TCONS_00060245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060245
Unique NameTCONS_00060245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060245 ID=TCONS_00060245|Name=TCONS_00060245|organism=Clytia hemisphaerica|type=transcript|length=1293bp
CAGGTGTCTCATAAATGGTgggaggggttggaaaaatcttcaaattttaa
caaaCGTCTAAataaccccaaaataaggtaattaaAGATGTCAAAATGTC
GTGTATCCTAAGAAAACCTCGCCCACAAAATACTTACTAAAGAAATAGCC
GGCTACCGAAGGTTTCCTTCTTGCAGGTGGATTCGTTGTTGCTTCAAGTA
CTGATTTCTCgcattgtttttcaattttagcgaGTGCGTCAAAAATGAAA
GAGTGTGCTTGGTCTAGACTCATTCTTTTATTGTAATCATAACAAAGCAG
ACTTTTGATTACATTGTTTGCAATATCTTGTTCTATTGTCTCTTTCAATC
CCTCGAAACTTGGTTCAATGTTTTTCTCAGAACGATGCATAGCAAGTCCA
AGGCCAACTTCTTTCCCATGATGCTCCACAAATGCACCATAATAATAAGA
TTCACCTTGAtaagttaaatatttccttgTCAAAATAGCATAGAATATCA
CCCCAAGCGAGAAAATGTCAGCCTTTTCTGTATATTTTCGATCAAAGACT
TCAGGAGCAATCCAATACATGGTACCTGCATATTTATCCATAAATTTTTC
TTCGTACTCTGAAAGGCtatcttcgttattttttaaatctcgCGTTAAAA
AGGCTCTGGAGATACCAAAATCTGCCAGCTTCATCTGCCCTTTATCTCCA
AGCAGTACGTTTTCAGGTTTGAGGTCTCGATGAACAAAATTATTGTAATG
GAGGTAAGCCATTGCTTCCAATAATTGTGACATCCAGTCAAACTTTTGTT
TCATATTGACAGGGTCACGTAATCGGGTATTCAAGTTTCCGCCAGGACAA
AACTCAATTACAAGGAGCGCTGCTATTCCTTCAAAATCGTAAGAATATAA
TTGCACAATGTTTGGGTGTCTTAAATTTATCatagaaaaaatttcattac
cGATAAGATCTTGAATCAATTTAGCTTGTTCATTACTATAGCTTGGCATT
CTACACGAAATTCTCTTTAAAGCAAACGCTTTCCCTCTTTCATCTTCAAC
TTTATAAACATCTCCAAAACTACCTTTCCCCAGCTTTTGGACAACAACCA
AATCTTGAACGGTACCATTTCTACCatcatgaatttgaaaagtcatCTGT
GAATTTCTTTGAGTGCTGCCATAAGAAGATGATGTACCCTGGCCATTCAC
AAGGCTTTGTCTTGCACTGGCCATATCATTAGGTATATCCTGtgtatctt
ttttctttttaggcattcatctactagaagaaaaaaaatgggt
Run BLAST on NCBI

transcript from alignment at scaffold_339:233173..238443+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060245 ID=TCONS_00060245|Name=TCONS_00060245|organism=Clytia hemisphaerica|type=transcript|length=5271bp|location=Sequence derived from alignment at scaffold_339:233173..238443+ (Clytia hemisphaerica)
CAGGTGTCTCATAAATGGTgggaggggttggaaaaatcttcaaattttaa caaaCGTCTAAataaccccaaaataaggtaattaaAGATGTCAAAATGTC GTGTATCCTAAGAAAACCTCGCCCACAAAATACTTACTAAAGAAATAGCC GGCTACCGAAGGTTTCCTTCTTGCAGGTGGATTCGTTGTTGCTTCAAGTA CTGATTTCTCgcattgtttttcaattttagcgaGTGCGTCAAAAATGAAA GAGTGTGCTTGGTCTAGACTCATTCTTTTATTGTAATCATAACAAAGCAG ACTTTTGATTACATTGTTTGCAATATCTTGTTCTATTGTCTCTTTCAATC CCTCGAAACTTGGTTCAATGTTTTTCTCAGAACGATGCATAGCAAGTCCA AGGCCAACTTCTTTCCCATGATGCTCCACAAATGCACCATAATAATAAGA TTCACCTTGAtaagttaaatatttccttgTCAAAATAGCATAGAATATCA CCCCAAGCGAGAAAATGTCAGCCTTTTCTGTATATTTTCGATCAAAGACT TCAGGAGCAATCCAATACATGGTACCTGCATATTTGTCCATAAACATGTC TTCGTATTCTGAAAGGTAatcttcgttatttttcaaATCTCGCGTTAAAA ACGGTCGAGCAAGTccaaaatcagccatttttgcCTGCCCTCTATTACCA AGCAGCACATTTTCAGGTTTGAAGTTTCTGTGAACAAAATTATTGTTATG GAGGTAAGTCATTGCTTCCAGTAATTGTGACATCCAGTCAAACTTTTGTT TCATATTGACAGGGTCACGTAATCGGTTATTCAAGTTTCCTCCAGGACAA AACTCCATAACTAGTAATGTAGATGTACTTTCAAAATCGAAAGCATACAA TTGAACAATATGAGGGTGTTTTAAGCAGGACATGGTATATAGCAAATTAC CAACAACATCCTGATAAAGTTTATCATTCGAGGCGCTATTGTTTTTTGTA TTTAAATAATGTTCAGGGGTCATTTTCCTTAAAGCGAAAACATGTTTTCT TGCATCCTCCACTTTGTAAACATCTCCAAATGCACCCTTGTCGAGTTTAC TGACGATGGTCAATTCCTGAAAACATCCACTTTTGCAGTCCAAGATTTGG AAAGACATTTTTTAATTGTTCCAATTTGATTATGAGGTCCATTTAACTCA TTCATAATACATCCATAAAttcatatttgtttttttattacttATTCAAT CTGAAAGTGATAAGAGaaactttattagaaaaacGATCAAGAATACGAAT TTGTATTGACAAAATATGGGGAAcagaataagaaaaaaagtacaGCAAAG TTTAGCTGAGAGTCTGGGCCTTCAtcgtttatataaaaaaatttcgacGT GTGTATGTACCGGACTAAACAGAAAAACAGAGAAAAGCCAGTACTAGGCC GAGTATTTATGAAAATACAGGATCCTAgcgcagaattctattggctatta aacaattgttgaaatcacgtgatataattgttttgattggaaatgCGCAA TTTTGAGTGGCTAACAAATTCGAAATGGAACATATAAATACCATAATACT CTCACTGAGTAGCTTCTCATGGGATATTTATTTGGATGGTGTAAGTTTTG GTTAGAGAGCATGAATCTCCAGACTAGGCCAAGTCATTTAAATTGATTTC AATATTCAGTTATCTCGTATAAAGTAAGCATAAGACTGAAAAAAATAATG GTCAGCTATCTGGTAATAATTTAATCtataaaaattacaattatAAAAAG CGttatgaaaaatatatcaattGTAAAAAAATTGCGTACTAAGGTACGGA AGCCCATTAGTGCCATTTAGATTATcctttaattttttaacgacGAAACT AAAAAAGATGACgacgaaactgaaaaaaaatgacgacgaaactaaaaaat tgacgacgaaaatgaaaaattgacgacgaaaatgaaaaaaaattgttact tCGTCGAACAAATTGCTTCTTGTGAATGAGATGCTGGCGATGATGAACCA GAATAAGGATGTGATGGTGGAGATTTTTGGAACCACCGGTGTCATTGGAA TCATTGGAACTAattaatgatgaaatcaatagtgcaaatgatgaaatcaa tggttgGTTCTATCACCCACACAATGGATTCCATCATCTCATCATGCTAC AGCTTTGATGgtgcaaatgatggaatcaaaggtgcaaatgatggaatcaa tggtgcaaatgatggaatcaatggtgcaaatgatggaatcaatagtgcaa atgatggaatcaatggtgcaaatgatggaatcaatggagcAGATTATGGA ATAAAAGCTGTAGCATGATGAGATGATGGAATCCATTGTGCGGGTGAAAG AATcaaccattgatttcatcatttgcACTattcatttcatcattgattag tTCAAATGATTCCATTGACACCGGTGATTCCAAAAATCTTCTGATTCATC ATTGCCAGCATCTTATTCACGGGCTTCTTCACCAGGATTGCattaaggac atgttttttttgactgtaccaaaatcaggttttcgaaaatcgtgaaaatc actttattttaattatttcgtcattcgcatgatgaattttcccaaaattt tgatatgtattgatatttgggaagggctttaaaatgagctatttgaaatc tcaaaattcggagtatttcaggattaattaatcataGAGTGTTTTGGATC ATATCTCACTCCATGACTCATTATTCGGTCCTGAGGAGGTTTCTATGCAT TCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNgtaatttttttaaaggccggagtgagttat gatcaaaacaaacaaaggacttttttaatcatttttcactcattttaaca ATTCCCGTTTTCTTTAGTTCATTCCTTTcttatcaaccaaacaaaaatct caaatcacttccccgatagatagacttgtcaggaaaatatatacgattag aattagcacctagatttcaaaaatgatcaatttgatcccNCAATATTTTA AATTATCtatgtagcaagatggtggaCTAAGGTGTAAAAGTACAGACGAA AGATTCCACAAAAAATTGGCTCcatcaaattcaacaatttatcatttaaa aagTAAAGATGACGAAAAACAACTAAGCAATTTTCAAGCGGTTGGTTCAG AGCATCAATGATAAAGTTAGGAGGGCTTTCTTACTGGAATTCACGAAGAG AAGCTGAATACAAACAAACGAAAGAAGTAAAACTAAAGAAACACATTTAT CAGCCTTCCATTTTGGCTTCTATGAAAGCCCTTCAAATTGTTTAATCTGA TATGGTCCACAACAAATAAAAATGGAGCCCTTAACTTACATAGtacttat atatttttaataagCAACCCCAATTTTCGGCTCAAGGCTAAGGTTGCTTA GAATTCTATctcaatttcaaagaaattagCTTTGACCATCCATTATATTA TACCATAATTATACCGTTTGTCATGGTTAGTTGATCTAAATATAGTTTTT ACTTCAGGAGATAGTAAAGAAATTTGCTGATTTCAGGGCTCGAGGCGTAT AATGTGTGTGACTCGAAAGAATTGTgtaatttaaaagaaatttcattttt tataaataagaaaataaagataacACAAAATTCTCACTGAACCAAATATT TCTTCTCCTCATTCCTTTCATCCTCGTTTTTCGttcctgaaaaagaaaat caaattctttATAAATAGGAAGGAAGTAGGGTAAGTAGGTAGGTATTTCA CACATAGAAATTGTAAAGGTAAAGAATCGAAGTTTTCGATGAAGAGATtt agaagtaaaaaaaactctGCAAAAAGGTCTGAAAATCGaccagatttcaa aaaatgtttgctGTTCAACTTGTCTTTATAACAAATCTCACCAAGAAAGG TACAACAGCAGGATTTTTTGTCAGCCTGCCCATCTTGGAAAGGAGCTTCA GTATACAACGAAGAGGTTCTTGAATGAGAAGATTTCATGGATATGGCATC TTCTTGTAAATAGTGCTTTGCATCTTCAAGAACTTTCTGCGCTCGGTTAA GACTTATTCTTTCTTCTTCACGAAAACATAACATTTCAGTCACCATGCCA ACAACCAACTTCTCCGCCTCACTTTTCAATCCGTCAAAGGAAGGCAGGCG TGTTTTCTCAGAACGATGCATAGCAAGACCAAGGCCAACTTCTTTCCCAC GATGATTCACAAATGCACCATAATAAGATTCACCTTGAtaagttaaatat ttccttgTCAAAATAGCATAGAATATCACCCCAAGCGAGAAAATGTCAGC CTTTTCTGTATATTTTCGATCAAAGACTTCAGGAGCGATCCAATACATGG TACCTGCATATTTATCCATAAATTTTTCTTCGTACTCTGAAAGGCtatct tcgttattttttaaatctcgCGTTAAAAAGGCTCTGGAGATACCAAAATC TGCCAGCTTCATCTGCCCTTTATCTCCAAGCAGTACGTTTTCAGGTTTGA GGTCTCGATGAACAAAATTATTGTAATGGAGGTAAGCCATTGCTTCCAAT AATTGTGACATCCAGTCAAACTTTTGTTTCATATTGACAGGGTCACGTAA TCGGGTATTCAAGTTTCCGCCAGGACAAAACTCAATTACAAGGAGCGCTG CTATTCCTTCAAAATCGTAAGAATATAATTGCACAATGTTTGGGTGTCTT AAATTTATCatagaaaaaatttcattaccGATAAGATCTTGAATCAATTT AGCTTGTTCATTACTATAGCTTGGCATTCTACACGAAATTCTCTTTAAAG CAAACGCTTTCCCTCTTTCATCTTCAACTTTATAAACATCTCCAAAACTA CCTTTCCCCAGCTTTTGGACAACAACCAAATCTTGAACGGTACCATTTCT ACCatcatgaatttgaaaagtcatCTGTGAATTTCTTTGAGTGCTGCCAT AAGAAGATGATGTACCCTGGCCATTCACAAGGCTTTGTCTTGCACTGGCC ATATCATTAGGTATATCCTGtgtatcttttttctttttaggcattcatct actagaagaaaaaaaatgggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037897XLOC_037897Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060245-exon-scaffold_339-1491911889:233173..233740TCONS_00060245-exon-scaffold_339-1491911889:233173..233740Clytia hemisphaericaexon
TCONS_00060245-exon-scaffold_339-1510915933:233173..233740TCONS_00060245-exon-scaffold_339-1510915933:233173..233740Clytia hemisphaericaexon
TCONS_00060245-exon-scaffold_339-1575043694:233173..233740TCONS_00060245-exon-scaffold_339-1575043694:233173..233740Clytia hemisphaericaexon
TCONS_00060245-exon-scaffold_339-1491911889:237719..238443TCONS_00060245-exon-scaffold_339-1491911889:237719..238443Clytia hemisphaericaexon
TCONS_00060245-exon-scaffold_339-1510915933:237719..238443TCONS_00060245-exon-scaffold_339-1510915933:237719..238443Clytia hemisphaericaexon
TCONS_00060245-exon-scaffold_339-1575043694:237719..238443TCONS_00060245-exon-scaffold_339-1575043694:237719..238443Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:233173..238443 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.276682 tpm) - - (8.96065 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.87086 4.32176 0.276682 0.39214 1.92608 1.93545 2.32918 1.48248 2.54398 2.0626 3.58327 1.83492 5.92845 3.577 6.47189 8.96065 2.88954 4.53031 5.31231 5.92124 2.40245 2.70798 4.44934 6.77529 3.03098 1.3228 3.49607 4.02686 3.4868 5.34662
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
100200300400500600700800900100011001200Expect = 1.38e-28 / Id = 29.86SequencePDK1L
Match NameE-valueIdentityDescription
PDK1L1.380e-2829.86Serine/threonine-protein kinase PDIK1L OS=Homo sap... [more]
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