTGTATTACTCTTCAAAACAATTGGTTCATCCATTACCAAATCAAA CCAACCAGACGCTTTATCATGATTTTGGAAGGAACAGCCGACaggaaaac catcaaaaacttCTCCATCATCTaaatactttttaatttttacccAATCA CCTGATTTGAATCGAACTTCATTTTCACAAGGAGGTGAATCTTTATTATT TTTCCATGAGGTTCTGAATTTCACTAACTTATCATCTCCATAATAACTTG GCCAACGaaagttttcaccaaatttcATTCTCATAATATATTTATATCGA CCAGGGTTGACATTTTTGAAAGTATGTTTGATCTCTAGCCAACAGACTGA TGTAAGCCTCAAAACGTCATGTTCCAGCAAAGTATCCTGTTCTTTCGAAA AATATGATGGGTTACTAGAATGTGGAAAGAAATCAACATCCGCACATGAT ATTCGAACACGATCATTGTATAGCTTAGCCAATTTGTAACTTAGCAAAGG TGATTCAAATGTTGTCAATTGATTTTTTAGCTTGATTTCTTTTGGTGAAA GATAATGtgttctttcaaaaaattcatgatTCTTTAATTTCTTGGTttca caaaatttgtaaatgttGCCTTTCATTTCTTGGCAAGTGAGAGCAAAAGC AAAAAGATCATTTGGGTGCAAAAAACCAAGCATATGAAATAAATCATCTC CATTTAGTGTTCCAATTGTAGAGCTTTCCATTTTCCTGTTATATGTTTAG TTTCAGTGACTTGATTTTTCAATGTTTCCTGATTAATGAAAAAGAGAGAA TTTAGGTTTGAAATATCAAGATTGACCAGATTTAATCTTTGTTCATTCTT AGGAAAGTAAAGGTGACTTTAGGCCTGACCTGATCAGTCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037852XLOC_037852Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060162-exon-scaffold_336-1491911889:203472..206514TCONS_00060162-exon-scaffold_336-1491911889:203472..206514Clytia hemisphaericaexon
TCONS_00060162-exon-scaffold_336-1510915933:203472..206514TCONS_00060162-exon-scaffold_336-1510915933:203472..206514Clytia hemisphaericaexon
TCONS_00060162-exon-scaffold_336-1575043694:203472..206514TCONS_00060162-exon-scaffold_336-1575043694:203472..206514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:203472..206514 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.807882 tpm) - - (8.86946 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.21783 3.20433 1.66355 1.81033 5.9408 4.09743 3.81456 4.01667 3.01645 2.98409 6.21785 1.99577 3.27631 1.71676 0.807882 0.994373 1.01469 0.879327 1.58533 1.57285 2.62226 2.18874 4.94986 3.69189 5.82817 8.86946 5.51686 4.44606 4.79688 4.06976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50010001500200025003000Sequence
Match NameE-valueIdentityDescription
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