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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060615 ID=TCONS_00060615|Name=TCONS_00060615|organism=Clytia hemisphaerica|type=transcript|length=1021bp
ATTTTAAAACGAACGGAAGTTGTGAATCCGATGATTGCTCCCCATCCTAC
GCCTCCGATATGATCCGCTCCCAATTAATCGCTGGCATACGCAACCCAAC
CCATCAATCCAAAATATTAACAGAAATCGCATCTTTGCAAACACTTGAAG
ATTTGACAACCCGTCTTCTTGCCCTTGAAGCCACAGATCGCGCATCAACC
CAATTCAGATCACCGTTCGAGAATACCCCATCCGACGTCGCATATGTCAA
ATCGTCGTCATTCAAGCCGAGAAGACCAACCGACCAAAAGAAACAATGTT
CTGGATGTGGTAAACCAATGCACCCAAACGGACGCTCTACATGCCCCGCC
TGGCAAAAAGTCTGTCATAAATGCAAGAAACCAAACCATTTCGCGAACGT
CTGTCGCAGCCCCTCATCNACAATGCTCTGGATGTGGTAAACCAATGCAC
CCAAACGGACGCTCTACATGCCCCGCCTGGCAAAAAGTCTGTCATAAATG
CAAGAAACCAAACCATTTCGCGAACGTCTGTCGCAGCCCCTCATCAACAT
TCGTCGCACCTATTAGTGAAGACCCGGAACCAACTGTCTCACATCTATCA
TCGATCAACGCCAACCCCATCTGACTATATGGTATCCCACACGGAAATTT
GACAAACGGACATTTACAAAAACAACCACCCGAACCCTCCCCAGGGCTGG
ACattgaaataaatattatatATCCCAGCCTACCGACAAATACGTaagac
cgaaaaaaaattaccGCACAGACCACAAACATTTACTACAGACGCTATCG
CAGACACACATTCTTCAATCCATCCCCGAAGAATGGTTGATACCAACAAA
ACACAAACTAAGAGGTGTTGATAATAATTCCCTACCAATCAAAGGGGTGT
TATTCGTCGATATCTCAACGAAAACAAGACAAACAAGTGAtatttttatg
gacctacctggttatgcatttaacaaatataattgatatctacgtgagca
tgaccgttaaacaatcattca Run BLAST on NCBI protein sequence of TCONS_00060615-protein >TCONS_00060615-protein ID=TCONS_00060615-protein|Name=TCONS_00060615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
FKTNGSCESDDCSPSYASDMIRSQLIAGIRNPTHQSKILTEIASLQTLED
LTTRLLALEATDRASTQFRSPFENTPSDVAYVKSSSFKPRRPTDQKKQCS
GCGKPMHPNGRSTCPAWQKVCHKCKKPNHFANVCRSPSXTMLWMW Run BLAST on NCBI transcript from alignment at scaffold_346:2365..3385 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060615 ID=TCONS_00060615|Name=TCONS_00060615|organism=Clytia hemisphaerica|type=transcript|length=1021bp|location=Sequence derived from alignment at scaffold_346:2365..3385 (Clytia hemisphaerica)
tgaatgattgtttaacggtcatgctcacgtagatatcaattatatttgtt
aaatgcataaccaggtaggtccataaaaataTCACTTGTTTGTCTTGTTT
TCGTTGAGATATCGACGAATAACACCCCTTTGATTGGTAGGGAATTATTA
TCAACACCTCTTAGTTTGTGTTTTGTTGGTATCAACCATTCTTCGGGGAT
GGATTGAAGAATGTGTGTCTGCGATAGCGTCTGTAGTAAATGTTTGTGGT
CTGTGCggtaattttttttcggtcttACGTATTTGTCGGTAGGCTGGGAT
atataatatttatttcaatGTCCAGCCCTGGGGAGGGTTCGGGTGGTTGT
TTTTGTAAATGTCCGTTTGTCAAATTTCCGTGTGGGATACCATATAGTCA
GATGGGGTTGGCGTTGATCGATGATAGATGTGAGACAGTTGGTTCCGGGT
CTTCACTAATAGGTGCGACGAATGTTGATGAGGGGCTGCGACAGACGTTC
GCGAAATGGTTTGGTTTCTTGCATTTATGACAGACTTTTTGCCAGGCGGG
GCATGTAGAGCGTCCGTTTGGGTGCATTGGTTTACCACATCCAGAGCATT
GTNGATGAGGGGCTGCGACAGACGTTCGCGAAATGGTTTGGTTTCTTGCA
TTTATGACAGACTTTTTGCCAGGCGGGGCATGTAGAGCGTCCGTTTGGGT
GCATTGGTTTACCACATCCAGAACATTGTTTCTTTTGGTCGGTTGGTCTT
CTCGGCTTGAATGACGACGATTTGACATATGCGACGTCGGATGGGGTATT
CTCGAACGGTGATCTGAATTGGGTTGATGCGCGATCTGTGGCTTCAAGGG
CAAGAAGACGGGTTGTCAAATCTTCAAGTGTTTGCAAAGATGCGATTTCT
GTTAATATTTTGGATTGATGGGTTGGGTTGCGTATGCCAGCGATTAATTG
GGAGCGGATCATATCGGAGGCGTAGGATGGGGAGCAATCATCGGATTCAC
AACTTCCGTTCGTTTTAAAAT Coding sequence (CDS) from alignment at scaffold_346:2365..3385 >TCONS_00060615 ID=TCONS_00060615|Name=TCONS_00060615|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_346:2365..3385 (Clytia hemisphaerica)
TTACCACATCCAGAGCATTGTNGATGAGGGGCTGCGACAGACGTTCGCGA
AATGGTTTGGTTTCTTGCATTTATGACAGACTTTTTGCCAGGCGGGGCAT
GTAGAGCGTCCGTTTGGGTGCATTGGTTTACCACATCCAGAACATTGTTT
CTTTTGGTCGGTTGGTCTTCTCGGCTTGAATGACGACGATTTGACATATG
CGACGTCGGATGGGGTATTCTCGAACGGTGATCTGAATTGGGTTGATGCG
CGATCTGTGGCTTCAAGGGCAAGAAGACGGGTTGTCAAATCTTCAAGTGT
TTGCAAAGATGCGATTTCTGTTAATATTTTGGATTGATGGGTTGGGTTGC
GTATGCCAGCGATTAATTGGGAGCGGATCATATCGGAGGCGTAGGATGGG
GAGCAATCATCGGATTCACAACTTCCGTTCGTTTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060615-exon-scaffold_346-1491911889:2365..3385 | TCONS_00060615-exon-scaffold_346-1491911889:2365..3385 | Clytia hemisphaerica | exon |
| TCONS_00060615-exon-scaffold_346-1510915933:2365..3385 | TCONS_00060615-exon-scaffold_346-1510915933:2365..3385 | Clytia hemisphaerica | exon |
| TCONS_00060615-exon-scaffold_346-1575043694:2365..3385 | TCONS_00060615-exon-scaffold_346-1575043694:2365..3385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_346 | supercontig | scaffold_346:2365..3385 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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