|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060343 ID=TCONS_00060343|Name=TCONS_00060343|organism=Clytia hemisphaerica|type=transcript|length=1251bp
GGAGAATGACACAGCGAAGCTTCGGGTCGTCATGGCGGATAAAGATATCA
ATGAGCGCAACAGGATTAGTGACATTCTTGGTGTATCAATTCTAATCTGC
CTCTTTCACGCACTTAAAGCGTTTAAGCGTGAGATGACAACACTTTCACT
TCAAGCGTCCACCAAAGAAGAGGCAAAGTCTTTCTTTGAGAGCATGTGTT
ATGCCCAGAACGAGAAGGATTTTGTCGActtggaaaataaatttttggat
TTAGGGTGTCCATCTCTTACAGAGTACTATGAGAAAAATTGGCGTCCTAT
ATCGAACGAATGGGTAAAGTGCTTTAAAGCCAAATCAGGGGACTTTTTTA
TTTCGACCAACAATCGGCTTGAAAGCTTTAACAGCAAGTTGAAATCACTG
CTAGGCCATCGGAGCAGCCTGAATTAATTTGTCCGTGGCTTTTTTACCGT
GCTGTCTGCAATACGATCTGAAAGAGATTAAGCCGCTGCTGACGAATTCC
TCAAGTCAAAGACTTTTGTTCCAGAAAACACGACCGTCGCTGCTATCCGA
AGTCATCTGACTTCGTATGCTGCGGACTTTGTGTGTCAAGAGCTCACTGC
TGTGTCGAAGACTGTTGTTCGTAACAGTACAAATACATCCTGTGATTGTT
GCTTTCATCAGTCAATGCGCCTGCCTTGTCGTCACATTTTCCTGACTCGA
TCGTCAGCAGGGCTTTCGATCTATGACCAATGTTTGTCTGACGATCGTTG
gtcaaagtctttttttcacGACAGCTATTATTCATTTACACTATTATTTT
CTCAACCCTATATTCCACCAGTTGGAATTAAAACTGTATCTTCGTGTCGC
CCCACCAAAGCCTTCAACCACGTAGAAAGGTATAGGGATGCAGCAGCCTT
GTGCAAAAACCTTTCTTCGTTGGCTTCAGAGGCTGGTGGCAGCACATTTA
TTGAAAGAATGCAAGTCCTCAAGACTCTCGAAACCATATGGAGGAATGGT
CAAGAGGCCTGTATCCTTTACTCTAGTGATCGATCGAGCCCAAAAGAACC
GAGCATATCTGAAGAAGATCAATCAGACAAATTAACTGCCGTAATCGAAC
CGAACGAAGCAGTTATCGAACCGAACGAGGCAGTTATCGAACCGAACGAA
ACAGTTATCGAACCGAACGAAACAATTATCGAACCGAACGAAGCAGTTAT
CGAACCAAACGAAGCAGTTATCAAACCGAACGAAACAGTTATCGAACCGA
A Run BLAST on NCBI protein sequence of TCONS_00060343-protein >TCONS_00060343-protein ID=TCONS_00060343-protein|Name=TCONS_00060343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MRLPCRHIFLTRSSAGLSIYDQCLSDDRWSKSFFHDSYYSFTLLFSQPYI
PPVGIKTVSSCRPTKAFNHVERYRDAAALCKNLSSLASEAGGSTFIERMQ
VLKTLETIWRNGQEACILYSSDRSSPKEPSISEEDQSDKLTAVIEPNEAV
IEPNEAVIEPNETVIEPNETIIEPNEAVIEPNEAVIKPNETVIEP Run BLAST on NCBI transcript from alignment at scaffold_340:118273..119523 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060343 ID=TCONS_00060343|Name=TCONS_00060343|organism=Clytia hemisphaerica|type=transcript|length=1251bp|location=Sequence derived from alignment at scaffold_340:118273..119523 (Clytia hemisphaerica)
TTCGGTTCGATAACTGTTTCGTTCGGTTTGATAACTGCTTCGTTTGGTTC
GATAACTGCTTCGTTCGGTTCGATAATTGTTTCGTTCGGTTCGATAACTG
TTTCGTTCGGTTCGATAACTGCCTCGTTCGGTTCGATAACTGCTTCGTTC
GGTTCGATTACGGCAGTTAATTTGTCTGATTGATCTTCTTCAGATATGCT
CGGTTCTTTTGGGCTCGATCGATCACTAGAGTAAAGGATACAGGCCTCTT
GACCATTCCTCCATATGGTTTCGAGAGTCTTGAGGACTTGCATTCTTTCA
ATAAATGTGCTGCCACCAGCCTCTGAAGCCAACGAAGAAAGGTTTTTGCA
CAAGGCTGCTGCATCCCTATACCTTTCTACGTGGTTGAAGGCTTTGGTGG
GGCGACACGAAGATACAGTTTTAATTCCAACTGGTGGAATATAGGGTTGA
GAAAATAATAGTGTAAATGAATAATAGCTGTCgtgaaaaaaagactttga
cCAACGATCGTCAGACAAACATTGGTCATAGATCGAAAGCCCTGCTGACG
ATCGAGTCAGGAAAATGTGACGACAAGGCAGGCGCATTGACTGATGAAAG
CAACAATCACAGGATGTATTTGTACTGTTACGAACAACAGTCTTCGACAC
AGCAGTGAGCTCTTGACACACAAAGTCCGCAGCATACGAAGTCAGATGAC
TTCGGATAGCAGCGACGGTCGTGTTTTCTGGAACAAAAGTCTTTGACTTG
AGGAATTCGTCAGCAGCGGCTTAATCTCTTTCAGATCGTATTGCAGACAG
CACGGTAAAAAAGCCACGGACAAATTAATTCAGGCTGCTCCGATGGCCTA
GCAGTGATTTCAACTTGCTGTTAAAGCTTTCAAGCCGATTGTTGGTCGAA
ATAAAAAAGTCCCCTGATTTGGCTTTAAAGCACTTTACCCATTCGTTCGA
TATAGGACGCCAATTTTTCTCATAGTACTCTGTAAGAGATGGACACCCTA
AatccaaaaatttattttccaagTCGACAAAATCCTTCTCGTTCTGGGCA
TAACACATGCTCTCAAAGAAAGACTTTGCCTCTTCTTTGGTGGACGCTTG
AAGTGAAAGTGTTGTCATCTCACGCTTAAACGCTTTAAGTGCGTGAAAGA
GGCAGATTAGAATTGATACACCAAGAATGTCACTAATCCTGTTGCGCTCA
TTGATATCTTTATCCGCCATGACGACCCGAAGCTTCGCTGTGTCATTCTC
C Coding sequence (CDS) from alignment at scaffold_340:118273..119523 >TCONS_00060343 ID=TCONS_00060343|Name=TCONS_00060343|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_340:118273..119523 (Clytia hemisphaerica)
CGGTTCGATAACTGTTTCGTTCGGTTTGATAACTGCTTCGTTTGGTTCGA
TAACTGCTTCGTTCGGTTCGATAATTGTTTCGTTCGGTTCGATAACTGTT
TCGTTCGGTTCGATAACTGCCTCGTTCGGTTCGATAACTGCTTCGTTCGG
TTCGATTACGGCAGTTAATTTGTCTGATTGATCTTCTTCAGATATGCTCG
GTTCTTTTGGGCTCGATCGATCACTAGAGTAAAGGATACAGGCCTCTTGA
CCATTCCTCCATATGGTTTCGAGAGTCTTGAGGACTTGCATTCTTTCAAT
AAATGTGCTGCCACCAGCCTCTGAAGCCAACGAAGAAAGGTTTTTGCACA
AGGCTGCTGCATCCCTATACCTTTCTACGTGGTTGAAGGCTTTGGTGGGG
CGACACGAAGATACAGTTTTAATTCCAACTGGTGGAATATAGGGTTGAGA
AAATAATAGTGTAAATGAATAATAGCTGTCgtgaaaaaaagactttgacC
AACGATCGTCAGACAAACATTGGTCATAGATCGAAAGCCCTGCTGACGAT
CGAGTCAGGAAAATGTGACGACAAGGCAGGCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060343-exon-scaffold_340-1491911889:118273..119523 | TCONS_00060343-exon-scaffold_340-1491911889:118273..119523 | Clytia hemisphaerica | exon |
| TCONS_00060343-exon-scaffold_340-1510915933:118273..119523 | TCONS_00060343-exon-scaffold_340-1510915933:118273..119523 | Clytia hemisphaerica | exon |
| TCONS_00060343-exon-scaffold_340-1575043694:118273..119523 | TCONS_00060343-exon-scaffold_340-1575043694:118273..119523 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_340 | supercontig | scaffold_340:118273..119523 . |
Blast
The following BLAST results are available for this feature:
|
