TCONS_00060342 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060342
Unique NameTCONS_00060342
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060342 ID=TCONS_00060342|Name=TCONS_00060342|organism=Clytia hemisphaerica|type=transcript|length=328bp
ATTATTTCTGAATCGACTCACAAAATGACACATCatgttgaaaatcaaaa
cattcaaaatgaaaacagtATTGTTGGTGGCATCTTATTAAGAAAACCAA
AAATGGACTTATTCACACAATCGTCACAAAAGTCGCACATCTCAGAGAAT
TTAAGATCAGAAAACGCTCTACATCAGGAGGAAAATACTAAAAACTCGAC
ACGTAAGCAAGTTATTATTTGTAGTGATAGTCTCTTAAACAACATAGAAG
GAAATGGTATCTCCAACAAAAAAACCAAGTCCATCGTGAGAAACTTTCCT
GGTGCAGACTCGCAAGATATGATTAGNN
Run BLAST on NCBI

protein sequence of TCONS_00060342-protein

>TCONS_00060342-protein ID=TCONS_00060342-protein|Name=TCONS_00060342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
IISESTHKMTHHVENQNIQNENSIVGGILLRKPKMDLFTQSSQKSHISEN
LRSENALHQEENTKNSTRKQVIICSDSLLNNIEGNGISNKKTKSIVRNFP
GADSQDMIX
Run BLAST on NCBI

transcript from alignment at scaffold_340:92773..93100

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060342 ID=TCONS_00060342|Name=TCONS_00060342|organism=Clytia hemisphaerica|type=transcript|length=328bp|location=Sequence derived from alignment at scaffold_340:92773..93100 (Clytia hemisphaerica)
NNCTAATCATATCTTGCGAGTCTGCACCAGGAAAGTTTCTCACGATGGAC
TTGGTTTTTTTGTTGGAGATACCATTTCCTTCTATGTTGTTTAAGAGACT
ATCACTACAAATAATAACTTGCTTACGTGTCGAGTTTTTAGTATTTTCCT
CCTGATGTAGAGCGTTTTCTGATCTTAAATTCTCTGAGATGTGCGACTTT
TGTGACGATTGTGTGAATAAGTCCATTTTTGGTTTTCTTAATAAGATGCC
ACCAACAATactgttttcattttgaatgttttgattttcaacatGATGTG
TCATTTTGTGAGTCGATTCAGAAATAAT

Coding sequence (CDS) from alignment at scaffold_340:92773..93100

>TCONS_00060342 ID=TCONS_00060342|Name=TCONS_00060342|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_340:92773..93100 (Clytia hemisphaerica)
NCTAATCATATCTTGCGAGTCTGCACCAGGAAAGTTTCTCACGATGGACT
TGGTTTTTTTGTTGGAGATACCATTTCCTTCTATGTTGTTTAAGAGACTA
TCACTACAAATAATAACTTGCTTACGTGTCGAGTTTTTAGTATTTTCCTC
CTGATGTAGAGCGTTTTCTGATCTTAAATTCTCTGAGATGTGCGACTTTT
GTGACGATTGTGTGAATAAGTCCATTTTTGGTTTTCTTAATAAGATGCCA
CCAACAATactgttttcattttgaatgttttgattttcaacatGATGTGT
CATTTTGTGAGTCGATTCAGAAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037965XLOC_037965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060342-exon-scaffold_340-1491911889:92773..93100TCONS_00060342-exon-scaffold_340-1491911889:92773..93100Clytia hemisphaericaexon
TCONS_00060342-exon-scaffold_340-1510915933:92773..93100TCONS_00060342-exon-scaffold_340-1510915933:92773..93100Clytia hemisphaericaexon
TCONS_00060342-exon-scaffold_340-1575043694:92773..93100TCONS_00060342-exon-scaffold_340-1575043694:92773..93100Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060342-proteinTCONS_00060342-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:92773..93100 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.678683	0.581428	0.675094	0.330237	24.1802	27.7893	5.57118	8.01478	4.63167	7.27757	5.47364	4.73759	0.425332	0.205906	0.67713	0.389181	0.223798	0.976474	0.633816	0.331622	1.31709	0.421779	0.744467	0.359689	0.320078	0.571324	0.867606	0.872526	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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