TCONS_00060345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060345
Unique NameTCONS_00060345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060345 ID=TCONS_00060345|Name=TCONS_00060345|organism=Clytia hemisphaerica|type=transcript|length=357bp
TCTNTAATCAACCTTCGTATCGTTATTTCACAATTTGACCTCTAGCATGT
TCCGTCAATTCGATGCTATTTGTTCAACCATTTTCCTTGATGTTCCCGAT
GCGTGTATTAATTCAGACCAGTTATTTATATTGACTACATGATTACAAGT
AAAACGGGTTATGAATAATTTACATTCAACAAATAAACCTAAACGTTATC
AATTCACAGCAGTTATATATTGACTACATGAATGCTGTATTTCTATCTAC
AACATATTACGAATAGGTTAGATTCAACAAAACCTAAACGTTATAAATGT
TGTTGACTTCGGATATACACAAAGATGCTGATACAATGATGCTTATTTCC
CTGATAN
Run BLAST on NCBI

transcript from alignment at scaffold_340:144552..144908

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060345 ID=TCONS_00060345|Name=TCONS_00060345|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at scaffold_340:144552..144908 (Clytia hemisphaerica)
NTATCAGGGAAATAAGCATCATTGTATCAGCATCTTTGTGTATATCCGAA
GTCAACAACATTTATAACGTTTAGGTTTTGTTGAATCTAACCTATTCGTA
ATATGTTGTAGATAGAAATACAGCATTCATGTAGTCAATATATAACTGCT
GTGAATTGATAACGTTTAGGTTTATTTGTTGAATGTAAATTATTCATAAC
CCGTTTTACTTGTAATCATGTAGTCAATATAAATAACTGGTCTGAATTAA
TACACGCATCGGGAACATCAAGGAAAATGGTTGAACAAATAGCATCGAAT
TGACGGAACATGCTAGAGGTCAAATTGTGAAATAACGATACGAAGGTTGA
TTANAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037968XLOC_037968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060345-exon-scaffold_340-1491911889:144552..144908TCONS_00060345-exon-scaffold_340-1491911889:144552..144908Clytia hemisphaericaexon
TCONS_00060345-exon-scaffold_340-1510915933:144552..144908TCONS_00060345-exon-scaffold_340-1510915933:144552..144908Clytia hemisphaericaexon
TCONS_00060345-exon-scaffold_340-1575043694:144552..144908TCONS_00060345-exon-scaffold_340-1575043694:144552..144908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:144552..144908 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.271417	0	3.78408	1.0218	1.86166	2.39054	0.606008	1.13302	0.242863	0.651004	0.385812	1.33046	0	0	0	0.842532	0	0.39173	2.70349	2.7906	0.635511	0.348045	0.257371	0.271054	1.30581	2.96406	1.53362	2.19728
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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