TCONS_00060163 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060163
Unique Name	TCONS_00060163
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1298

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_336:47398..53498-
coding sequence from alignment at scaffold_336:47398..53498-

transcript sequence

>TCONS_00060163 ID=TCONS_00060163|Name=TCONS_00060163|organism=Clytia hemisphaerica|type=transcript|length=1298bp
tttgttCAGATCTGACTTAGAAAACGTTTTCGTTCTCTGATAGGTTAACA
ACCAGTTAGCTGGTATTTTGTGATTCAAATTTGAAGTGGTATGCATATCT
TGCTTCTCTCAATCGTACTGCTGATCCTATCTTTGGATATAAAGGCTGAT
GCATTGGCTAATTATGATGATTTACCACGTCTATCAAAGCAAAGGAACCA
ATGTATCCCAGTTGAAATTCCACAATGTAAACGTTGGTATGACCAAAGAA
GACCACCAAACATTTATACAGCTACCACAGCTGAATACCGGAATGTGAAA
AGTCTTGTTTCACAGTTATCTTTATTACCAAAAAATTATAGAGAATGTGT
AAATGACGCTACATTTTTACTGTGTGCACTTTATTCACCAGTCTGTATTA
AAGGAAGTAAACCGTTGAAACCTTGTAGAGAGTTATGCGTTAAATGGCGA
AAGAATTGTCGAAGATTGGATATTTTTAGTAATGTCGCTCTTCCTGACAA
GCTGAGAGATTGTAATGAATTGCCAGAGTTTCATAATTCAATGTGTATAC
AACCAAGCAGTTTCATAACCAAAGAACAAGAAGAAAAGAAATCGAATAAA
GATTCTTCAAAACACAAAACGTGCGATTGTAAAGACTTCAAGCAACCAAC
GCCTAAATATCGTCATTTTCGGAAAGCAGCCTACGTTATTGAAGCAACAA
TCAATTCAAGAGAAACATTAGCCAATGGGAACACTAAAATCATACTCGAC
GTTTTAAAAATCTACAAGCAAGGTAAAATTTCGATCAAATTCGGTAAACT
ACGGATGTGGTCATCTTGTTTGTGTCACAAAGACATCCAATATGGCGATA
AGAAGTATTTCTTGATTGTTGACGAAAACCAtcacaaaaagaagaaaaat
ttagaaatcaGTAAGACAACACTCGTTCTTGATGCTAcacaatatgaaaa
taaaattgacaaaTGGTACAAGAAATGTTTGAAGCGTAAAAGTTGCTAAT
AATCATTGCTATTATGAGTGacattttctgataaatattcTGGCAATCTG
AATGGAACTAATAGCAGATCTGTTTAACATGTCTTTACAAGAACATCTAA
TGTTTGCGAACCCTTTTGCTCTTAACTCTTTTGTGAGCTTTAAACCtaaa
attattcttaaaatgttcttatttcttaagaaattgggtgtttcagAGTC
TGAAATAACcattttaacttgttcttaagccatcaaagccttgttcttat
aaagtaaccTGTATCGACAGAACAAGTAAAATGATTCTGTTAGTGAtc

Run BLAST on NCBI

protein sequence of TCONS_00060163-protein

>TCONS_00060163-protein ID=TCONS_00060163-protein|Name=TCONS_00060163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MHILLLSIVLLILSLDIKADALANYDDLPRLSKQRNQCIPVEIPQCKRWY
DQRRPPNIYTATTAEYRNVKSLVSQLSLLPKNYRECVNDATFLLCALYSP
VCIKGSKPLKPCRELCVKWRKNCRRLDIFSNVALPDKLRDCNELPEFHNS
MCIQPSSFITKEQEEKKSNKDSSKHKTCDCKDFKQPTPKYRHFRKAAYVI
EATINSRETLANGNTKIILDVLKIYKQGKISIKFGKLRMWSSCLCHKDIQ
YGDKKYFLIVDENHHKKKKNLEISKTTLVLDATQYENKIDKWYKKCLKRK
SC

Run BLAST on NCBI

transcript from alignment at scaffold_336:47398..53498-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060163 ID=TCONS_00060163|Name=TCONS_00060163|organism=Clytia hemisphaerica|type=transcript|length=6101bp|location=Sequence derived from alignment at scaffold_336:47398..53498- (Clytia hemisphaerica)
TTTGTTCAGATCTGACTTAGAAAACGTTTTCGTTCTCTGATAGGTTAACA
ACCAGTTAGCTGGTATTTTGTGGTTGGTATCTGTTACATATTTTTCTCAT
GAATTCAATTTGGATTCTTTGAATGAAGATAGATTACTCATAAGCTTTGT
TCTGAATTATTCGAAGTTATGAAATAACAAATATACTACCTAGCTGGTAC
ACACAAATTCATTTCAATGTGTATTTGATATGTTTACAACGTCCATATAA
CGATAGATGAACGTTAAAACACGTTGGTGCCAGCTGGGTATCGAACTAAA
TTCGGGTTCATTGATTTTCAACGGTACTTGTAGATTTGAATAACTTTAGT
AGTCTTAAATTGTTGATTTTCTTTGACTTTTTTAGATTCAAATTTGAAGT
GGTATGCATATCTTGCTTCTCTCAATCGTACTGCTGATCCTATCTTTGGA
TATAAAGGCTGATGCATTGGCTAATTATGATGATTTACCACGTCTATCAA
AGCAAAGGAACCAATGTATCCCAGTTGAAATTCCACAATGTAAACGTTGG
TATGACCAAAGAAGACCACCAAACATTTATACAGCTACCACAGCTGAATA
CCGGAATGTGAAAAGTCTTGTTTCACAGTTATCTTTATTACCAAAAAATT
ATAGAGAATGTGTAAATGACGCTACATTTTTACTGTGTGCACTTTATTCA
CCAGTCTGTATTAAAGGAAGTAAACCGTTGAAACCTTGTAGAGAGTTATG
CGTTAAATGGCGAAAGAATTGTCGAAGATTGGATATTTTTAGTAATGTCG
CTCTTCCTGACAAGCTGAGAGATTGTAATGAATTGCCAGAGTTTCATAAT
TCAATGTGTATACAACCAAGCAGTTTCATAACCAAAGAACAAGGTATGTT
TCCAGGGACTATGGCATCAGTTGGGCACATACCCTGGTTTGAGCATATTT
TTTCAAAGCAAAAGGAAAATCTTCTAATTCGTGATATTTATGACATAAAT
TTATGGGAGCGCCTCGGTTTTTGTCAATAATAGGAAATTTTAAACAACTT
TTCTCTAACCTAAATTGGTAAAATCCCGGGATGTTTCCGTATTTAAACTC
GTCATGAAAATCATGAATCCATGTATAGAAATTTTGAGAAAAGTTTAGTT
TTAGGCATTTACAAAAGTAAAGTTGCCGCTGCAAACTGCTCTCGATGCGC
TATAGACAATCACACCCCTTTGAACCGGTGGAACCTCCTGTCTCAATTAA
AGGATTGATAAATTCGATTATATTATCCCGGTGAAAGAAATAGCCTAAGG
TCCAACCCCCTCTTTAGAAAACTACTCTGATTCTAATCTCAACTTGAAAA
CACACAAATATATGAGAATCCTCCCATAGGTCGTTGAGTTGTAAACAAAA
GATAGGGATTTTCAATTAAGCTTGGTCGGTAAGTTTGTATTTGGCATCTC
CATTTTATCCCATCGAGTTATTGAGACCGGGTTTTTTAATCCTAATGTGT
GATTAATTTATGACTCTATTCTAATTTGCCGTCTCAAGTACGAAGTCTTT
TCCTAATAGAAACAATAAATATCTGTTAGAATATCTTCCTTAAATGGGAA
ATTTAAACTCATTAGTTTCCATGCCTCCTTCTTTCTTATTAGGTCATTGA
TTCAGGGATCTACATATACATCAGTATCTTTCCACATACACATGTTTTGT
ATCATGTTAAACCTAAAAACGCCTCTGCCTCACTCGTCTCACTGCACCAG
TGGAGCTTCTTTTCACAGTGAAATGAAACTTTCTATCAAAATCCCAATGG
TGATAGAAATTATCTTTCTCAGCTATTTTCCCTTCTCAAATCTCAAACAA
TAATAGACACATAAGGCATAGTTTATTGGATAGATCTTGCAGTGAACACG
CCTTTAGTATCGAAATAAATATATGTTACATTATAAAAATAAAATTGGTT
ACACTAAGTATTACAGTGGTCATTTGTGTAAATTTTGACATCACGCTAGC
TAATAATAATAAAAAATACTTTTTTAGAATGCATGGTTATTGTTAATATC
CTCTAAAGTAATATACTTGTATTGTTGAAATAATTTTACATGTTCAAATT
CATCAAATGAAAATATGTGTATAATTACGTAGAACTTGAGAATAACTAAA
TTGTACTGTGACGAAGCATGTAGCGTAAAACCCCCAGTGGCTGTTTATTC
TGGAGGAAACATTATCCCCGACCAAGGCAGCCGTCACGCCGACCTTCGGA
GGTTAAAGGTCCTCCCACTTTATAATGTGAAATATAACGTAAATAATTCA
AAACATTTTATAGTTTGGTTTCTGGTATAAAGTTCTTTCGTCGTTTCAAA
TGTCCACGTTAGAGTGTCGAATTTTTGTAATGTAACGTATTTTGCAACTG
TGTAATTCGAATGTATGTTTCAATGATAGTTGTGTCCCGGTATCGCTCCA
GTAGAACATCTTGATCGTCGGGTCATGGTTGCCCAGCATTGATAAACGGG
TTTTCCAGGTTCAGGAGCGTGTAAGAAAAAGAAATAGCATTAATGTTATA
ACAGTAAACTTAAATGTGAAACTTAACTTAGTTCAAGGCGTATGCAAGAG
CAAGGATTGACAAGCTGACAAGCAGCTTCTTTAAAGCATATTGCGCATGC
GCAGTTTGTTCCAATCTGCGCAAGATGGTAGATTTTCGTACGAAAAACGC
GGAGAAGCTCGATTTCCACCTTTCTTCGATCGTTGGAAATCACACTGTTC
TTAGGTAAAAAAATCTAACTAGATGTGGATGGTTTATGAGTGCAATTTTT
TCATTGAACTTTTAATGAGGCCCCCCCAGCGGCACCCTTAATCTTGCCAT
CACGCAAAAAAATTTTCTCCATCATGCATCACGAAAATTTGTCATCACGC
AAAAAATAGTGAAAAATAGCCCAAATCACGCATCACGCCTCAAATTTTTG
CCCTATCACGCATCACGCCATCACGCCAAAAAAAAATCTCCAATCACGCC
ATCACGCAAGAAAAAAGTCCCAATCACGCCATCACGCAAACGGCTGGGGG
GGGGCTCTTAAATGGGATGAAAAAAGATTTTCCAGTTGGGTTGAAATTGT
ACGGAATCCTTTCCACCGGGAATGAAAAATTTGAACAAATCTTTCAGTGA
GAGGGGGATCCCAACGGGTCTGTGACACAGGGGTCTAAAAAACGGGGTTT
TTTTAGCTTAAAATTTACCAATTTTGTTTGAATCAGTTTAAGTGGGATGC
ATCCCGGGGGAGGCACTCAGGCAAACGGGTCATGCCGCTGATCAGGGCCT
CTTTGTTAGGTTCTAAAGACATCTAACAGGGTCCCTAATTTACTAATTTT
CAAGATTTGTATCGAACAGGATCGACTTTTGGTTATTTTGAACAATTTTT
AGAGTCCACCCTAATAAGATATTTTTCAATCTTTTGTCAATATTTTGTCA
TTTTTGCTACTTGTTGTAGGAATTTTTTTTCGATTTTTCGTTCCGACAGG
GTCCCAAATTTATTACATTCATATGACAGGGTCCAAAACTTAAATCTCTT
AAATGTAATTTCATTTGCAAGATCCAAATGTCTACCGCTGAATATCAAAT
GGTTATTCATTACTTTTCAGAAGAAAAGAAATCGAATAAAGATTCTTCAA
AACACAAAACGTGCGATTGTAAAGACTTCAAGCAACCAACGCCTAAATAT
CGTCATTTTCGGAAAGCAGCCTACGGTCAGTAAATATCTTGTTCAATTCA
TATTAATAGTTTATTTCGGGCAGTCGAAGAAAATTAGAGAAGTTAAGGGT
TCAAATTTGAAGGGGGTAATAGGTTTCCGAGGTTCCGAGCCAAAGTTCGA
AAATTGACCCTTTAGACTGATATTTTGAAAGTTTAGCTCCTTTTTGACGA
ATTTACGACCCTTTTCCCAATTTTTAGCCTAAATTTTGAAACTTAAATTC
AAATTACAAGAGTCTATGGTCCTGGGAGTTTATCCTGTTTTTTTCTTAAT
TTTTGGATTTTGCAGAGACTCAATGGCGAATATATAGACCTTTTTGACTC
GTACATACCCGACACCCATTCTCTCTCTGTCCTAGGAATGGAACTTACAC
ACGTTTTTAATAAAGACATCAAAGGTTTTGAAGCTTTGATGAGATGTTTT
TAACTTTTTGAGTTTTGAGCCAACAATGTTTTTAAGTTGTTTTGAGTAAT
TTTTTCTTATATATTTTGTTCAAATAAAGTACGTAAAGAGGGAAATTAAG
CCAAGTTCAAGTAGAAATAAAGGTTTTCCCACCGAATGGGTAAATAGCTA
TGAATCGATTGCAGCTATCATAAATGGAAAACTATACTCCAATTTTTGTC
TCCGCTGAAAATAATCAAATATGTAACAACCTCACTGCAAAACATGTGCT
TTCTTTCAATCCCCCTGAATTCTTTGATACGTGAAAACAATTGAATTCGA
ATCCCCGGCAATAAAAAACATTATCCAATCCACATCGACTTTCAGTCCGT
TATTTTTACCCCCCCCCCCCCCAAAAAAAAAAAAAAATTTCCAACCCCCA
CCGACTTTTTTTTCTTTTTTTTTTCCCCCCCCCCCCCCACAAGCTGAAAA
AATCTTACGGGGTCTGTAAGAAGTAACCTGATAACAGCTGTTCATAATTT
TCTTGCGTGCACGGTAAACCTCTGAAGGCACTTCAAAATTATACATCTGA
GGAAAATAGTCCTCCCGCGGAAAATTTTACAACAAGAATCTTGTTGTGCG
CCATGCGCCAGAAAGTCAAAAATTAATACGGCGCCCTATTCATAAACACA
ATGACGCAACTTTGTTGTCATCCCCAGTCCTTTTAGACGAACGCGGTCCT
TACGATTTCGAGATTGCATATTCGTCAGATTGTATGTTTTCACCCATTCC
TTTAGAGCTTCAGCGTGGTGGGCAGAAAACAACCACAATCTGATCTCAGG
TTAGTGAGAAGGGGGTGTGTATAAGGACAACAAAAAAATATGATGCAATC
ACCAAACTTATATTAAAGTATTTTCTTCCTTGATAGTTATTGAAGCAACA
ATCAATTCAAGAGAAACATTAGCCAATGGGAACACTAAAATCATACTCGA
CGTTTTAAAAATCTACAAGCAAGGTAAATTTTGGCTAAAGTTCATCTACT
AACTCCAAGAAGATTTTGCAGCATACTTCACTTTGGAGACCTCAATTTTA
TACAAAACCAAAACATTATATATGAAATGTAGTATTACCGTGAATCTTAT
CGATTCCGTCCGTTTTGAGGGTCATTTTTCTTGATAACAGGGTAGATATT
ATAGTTTCTAGGGCGTTTGGAAGTTTTTTGTGTTTGCATTCTATGTTCGT
GTCATTGCTTAAAAAAATCATACTGCACTTATTTTCCTACAAGACATTCC
TGTATCGGTGACCAGGTGGGGATATCTAAGCCATTGGGGACCCAGATCGG
GGAAAGAATTGTAAAGTAAACTTTTACCCAGTCCCTTGCTTAGTCCCTTA
GCTCGCTTTTTATGATATAACACCCTCGATGGTATCGAAAGAGGAAGCTG
TAATTTGAAATGTTTTTGTTTGCAGGTAAAATTTCGATCAAATTCGGTAA
ACTACGGATGTGGTCATCTTGTTTGTGTCACAAAGACATCCAATATGGCG
ATAAGAAGTATTTCTTGATTGTTGACGAAAACCATCACAAAAAGAAGAAA
AATTTAGAAATCAGTAAGACAACACTCGTTCTTGATGCTACACAATATGA
AAATAAAATTGACAAATGGTACAAGAAATGTTTGAAGCGTAAAAGTTGCT
AATAATCATTGCTATTATGAGTGACATTTTCTGATAAATATTCTGGCAAT
CTGAATGGAACTAATAGCAGATCTGTTTAACATGTCTTTACAAGAACATC
TAATGTTTGCGAACCCTTTTGCTCTTAACTCTTTTGTGAGCTTTAAACCT
AAAATTATTCTTAAAATGTTCTTATTTCTTAAGAAATTGGGTGTTTCAGA
GTCTGAAATAACCATTTTAACTTGTTCTTAAGCCATCAAAGCCTTGTTCT
TATAAAGTAACCTGTATCGACAGAACAAGTAAAATGATTCTGTTAGTGAT
C

Coding sequence (CDS) from alignment at scaffold_336:47398..53498-

>TCONS_00060163 ID=TCONS_00060163|Name=TCONS_00060163|organism=Clytia hemisphaerica|type=CDS|length=3636bp|location=Sequence derived from alignment at scaffold_336:47398..53498- (Clytia hemisphaerica)
GTAAAATTTCGATCAAATTCGGTAAACTACGGATGTGGTCATCTTGTTTG
TGTCACAAAGACATCCAATATGGCGATAAGAAGTATTTCTTGATTGTTGA
CGAAAACCATCACAAAAAGAAGAAAAATTTAGAAATCAGTAAGACAACAC
TCGTTCTTGATGCTACACAATATGAAAATAAAATTGACAAATGGTACAAG
AAATGTTTGAAGCGTAAAAGTTGCTAATTATTGAAGCAACAATCAATTCA
AGAGAAACATTAGCCAATGGGAACACTAAAATCATACTCGACGTTTTAAA
AATCTACAAGCAAGAAGAAAAGAAATCGAATAAAGATTCTTCAAAACACA
AAACGTGCGATTGTAAAGACTTCAAGCAACCAACGCCTAAATATCGTCAT
TTTCGGAAAGCAGCCTACGATGCATATCTTGCTTCTCTCAATCGTACTGC
TGATCCTATCTTTGGATATAAAGGCTGATGCATTGGCTAATTATGATGAT
TTACCACGTCTATCAAAGCAAAGGAACCAATGTATCCCAGTTGAAATTCC
ACAATGTAAACGTTGGTATGACCAAAGAAGACCACCAAACATTTATACAG
CTACCACAGCTGAATACCGGAATGTGAAAAGTCTTGTTTCACAGTTATCT
TTATTACCAAAAAATTATAGAGAATGTGTAAATGACGCTACATTTTTACT
GTGTGCACTTTATTCACCAGTCTGTATTAAAGGAAGTAAACCGTTGAAAC
CTTGTAGAGAGTTATGCGTTAAATGGCGAAAGAATTGTCGAAGATTGGAT
ATTTTTAGTAATGTCGCTCTTCCTGACAAGCTGAGAGATTGTAATGAATT
GCCAGAGTTTCATAATTCAATGTGTATACAACCAAGCAGTTTCATAACCA
AAGAACAAGGTAAAATTTCGATCAAATTCGGTAAACTACGGATGTGGTCA
TCTTGTTTGTGTCACAAAGACATCCAATATGGCGATAAGAAGTATTTCTT
GATTGTTGACGAAAACCATCACAAAAAGAAGAAAAATTTAGAAATCAGTA
AGACAACACTCGTTCTTGATGCTACACAATATGAAAATAAAATTGACAAA
TGGTACAAGAAATGTTTGAAGCGTAAAAGTTGCTAATTATTGAAGCAACA
ATCAATTCAAGAGAAACATTAGCCAATGGGAACACTAAAATCATACTCGA
CGTTTTAAAAATCTACAAGCAAGAAGAAAAGAAATCGAATAAAGATTCTT
CAAAACACAAAACGTGCGATTGTAAAGACTTCAAGCAACCAACGCCTAAA
TATCGTCATTTTCGGAAAGCAGCCTACGATGCATATCTTGCTTCTCTCAA
TCGTACTGCTGATCCTATCTTTGGATATAAAGGCTGATGCATTGGCTAAT
TATGATGATTTACCACGTCTATCAAAGCAAAGGAACCAATGTATCCCAGT
TGAAATTCCACAATGTAAACGTTGGTATGACCAAAGAAGACCACCAAACA
TTTATACAGCTACCACAGCTGAATACCGGAATGTGAAAAGTCTTGTTTCA
CAGTTATCTTTATTACCAAAAAATTATAGAGAATGTGTAAATGACGCTAC
ATTTTTACTGTGTGCACTTTATTCACCAGTCTGTATTAAAGGAAGTAAAC
CGTTGAAACCTTGTAGAGAGTTATGCGTTAAATGGCGAAAGAATTGTCGA
AGATTGGATATTTTTAGTAATGTCGCTCTTCCTGACAAGCTGAGAGATTG
TAATGAATTGCCAGAGTTTCATAATTCAATGTGTATACAACCAAGCAGTT
TCATAACCAAAGAACAAGGTAAAATTTCGATCAAATTCGGTAAACTACGG
ATGTGGTCATCTTGTTTGTGTCACAAAGACATCCAATATGGCGATAAGAA
GTATTTCTTGATTGTTGACGAAAACCATCACAAAAAGAAGAAAAATTTAG
AAATCAGTAAGACAACACTCGTTCTTGATGCTACACAATATGAAAATAAA
ATTGACAAATGGTACAAGAAATGTTTGAAGCGTAAAAGTTGCTAATTATT
GAAGCAACAATCAATTCAAGAGAAACATTAGCCAATGGGAACACTAAAAT
CATACTCGACGTTTTAAAAATCTACAAGCAAGAAGAAAAGAAATCGAATA
AAGATTCTTCAAAACACAAAACGTGCGATTGTAAAGACTTCAAGCAACCA
ACGCCTAAATATCGTCATTTTCGGAAAGCAGCCTACGATGCATATCTTGC
TTCTCTCAATCGTACTGCTGATCCTATCTTTGGATATAAAGGCTGATGCA
TTGGCTAATTATGATGATTTACCACGTCTATCAAAGCAAAGGAACCAATG
TATCCCAGTTGAAATTCCACAATGTAAACGTTGGTATGACCAAAGAAGAC
CACCAAACATTTATACAGCTACCACAGCTGAATACCGGAATGTGAAAAGT
CTTGTTTCACAGTTATCTTTATTACCAAAAAATTATAGAGAATGTGTAAA
TGACGCTACATTTTTACTGTGTGCACTTTATTCACCAGTCTGTATTAAAG
GAAGTAAACCGTTGAAACCTTGTAGAGAGTTATGCGTTAAATGGCGAAAG
AATTGTCGAAGATTGGATATTTTTAGTAATGTCGCTCTTCCTGACAAGCT
GAGAGATTGTAATGAATTGCCAGAGTTTCATAATTCAATGTGTATACAAC
CAAGCAGTTTCATAACCAAAGAACAAGGTAAAATTTCGATCAAATTCGGT
AAACTACGGATGTGGTCATCTTGTTTGTGTCACAAAGACATCCAATATGG
CGATAAGAAGTATTTCTTGATTGTTGACGAAAACCATCACAAAAAGAAGA
AAAATTTAGAAATCAGTAAGACAACACTCGTTCTTGATGCTACACAATAT
GAAAATAAAATTGACAAATGGTACAAGAAATGTTTGAAGCGTAAAAGTTG
CTAATTATTGAAGCAACAATCAATTCAAGAGAAACATTAGCCAATGGGAA
CACTAAAATCATACTCGACGTTTTAAAAATCTACAAGCAAGAAGAAAAGA
AATCGAATAAAGATTCTTCAAAACACAAAACGTGCGATTGTAAAGACTTC
AAGCAACCAACGCCTAAATATCGTCATTTTCGGAAAGCAGCCTACGATGC
ATATCTTGCTTCTCTCAATCGTACTGCTGATCCTATCTTTGGATATAAAG
GCTGATGCATTGGCTAATTATGATGATTTACCACGTCTATCAAAGCAAAG
GAACCAATGTATCCCAGTTGAAATTCCACAATGTAAACGTTGGTATGACC
AAAGAAGACCACCAAACATTTATACAGCTACCACAGCTGAATACCGGAAT
GTGAAAAGTCTTGTTTCACAGTTATCTTTATTACCAAAAAATTATAGAGA
ATGTGTAAATGACGCTACATTTTTACTGTGTGCACTTTATTCACCAGTCT
GTATTAAAGGAAGTAAACCGTTGAAACCTTGTAGAGAGTTATGCGTTAAA
TGGCGAAAGAATTGTCGAAGATTGGATATTTTTAGTAATGTCGCTCTTCC
TGACAAGCTGAGAGATTGTAATGAATTGCCAGAGTTTCATAATTCAATGT
GTATACAACCAAGCAGTTTCATAACCAAAGAACAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037853	XLOC_037853	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060163-protein	TCONS_00060163-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_336	supercontig	scaffold_336:47398..53498 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.139117	0	0	0	1.68536	4.4232	4.24071	1.83232	0	0.00546021	1.27683	2.50801	2.24039	3.79491	23.4734	7.57946	0	0.0921169

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR020067	Frizzled_dom
IPR018933	Netrin_module_non-TIMP
IPR001134	Netrin_domain
IPR008993	TIMP-like_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00060163 vs. Swiss-Prot (Human)
Match: SFRP3 (Secreted frizzled-related protein 3 OS=Homo sapiens GN=FRZB PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.289e-16
Identity = 62/220 (28.18%), Postives = 103/220 (46.82%), Query Frame = 1

Query:  202 CIPVEIPQCKR--WYDQRRPPNIYTATTAEYRNVKSLVSQLSLLPKNYRECVNDATFLLCALYSPVCIKG--SKPLKPCRELCVKWRKNCRRLDIFSNVALPDKLRDCNELPEFHNSMCIQPSSFITKE-----QEEKKSNKDSSKHKTCDCKDFKQPTPKYRHFRKA-AYVIEATINSRETLANGNTKIILDVLKIYKQGKISIKFGKLRMWSS--CLC 825
            C PV IP CK   W   + P +++ +T A   N    + Q   L   +  C  D  F LCA+Y+P+C      +P+KPC+ +C + R+ C  + I    + P+ L  C ELP +   +CI P + +T +      +    N   +  + C CK  +     Y  FR    YVI A +   +T  +  T ++ +V +I K   ++I    + +++S  CLC
Sbjct:   35 CEPVRIPLCKSLPWNMTKMPNHLHHSTQA---NAILAIEQFEGLLGTH--CSPDLLFFLCAMYAPICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPENL-ACEELPVYDRGVCISPEAIVTADGADFPMDSSNGNCRGASSERCKCKPIRATQKTY--FRNNYNYVIRAKVKEIKTKCHDVTAVV-EVKEILKSSLVNIPRDTVNLYTSSGCLC 245

The following BLAST results are available for this feature:

BLAST of TCONS_00060163 vs. Swiss-Prot (Human)

BLAST of TCONS_00060163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SFRP3	3.289e-16	28.18	Secreted frizzled-related protein 3 OS=Homo sapien...	[more]

You are here

TCONS_00060163 (transcript) - C. hemisphaerica