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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060614 ID=TCONS_00060614|Name=TCONS_00060614|organism=Clytia hemisphaerica|type=transcript|length=1066bp
cagtattGTAACGAAGAAACATACGGTGATTCAAACCCATTGGTCATTAA
AGATAAGAAGAAACTAAAGATTCGCAAAGCTACCTCCACAACACCAGTTC
TTCAGTGGCCTGAATTGCACATTTATCGGTTGGACGTCAAAGCTGGGGAG
TATCGGCTAGGCGATATATTCATATTGCCGAAAGTGGATAACACAATAAC
TGGCAATTATGTCCTTAGCCCAGTCAACCCCAGCGATACCGATATATTCA
AAGTACCAATCTCTTACGAAAGGTTCTGGATGAAGTTTAATCAAGCATTT
TGGAGGCCAACTTGCCCCGCTGGGTATGCTCGATTTGGAATCTTAGCTAC
GGTACAGGATAAAAAGCCTGTTGACGGTGACATCTATTGTGTCAATGAGG
AGTATGCTTTGAAAGGTTCAATGGTATGGGAACTTATTTGGAAATGGGAC
CGTGATGCTTACAACAGAGCAGTGATTTTTAAAGGAAAGTCTGGACAGCC
CGACAAAACAGTGGATTTGATCACAGTTTTGGTAGCCCCGAAGAATACCT
ATCAAAGTCCATCGCAAAATTACCACTTTTTGTCGAAAGAATTTATTGTT
GAGGAAAATTAAAACATACATAATATTAACCCATCGGGCAGATCACACAG
CACTTAAATTCGAGGCCAACTTCTATAAATTGACAAAGCATCCTAATGCA
TATTCTGCGagatgttttaaaaagataccATTTGTGATACGAATATATAA
ACAGACATGTTTAATTTGAAATTCGTTAAAAACAAAGCCATTGTACGGGG
AAACTGTAACTGGTTTTAAATGAGGATTTCGAGTAGGGCGTCGGGCGGGA
GTGACTTTTAATTAACACAGAAGTGTAAAACATAGTGAATTGATTGTTAA
ACTAACAGACAATGGTATCCTGACAATaattatatataaattttagAGAC
AAAATTTCTGTTTGTAAGTAAATCATATCTGTTTTGACATGATATTTTCA
TTAATTGTGTTGTATTGTTTTACTGAAGCTACTTTAATGgaataaaattt
cgcggatttcgcggct Run BLAST on NCBI protein sequence of TCONS_00060614-protein >TCONS_00060614-protein ID=TCONS_00060614-protein|Name=TCONS_00060614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
QYCNEETYGDSNPLVIKDKKKLKIRKATSTTPVLQWPELHIYRLDVKAGE
YRLGDIFILPKVDNTITGNYVLSPVNPSDTDIFKVPISYERFWMKFNQAF
WRPTCPAGYARFGILATVQDKKPVDGDIYCVNEEYALKGSMVWELIWKWD
RDAYNRAVIFKGKSGQPDKTVDLITVLVAPKNTYQSPSQNYHFLSKEFIV
EEN Run BLAST on NCBI transcript from alignment at scaffold_346:85064..86495+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060614 ID=TCONS_00060614|Name=TCONS_00060614|organism=Clytia hemisphaerica|type=transcript|length=1432bp|location=Sequence derived from alignment at scaffold_346:85064..86495+ (Clytia hemisphaerica)
cagtattGTAACGAAGAAACATACGGTGATTCAAACCCATTGGTCATTAA
AGGTCAGTATTTTAAACCGTTTTCCGAAGATATATAAATTCACATGTATG
GTCGATTACAAAATTAGCACAAGATGATCCAAGCATCTTATTTAGGCCCG
GCGAACGGCAAATAATTTAACCCGGGAACTCCTCAAAACTCGCNTAACTG
ATTCTTGGACCAAGGAACCCGTTAAAGTGATTTTGTTTAGCCTCAATGGC
AATCTTTTTGAGTGCAagcagactacagtcattgaaatcattctgagctt
attgacatggtgatGGCAATATCGGAACAGGCGAAAACCAGCTTTGCCCT
GCCCAAAATGCACGAAGAGTTAAAAATGCTTGATATTTAGCCAATCGGAT
TTTGCTTGCTTTTTTAAGATAAGAAGAAACTAAAGATTCGCAAAGCTACC
TCCACAACACCAGTTCTTCAGTGGCCTGAATTGCACATTTATCGGTTGGA
CGTCAAAGCTGGGGAGTATCGGCTAGGCGATATATTCATATTGCCGAAAG
TGGATAACACAATAACTGGCAATTATGTCCTTAGCCCAGTCAACCCCAGC
GATACCGATATATTCAAAGTACCAATCTCTTACGAAAGGTTCTGGATGAA
GTTTAATCAAGCATTTTGGAGGCCAACTTGCCCCGCTGGGTATGCTCGAT
TTGGAATCTTAGCTACGGTACAGGATAAAAAGCCTGTTGACGGTGACATC
TATTGTGTCAATGAGGAGTATGCTTTGAAAGGTTCAATGGTATGGGAACT
TATTTGGAAATGGGACCGTGATGCTTACAACAGAGCAGTGATTTTTAAAG
GAAAGTCTGGACAGCCCGACAAAACAGTGGATTTGATCACAGTTTTGGTA
GCCCCGAAGAATACCTATCAAAGTCCATCGCAAAATTACCACTTTTTGTC
GAAAGAATTTATTGTTGAGGAAAATTAAAACATACATAATATTAACCCAT
CGGGCAGATCACACAGCACTTAAATTCGAGGCCAACTTCTATAAATTGAC
AAAGCATCCTAATGCATATTCTGCGagatgttttaaaaagataccATTTG
TGATACGAATATATAAACAGACATGTTTAATTTGAAATTCGTTAAAAACA
AAGCCATTGTACGGGGAAACTGTAACTGGTTTTAAATGAGGATTTCGAGT
AGGGCGTCGGGCGGGAGTGACTTTTAATTAACACAGAAGTGTAAAACATA
GTGAATTGATTGTTAAACTAACAGACAATGGTATCCTGACAATaattata
tataaattttagAGACAAAATTTCTGTTTGTAAGTAAATCATATCTGTTT
TGACATGATATTTTCATTAATTGTGTTGTATTGTTTTACTGAAGCTACTT
TAATGgaataaaatttcgcggatttcgcggct Coding sequence (CDS) from alignment at scaffold_346:85064..86495+ >TCONS_00060614 ID=TCONS_00060614|Name=TCONS_00060614|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_346:85064..86495+ (Clytia hemisphaerica)
cagtattGTAACGAAGAAACATACGGTGATTCAAACCCATTGGTCATTAA
AGATAAGAAGAAACTAAAGATTCGCAAAGCTACCTCCACAACACCAGTTC
TTCAGTGGCCTGAATTGCACATTTATCGGTTGGACGTCAAAGCTGGGGAG
TATCGGCTAGGCGATATATTCATATTGCCGAAAGTGGATAACACAATAAC
TGGCAATTATGTCCTTAGCCCAGTCAACCCCAGCGATACCGATATATTCA
AAGTACCAATCTCTTACGAAAGGTTCTGGATGAAGTTTAATCAAGCATTT
TGGAGGCCAACTTGCCCCGCTGGGTATGCTCGATTTGGAATCTTAGCTAC
GGTACAGGATAAAAAGCCTGTTGACGGTGACATCTATTGTGTCAATGAGG
AGTATGCTTTGAAAGGTTCAATGGTATGGGAACTTATTTGGAAATGGGAC
CGTGATGCTTACAACAGAGCAGTGATTTTTAAAGGAAAGTCTGGACAGCC
CGACAAAACAGTGGATTTGATCACAGTTTTGGTAGCCCCGAAGAATACCT
ATCAAAGTCCATCGCAAAATTACCACTTTTTGTCGAAAGAATTTATTGTT
GAGGAAAATTAAcagtattGTAACGAAGAAACATACGGTGATTCAAACCC
ATTGGTCATTAAAGATAAGAAGAAACTAAAGATTCGCAAAGCTACCTCCA
CAACACCAGTTCTTCAGTGGCCTGAATTGCACATTTATCGGTTGGACGTC
AAAGCTGGGGAGTATCGGCTAGGCGATATATTCATATTGCCGAAAGTGGA
TAACACAATAACTGGCAATTATGTCCTTAGCCCAGTCAACCCCAGCGATA
CCGATATATTCAAAGTACCAATCTCTTACGAAAGGTTCTGGATGAAGTTT
AATCAAGCATTTTGGAGGCCAACTTGCCCCGCTGGGTATGCTCGATTTGG
AATCTTAGCTACGGTACAGGATAAAAAGCCTGTTGACGGTGACATCTATT
GTGTCAATGAGGAGTATGCTTTGAAAGGTTCAATGGTATGGGAACTTATT
TGGAAATGGGACCGTGATGCTTACAACAGAGCAGTGATTTTTAAAGGAAA
GTCTGGACAGCCCGACAAAACAGTGGATTTGATCACAGTTTTGGTAGCCC
CGAAGAATACCTATCAAAGTCCATCGCAAAATTACCACTTTTTGTCGAAA
GAATTTATTGTTGAGGAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060614-exon-scaffold_346-1491911889:85064..85115 | TCONS_00060614-exon-scaffold_346-1491911889:85064..85115 | Clytia hemisphaerica | exon |
| TCONS_00060614-exon-scaffold_346-1510915933:85064..85115 | TCONS_00060614-exon-scaffold_346-1510915933:85064..85115 | Clytia hemisphaerica | exon |
| TCONS_00060614-exon-scaffold_346-1575043694:85064..85115 | TCONS_00060614-exon-scaffold_346-1575043694:85064..85115 | Clytia hemisphaerica | exon |
| TCONS_00060614-exon-scaffold_346-1491911889:85482..86495 | TCONS_00060614-exon-scaffold_346-1491911889:85482..86495 | Clytia hemisphaerica | exon |
| TCONS_00060614-exon-scaffold_346-1510915933:85482..86495 | TCONS_00060614-exon-scaffold_346-1510915933:85482..86495 | Clytia hemisphaerica | exon |
| TCONS_00060614-exon-scaffold_346-1575043694:85482..86495 | TCONS_00060614-exon-scaffold_346-1575043694:85482..86495 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_346 | supercontig | scaffold_346:85064..86495 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR009291 | Vps62 |
Blast
The following BLAST results are available for this feature:
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