TCONS_00060633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060633
Unique NameTCONS_00060633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length914

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060633 ID=TCONS_00060633|Name=TCONS_00060633|organism=Clytia hemisphaerica|type=transcript|length=914bp
CTTCAACGCATCTGAGAAGCTAAAGAAGTTGTATGGATTCTTTGCAAGAA
CTTTTAGACAGCCCTtttttcaGCACGTTAGCGATGTCATCGGAGCAATG
TGCTCATCGTCTTCAAGAGTTGATGCGTATCCCTGGTAACAGCCAGTGTG
CTGATTGTGGAACTGAAGAACCGGAACCAAACTTTGTTTCATTGAATCTT
GGTTTATTCATTTGCATCAAATGTTCAGGCCATCACAGGGCCCTGGGAAC
GAGATTCTCCGTAACGAAATCCATATTGCTTGACACATTTGACGACGCCA
AAGTCAAGCAAATGGAAGCTGGTGGGAATATGTTAGGTGTAGAAAAATGG
CAAGTAAACGTCCCAAAATGTTGGCCAATTGTTGATAAACATTCACCAGA
TGATCTAATTGAGCAATGGATACGAGCGAAATACGAGCGACAAGAATTCA
CCGAAAATCAAGTGACTGAGGAATTAAGACCTTATTGCGTAGgTTCGAAG
TATGGTTTtctgatgaaaaaaaagaagaaggacAGTAAATGGCAACGCAG
ATTTTTCGTCTTATCCGCGGAGGAAGGATATCTCAAAATGTACATCAAAC
AAGGGGACAATGAACCTAAACACAAGATTAGCATCAGTGGAATTAATTTA
ATGATGGTTCATAGTGACGTCACCGGAGAAAAACATAGCATGCTAATCAC
TTTTCCCATCATGCAAAACAACCAATCGAAACAAAGGCATATTTATGTAT
ATGCGGACAAAAGTTTTGAGATAGTTGACTGGTATCTAACAATTCGTGGA
GCACGCCTGAAATTCTTAACACCCTATTTATACGAAGTTGAACGTCCAGT
GgtTGACTTTTTGCAATCAAGGAAATTTATCAAATCAGGATATCTACACA
AAACTGGAGGCANt
Run BLAST on NCBI

transcript from alignment at scaffold_348:149886..166890+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060633 ID=TCONS_00060633|Name=TCONS_00060633|organism=Clytia hemisphaerica|type=transcript|length=17005bp|location=Sequence derived from alignment at scaffold_348:149886..166890+ (Clytia hemisphaerica)
CTTCAACGCATCTGAGAAGCTAAAGAAGTTGTATGGATTCTTTGCAAGAA
CTTTTAGACAGCCCTGTAAGTACGTAATACTGAGTTTATGTTTGTGtatt
tttctgcgacggagacggtaaggtttataatttgagtagatcctgaccag
ctgaggacgacggtaaaacagcacttttaccgtcctcgattttgcaggtc
aaaactacgggttattccaaatcgcttcagtcactttaccgtcctcaaaa
atgcaaatacataaactcactaatAATTTGGATAGCTTCAGTTGAATTAA
CCCAGGGATATTTAGAAAACAAATCTCCGTGTATCAGTTCGGGAAGTTCC
ATAGAATCGCAGCGCTGCGGAATCCCGAAACTTTATTGTGTCAAATTCCG
CAACGTTGTTGAATTTCACCCCAAGAACGGGGTCACACGGGCGATGTTGA
TGCGTTTTATTGTAAGTGCTTGTGATAAGATAGTGAGGGATAagtggaaa
tactgaaaatcgcCCGCGCGCCTTCGATCGCATAGATATTTCTATGGAAG
TGAATTAATGATAGCAATGTTGTTAATTTTCAATTAATAGGTCAATTAAC
GTGACCGTACTTGATAACAATGTTGTGTTGTTTTGAATGTGAAGAATGTT
TGGCAAAAAGTAAATAGTTTGTTATGAAACGACAACTTTGATTGCTGAGC
TTCAAATTGAGAATATCATCGTTTAGTcagttttgatttcatcgtCAGAT
TGTTTCATTCAGCTCTGGTTCTATTTTGATACTAAATACTGAGTGTAAAA
CCATACAAAACCATTGGGTTTTTAAGATGCTATAATTTTATACGACCGAG
taaattcattaaaaagttGATCATTGAATATTGAGCATATTATTAGGATA
GGAGgaattgttttttcatttgttggatatttcaaaatgttaaaatttaa
gAGGATGCTTTCGTCCAGTGACAGAGAGAGTCCTGGGGCGAGACGAGGAG
TTCGCCGACTTTCCGATCTTGAGAGACTGAGGATTTATAGACAAAGTCAA
ACTGATGAGGTTTGCAACGAAATTCagagatttattttattttgttttat
taaCCTTTCATCTATAGCTTGAAAATTtgtcccgcgaaaatttcttccct
tgagGTATACCCCTGATTTATGTATGTATTAGATCTGCCTGTCTTAGTTA
GAGCTTTTTTCAAACCAAGAATATAGGAGATATACAGTTCTACGTAAACa
gtcagaaaaaacaaaagatataTTATCGACAGGTACTGCTCACATCCACT
GTAACGATAACGTCAAATTTCAATTGAATTGCTTAATCAGCGCGCCTTTT
ATGCTGACAGAgcagaataaacaaaatattttctaaaaatctgtGTCCAC
GCGGTGCGTTAAAGATTGAAAGTTATTCCTTCTTTTGCTAAAGACTGCTG
TGTAAAGGCCGGTCTTCACTTTCGCGCAatatgagcgaaaactttttgac
gtttttgtaaggtcattggtcggttgaaaaataaaggaattctattggtc
gaaattgacgtggTTACACTAcattaatatctttaaaatttttgaaattt
tttaatcaaaaatacattaaagaaattaactattttctttaaagtcttTT
CGAAATGTTGTATcaaatcttcaatctttttttctcaaCTTATTTTCTCA
CTCAACAAACGACATGAGTGAAAGGAGGAAGGCTGCAGCACGTATTGTGC
TAATTCTTTTGTAACGGAAATTTGAGaggaaatattcgaaaaagaaaagt
cgAGCTTAAAAGGTCTTGCTGAATACGCAAGTGGCTAAAGTTGAGGAACG
AAAAAAGTGCCTACAACAACATATTTGCTGAACTTCTTCGTCTACGTGAc
caagaagaaaagaagaattctATATCTCAAGATGAACACAGAAACTCGTG
GCTGATATCCATCcatcatgcaaaatatttctCTTATCTTATCTTTCACC
CCTATCTCATATTAGCCATACTACGGTTTAAAAATTCCAAACGCTAGAAA
ATCCATTCATCGAAAAAATGTACAGAACTATCATGTCGGTGCCTTTGATC
TCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCTAGATTATACCGCCAGGAGAGAGGaaccttataaaaagaaaaacga
gaaaaaaaaaacaatagaaaacttaggcaaaattaaacaaaaaacaagCT
AAATGAGCATTGTGAACAATCAAAACAACGGACCCTCGAATCGACCAGTA
TCTTGGATAAATTTTACGGTTATACTTATTATATCATGATTTAGGTTGTT
ACTAAAATTCGAATCCCCAAAGAGAAGTATTCTGGAGAGTATTCTTGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNaaaaaggaaaaaaggaagCACGATATCGTTCGGTT
CGACAAAAGGGTGGCACAAAAGGAGGTCTAATCCTACGTCTTCCACCAGC
ATCCTCATCTTCATCAACCTCCTCCCCCCTCTGGGGAGGAAGGATATTAG
AAAGATAAGTTGGCGCAAAGCCATTAATTATTTTATAGAAGAGAATAAGT
CTGCGGCTAAGTCGCCTGTCTGCTAGACTTTCAAGACCTAGCTCtagata
aattttttctctagaTGTTCCTCTGAAACATCCTGTTATCGCAAGACAGG
CATTGTATTGAATTGATTCGATTTTTTCAGAGAAAGTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAATGGGTAAATTGTTGAATGTAATTACTGGAGGATCTAGGTTTACC
CTCCTTGTAAAGAAGACTTCGACGGCCTATTTAGAAGGATCAGGGTTGAA
ggacatcttccattgatgagcccactCATTTATCTTCTGCAAGTCACTGT
TCAGTTCTTGAGAACAGCGAATCTGATCAAGAATCAAGGAAAACAAAGAA
GAGTCATCAGCAAATATTTTTATCAAGGAAATTATATCTTCGGGGAGATC
GTTAATATATACCAGAAAAAAGAGGGGTCCCAGAATGGAACCCTGAGGAA
CACCTGCTGAAATCGGGGTCCATTCAGAGGATTGACTATCAAGAACTACC
CTCTGTGACcttccaaatagaaaattttggatcAAAAGAAGGAGAGAGCC
AGAAACCCCATATGACTTAAGCTTGAAAAGAAGGCCTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNACGTTTGCTTTCTTCCATTTATCAGGAAAAATACAAGactcaagagaa
aattgatagATCTTCATAAGAGGCTTAACCAAGGATTCATCGCAAATTTT
TATCACCCCTATCTCATATTAGCCATACTACGGTTTAAAAATTCTAAACG
CTAGAAAATCCATTCATCGAAAAAATGTACAGAACTATCATGTCGGTGCC
TTTGATCTCGagagaagtgaagaaaaaaactttaaactcttTACCAAAAA
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttattttctt
taaaagaggaCTGTTacacttgtaaattttttaatcataaagacttgatt
aaaaaatttcagaaattttgaaataaattaatgtaatgtattcgcgcgaa
acttttttatgacgtaatcttttcttcaggcaaaaaaggttacgAAAAag
ctgtcgcccatttcgcgcaaAAGTGGAGACCAGTCTTATACAAATGAatt
gaaataatgaaataaaatgttatattaccctcttttacaaaaagtgctaa
gttttaatgggtaattttttgaattgtctgcaaaagattgaactatctaa
aaattttctttctaaattgatgtttcaaaagttataactctttttgtacg
aaaattgggatgaaaaattgctcaaaaccaatattttcaagattttgaga
caaagaagtttttacaaaaattttccgaaaatttattgttagtttggtta
aagatacaccaNattgggatgaaaaattggtcaaaaccaatattttcaag
attttgagacaaagaagtttttacaaaaattttccgaaaatttattgtta
gtttggttaaagatacaccatctagcaaaaatattttcaaaatctttctt
cttcgccgaaaataagctcctcaaagttgaaatacttgtcttcgcaaatg
tcttcattttcagattcaggaatagtttgtctaacagaaaatgtataaca
tgccatagttttgtcgGTTATCAGTCATAAAAACACATTTTATACACGac
aatatgaaaaattcacagTGGTCAAAGCccttaaggaaagaaattttcgt
ggaatttaatttcgtggttgagagaggattttttgttgaaaatatggcct
atttttcccaaaaaaggccaattttataggtgttttttttaatcatgaga
atattcgtgtttcgcggaatttaatttcgcggatttgtcgaaaaaccgcg
aaaattgaattctgcaaaaatttgttccgcgaaaatttgttcctGCGAAA
ATTTGTTCTCTTAACGTAAcctgtattttttcttttttctttagtttttc
aGCACGTTAGCGATGTCATCGGAGCAATGTGCTCATCGTCTTCAAGAGTT
GATGCGTATCCCTGGTAACAGCCAGTGTGCTGATTGTGGAACTGAAGGTT
GTCAATATTAATTATCAAATAATTGTATCAAATAATTATACCCAGCAAAT
AATTAAtgtaaattctgtaaaaatccAGGAGCCCTGGTGGACCAAATAGG
ACAACAAGAACAATTTTCATTATCTACGTTTTTAGCACTTTCCTCTCATC
ACTTAGTTTCAAATGATGTTTGTATAATGatcaaaattcattgtttaTGT
GTAAAATAACGTCATTAAAAATTGGCCCCCAGCAGCTCCCAAGGCTCTTT
TAGTCAATTGATGATATTCATAACGTAATCTTTTCtaacggaaatacccc
ggttttagccagtagtggtaaattttaactagacaaaagttgtacaAAAT
TTGCCATTACTGGCAAAAACCAGGGTCTTGTCGTATGaagcattacgtca
tgaatatcatgaattgtatcTCTCAATAACTACTAGAAGTCTATTTATTG
AGACTCAGAAAGCGAGCCGAGTCAGAAGTAAATTATTAGCCTGTATGCTT
ATGTCCTTAATCATGTTTCGTCATCGTTATTGTTTGTTCAGAACCGGAAC
CAAACTTTGTTTCATTGAATCTTGGTTTATTCATTTGCATCAAATGTTCA
GGCCATCACAGGGCCCTGGGAACGAGATTCTCCGTAACGAAATCCATATT
GCTTGACACATTTGACGACGCCAAAGTCAAGGTAGGTGTTTTAGCTTTTT
ATGGCAgtgattctcaacaacaaaattgCCTTAACAAAAAGTTCTTAAGa
tgttttgtaattttggaggattttttttttcaagagattTCTTCATGTTT
CTAGTAAGCAAGTTTTAaaacctctataacttgaaCAAGTTTTCGTGTTC
CTTCAATTAATAATGCCttattttaaacatattttaaccttggaacaata
gaatttttatccctattgagatttcaatcgaaattttcatcccaactgta
ggaaaaagtttaaccggggctgtgagacaggggtgtacgaGATGAAAGTA
TATCATTAGCCCGTTGCTCCTGCTTCAAGTGCAAGTGTCAAGTGGTAATA
CCCAATATTCCACAtatcaaaataattaaaagaccGTCGAAAAGTCCTAC
ATTACAAGGCTATCTACGCATATGTCGACTTTATTTTTCGACTTTGCGTT
TCGGGAAGCTTGTTTCTTGAAACCAAGTATTTCGAGGAGATAGCGCTTTT
CATACCTTTACTTTTACCTCTACATATACGTTGAATATTATATGGTTTTT
GATGTAGTTTAACATGCCAGACGACTAATTAAGAAAAAGTGGGGTATGAT
AAAGAAATTATATagagccacagggttggatagtggcgATCAAATCCCAG
TTCCTTCTCTTCTAGTATGCTTTCTTcaacgttgtggcagaaacgtgtca
aaggtgtggtaactttgtctagtagaaacacgtagaaagtatacttcttt
tctcattgttattttagtttcttcgaCTGGTTCCGTGGTTTTCTTTCACT
AAACACATTGTTTTACTATattttatctgtggtggtgtctaattaacact
gcttggcGCCTACttacacaaccctatttccatcatataggaggatattt
tcgtaAGAGGCCGAAATtctgtgtaggtcgaaaactgaggaacagattat
gtgttttcatgaaatatttttttgactcatattgagttatttttttccat
cttaactcatattgagttgcTTTCTTCCTTATATtcattttagatcacta
gttttgcattgatggatttctatgtcatcatattttccttttcaactccg
acctgattgattttctgtgaatgttcattctagatgtTTGTTGTGATTTG
tcttgtctttttgttttgtgggtttggTCTTtagtgtttccattttgagt
agttgaaggttttatacttctagactatatatatgaCAAAGCAATTCATT
ATACCGTAACAATTGGTAAATGGTATTATCGTATAACAACTATTATTACT
GTATTACGCGGATTATAAACGACTTCAGTCTATATTTGATATTATGTGAA
ATTCGACACACACATCACATGCATATCATATCTTGTTTACATTACGGAGA
CATATTTCCAGTTCTGTCCTGTCTTTGAATTTAAGGGATATTCGACCAAT
TGATACCGTAGCAGTGTAAGCAAAATAGACATACATATATAAACTCTTGG
ATAGAAATGGAACAGTGTGGGGTTCATTAAGGATAAGTATAAAAGCATCA
GTAGATTCAATAATTGCAAGTCCAATCGCCTCGCGATTTGTATACAATAC
GCAGTCAGCCACCAAACCAATCAAAAATTTCTTACCGAAAGTTTTGAGTG
ATGGACAGATATTTTAATCTCTAGAGGAGCAGGATTCAGACTAGAGGAGC
AGGCTTCAGAAATGACAATGGCGAAATTATTACTATCCATCCACGTATTT
GTATACATTTGTTCACTAACTGTTATCACAGTATGGCTATTTGGTAAAAA
ACACTCAACATTCAAATTAGAGTTTGGGGATCAATATGGAAATTCTGGGG
TATTCGTATCCGGTGTAGTGAATCATTATGGTCTTTTCCTATCAGGTATT
ACACTGTTGAATGTATGGACTATCATTGGATTTattgttttaattgtttt
gCTTCAGAAAACCGGTGCAGATTGCTTTAACAAACCTATCATTTTCCTGG
TACAGCAAGCTTCGTTTTTACAGCTACTTTCTTTTGTTACATTAAATTGG
ATTTTAAGCGATATAAATATTAACGATAAATACTATGACTATCAATCAGT
TGTTCTTGACTTATTCTTTAGTTGGAGAGAGACCCTAATACCATTTCTCG
GCTTTAATATGGCTCAATTATTACTAGTCCTCATATTTATAATCACCGAT
TACTACCTACACTACAAAACAGCCAACCAAAACTTACGAGGGGAGCTTTA
TATTTCTCTTGTCTGTAAAGGTTTTGTCTTCATCGTAATCAATACTATTG
TTGCGTTTTATTACCCGGAGAACATTATCACATCGTATTATGCTATCATA
TTGAGCCCAATAACATTGGGTGGTCTTGTTATCTACATACTCGCTGTGAA
AAGCGCATGGAGGTTTTCCTGCTGCTGGAGAGATAATGCATTCAACCCGG
TATTGGATGATTTTTCACTCTGGGTTTATTGTGTATTGTCTATAATTCAT
GGTGCTGGATTGACTTTTTACATTACCACGTATCTCAATATATTTGATAA
AGGTACGGATCTTTGTTCATCACAAAGAGAATGTATATTACAGGCATGGA
AGATCAATAATTCTTTAGATGATGGAGATTTACTGCTTTCTTTCGTTTTG
ATTGCTCCCTTGCTTAATGTTACACTTATACTAGCAATCGAGAGGAAATT
CCGACAACAAATTTTCTTATACTGTGTCTGGACTAGCGATGTTCTGTCTG
AATATTGTTGCAGATATCAGGGTCCTGAAAATCCAGAACAAGATCCGCTA
TTACAGAATGGGGAGCACAATCCAAGATATATGGCTGAAGGAAATATTGA
AGCTAATCAAAATAATGATCCACACGAGGATAGACATGAGAGAGGAATTG
AACCAGCGAAGCGCCCTGATCAGCCAGATTTACGGCAGCCGAGGAACATT
TTGGTAGACAAGGTTATCCCAGTACAAGAAACGAATCAAAACTCACAATT
ATATTCTGAATGCCATAATCAACTAAATCATGATTATGTACAGGGTAAAC
TCGAACCGACCACTTCAGAACACCCGCCCCTTACTGAAGAACACCCACCG
CCCACTACAGAACACCCATCGCTTACTGCAAAACACCCGCCACCCACTAC
AGAACACCCACCGCCCACGGCAGAACTTCCACCGTCCACTACAGAACACC
CACCACCCACTACAGAACACCCACCGCACACGGCAGAACTTCCAACGCCC
ATTACAGAACACCCACCGCCCACTACAAAACACCCGCCGCCCACTACAAA
ACACCCGCCGCCCAGCAACAGGGAAGAGAATTTTCATGGCTATCACACTG
TTTCTACACAAACTGAAAGCCATGAAGAAAACCAGAGAAACGATACAGGA
CAAGTTCATTCTGATATTACTGTTCGACTTTATCTTCACATTTAGTTAAA
AATGATCATCGACTTTGATCGTGCATACAAAACCACCAGATCCTGTTATT
ACTGTTGGTTATGTGTTGTAATATGTGTACCAATTTATGATAAATTCTTG
TTAAAATCTCATCTATTATATTCATAATTTGTATGAATTGTCTTAACATT
TTGGAAAGAAAGTAAAGTTGAAATTTCAAGTAGAACCTTTTAGTAAAGAA
TTTCCCAACAGAACTCTTTAAAAGCCAAATACAGTGTGTCCGTGAAACTC
CTcaagataaaaattttttaaatatgctCCGCTTTTTCTCTTGTCTGTAC
acacaatttcaaaattcattgccgtagagggtctgttgtcattgtctttt
ctcatttgagatttttcaaatcggccgctgcgatggagtgttggcgAGAG
AGGGGAGaggatgagagaagtgttgctatttattaATCATACTTTACCCA
CGTAtgggaatttttttaatcaaacagacaatgtgcacagagtgtactac
gaagcgataaacgtgagtgTATACTCTGGTACAGATTACTTTCTCTCCAG
ACACACTGTAGATTTATATGAGATTTCGACACTCCCTGGCAGCAAAGTGG
CTTTTTTACCATTAatatctttctcaaaaattctCTCTGGCAAATTTTCC
CGATTTTATCAACCCTGTGAAATCCCCTGCCGTGGCTTATTCTAGTGATT
TCTGATCCATAAGATGAATACTACTTAAACCGTTTGCACATCAAAATCAT
CCAAATATCAAAACTCATTAATAATAcagaaatttctttcattgtacctt
atcggccaaaacttagttggNGATTAATAATACAGGAATTTCTTTCATTG
TACGTTATCGACCAAAACTTAgttggccctaagtgactaaattttgactt
ggtgactaaaattagggccgactaaaaatttagaaatagccaaaacttag
ttattagtcgacccttagtgactaaaattagggccgactaataattataa
ggccgactaagttttggccgataaggtatcccTTATACACCTAACTTCAC
AGCCAAATAGGCTTACAAAACCCCATCCATCCAAAAAATtatattacatt
ttatttttctagCAAATGGAAGCTGGTGGGAATATGTTAGGTGTAGAAAA
ATGGCAAGTAAACGTCCCAAAATGTTGGCCAATTGTTGATAAACATTCAC
CAGAGTAAGTGAGATTGTATAAATTCGAATAAAAGTCCCTGATGTTTATT
TAGAtctagacggcccacttttcgccctgcctattctaattatgAATTGA
AGTTGGCAgaaagttggctgtctaaagtttatgcattgccctcttttgac
atCAATGCGATGTCTGCTTTcaacctttttcaagcaaacaTTTAACTGCC
AAATTGCTTACtttaacaattagaataggcagggcagaaagtcagTCGTC
TAAGCTTGAGCTTAATTATTTAGTTTTGAGGAGAGCTGTTTATTCGAGGG
CACGTTTAAaggaaggggcgtttattaaatcattttcaaccaaCGGCAAT
TTGAAAAGCGACAGGTACCCCACGagctacttgtttcaaataaacgagGG
GCGTTTTAAAGAATAGTAATACGGTAATTTGTTGTTTAGCTATTTGCTCA
atctgaaccaaaaaaaatgttaataGATAAAATCTTGACAAAACAAACGA
CTCATAGGGATACAGATACACTTCGGTCCTTAAATCATCAACCCTTTTAA
GGACGGGGGGGTAAATAAAACGATTGAGGAAGACCTGCAATTTGGATCCA
CAAGATCGAAGACGGTAAAAATGCGGCTTTAAAGGGATCTTTCGTCATCa
agtttttccttaaaattaaTTGTCTCACCTTCAGTGATCTAATTGAGCAA
TGGATACGAGCGAAATACGAGCGACAAGAATTCACCGAAAATCAAGTGAC
TGAGGAATTAAGACCTTATTGCGTAGGTAAGGTGGATCATTATTTCAGAT
CCTAAAATAAGACATTGTTCTCAATTGTACGGTAAAACAAGTAACCCTCT
ATTCCATATACTAAGTGCGGCTAATGTTAGTTAATTATCGGAGCCTTCTA
AATTTGCATTTTTACTTATTTTCAATGTTCGAATAACCTATTCGTTTTGA
TTGAAAACTATTTTAAGGTGTTaattttttatggattttcaggTTCGAAG
TATGGTTTtctgatgaaaaaaaagaagaaggacAGTAAATGGCAACGCAG
ATTTTTCGTCTTATCCGCGGAGGAAGGATATCTCAAAATGTACATCAAAC
AAGGGGTGAGAAAGTCTTTACTGATATAATATTTATCCCAAATCGGGATG
AAAAGATCAGTCGGTGCGCCAAAttgggcagattctcttacgaTAAGCCA
TGGTCTACAGTGTGCCATGTGTGGAGGCATTTATAGTATGCATATACTGA
AATAGGGATAGTATGTTAAAGGACATTTTGGACTCAAAATTACCAAAACC
AGCCTCTAACTCTTATATAAAATACATTACACATTATATCGGGAATAAag
aactacacgtttttttttatataaggaacacgtttataaggaactcgagg
ctcaaaatggttcaaaaaataaggaattgtttaggaactgctcatgctga
gaataagaaaacaagttttaaggaacagtaagagatggttatccaaactt
agcagctatgtaaataaggaactcgataaggaactttgaggctgaaattc
tctgtaaaaataaaaaactccaggctcagagcaaagttaaggttccttat
aaaaaaaaaaacgtgtaacttaCAGCTGCTACACGCGGTGCTTTCAATAT
TTGCtcgaatttttcgaattttcttgaaCACTTTGTGATTCTACTTATTT
GACTGTATTATACATCCCATTCATTTATTTTCCTCTTCATAGGACAATGA
ACCTAAACACAAGATTAGCATCAGTGGAATTAATTTAATGATGGTTCATA
GTGACGTCACCGGAGAAAAACATAGCATGCTAATCACTTTTCCCATCATG
CAAAACAACCAATCGAAACAAAGGCATATTTATGTATATGCGGACAAAAG
TTTTGTAAGTTAGGACCCAGATCCTTTACTTTGCTTCGTTTGACTGTTTC
AATCAGCAAACATTTTTACATAGGGTTACCATATAGTGGGTATCAAGCCC
CCCTTAAAATGGCACCCCCCTCTATTTTCCAGGTTTCAGTTTAACCCCCT
CTTTTTTCGACCTTTTACTCACAAACTCTTACAATTTCTAactataaaaa
taataattgttgagaaatttaaaaatgaatggaaaacaAAGACACTCTTT
TGTAAATTGGCAAATCTTCCtagccccccccctaaaaaattaacccccct
ctttttttgtccaagccaccccttttatttggaatttttacaagatcatg
ttcagacgttacagatgaaaatagtggagcgaagtcttttcgatctgttt
tgctttgtagcGTCTTCTATTTTGACGTTTCCActtttgacgttcacaca
gtGTTTCGGAACTGTTTAGTTTTGGAGCAAAACGGAACGTAGCGGCTGAA
CGTGGTGTttgaccactcggccatcgctcCTAATAATAACACTGTTGAGG
ATATGACTCACTGCGATGTAACAGAATTTAGACTTGCTCTCAATGAGAAA
ATAATAAAAGTAGAACATTGGGTCCCAATGACACCATGCTTCTCAAAACT
TAACTTATTTACATTGGAcatgatcaaaagttattcagCCAGCAGTAGAC
TCCAAAATTCCTTAATTAACTTTAAACAGGGTACCCAAAGAAATcctaaa
tttaaaattattattttgaagatttttaggGTTCAGTCCCTTGTAAATAG
CGCAACAACTTCACGGTGATCTTTAATCGGATTTAGCGGATTAGAAAAAT
GCTTAAATTTGGTCGTAAAGAAAGGGAGGGTATTTGATAGGGAAGTAAAA
ATTAGTTGTGCTCAAATTGTACACATATGCGCTTTATTTATTAAAAGGAT
AGGGTCGTTTTGAAAAGTTACtttgaaattattacaaaaattaaacttta
aatttcccagattttcaaaaattattctgAAGATCGCGGTGCTTCCGCAA
CTCAAAAAtagttaaaggtttttttttaataagagtgatatcctTTGCTT
ACTCCCATCAAATTTAATTCAcaagatttttggacctacctggaggtcct
ataaattaacctttgttcgtccgtccgtccgtccgtccgtctgttaccag
cttttctcgagattggttcattagttttttctgatttttggcacaaagat
gcaaaatggcaatgcccaaaatgtgacggagcccgattttcgaaaaaaaa
aattttccggccgaaaatgccggaaatatgccggaaaaaccggttttttt
gacattttctcgagatttcatcattagttttttctgattttttgcttaaa
gatgcgtattaacaatgcccaaaacatggtcaagtccgaaaatgccggaa
atatgccggaaatcaccgtttttctggattttcattagactttttccata
taattggttgttttttcattcaaaaacattattaatagcaatgcccacca
tcaagcgtgtttcaattttcaataaaattgatttttaaagccGGAACTAT
TAAAAAATCACCGGAataacctattttcgccggaaagacagtatttcttg
aatttctcgagctgtactttatatttttttatgaaattttgcacactgat
gcaaaatgacaatacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNgacggagcccgattttcgaaaaacatttttttccggccgaaaatgcc
agaaatatgccggaaaaaccggttttttttacattttctcgaattttcat
ccttagttttttctgatctttttgCAGAAatatgcgtattcgcaatgctc
aaaacatgacagagttcgattttttgagaaaattttttttacagccgaaa
atgccggaaatatgccggaaatcgccgtttttgcagatttttattgggct
ttttcctaacatttctttgttttttctcaaaaaaaaaacatcattgatag
caattcccaccatcaatcatgattcgattgtcaataaaactgattttttt
tttctcaaagtagaaaatgtcacggtagaggcgatggtttgagttttcta
gaaaccttatttattaagctgtgtaTTTTCTGAaagtggattgtttttat
aaagaaaagcgtttataATAATTTCTTTTAGCTTTTTCAATAATAGGGCT
GATAATTTCTCCCAATAGACATGctttcattatatattttttattttgtc
cagttatgtcttatgtgtttcattgtttcaatgttcattgattagttttg
ataaccaggtaggtccataaaagtatcacttgttcacattggattgacag
ggatgtggagcaagattcgTCAGAAaggggaaaagaaaaatattttttgc
ttatagcagacactgtcctgatataagatatgtgtctgatatgaaacggg
aacataCTTATGtaagataaaacctttaaaatagtATATATCATTTTGAT
GTTTCTTTCAGGAGATAGTTGACTGGTATCTAACAATTCGTGGAGCACGC
CTGAAATTCTTAACACCCTATTTATACGAAGTTGAACGTCCAGTGGTATG
TGATCATTTCTGGACTAAGGTCGTCTTTTAATATGGGCGTGGACTGATCT
GGCTATTAGCTATTCGtgatatttatgacgtcatgTTATTTACGGAAGCA
CCCATAAAAGACCGggtgtttgccactaattttgacTTTAACAATTAAAC
TAGTGGCAAACGTACGGATTATTTTGAGTGCTTTCATATAAAATATTACG
TCACGAATAACATGAATTGGCTACATGGCACGTCACtttgtttgacgtca
aaaagtttttcagcCAATCTCCATCTATTAAagcatggaattattataga
cactggaaaaacaatgagctgatttttgccaatttctcatgtacaagcct
tgtccgcagtaatgacattattgttcaccctccttNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
CTCTGAGATTCAAACTCGtctagttaattactaattatacgtcgttctga
cgttttaaatttcgagaaagatggaaaaacatgttatgtataagaaattg
aatgttaacaccagaaatttttaaacttcaacctcaaaaaatccaccATG
CCACCaccgtgccaccaaaagattttcagaccacagtggagctatgagac
tcacatctaatatatgtcaatctcagctcttctagGAGatatattggaaa
gatattcccaattcaaaattcgtgtcattataagcattttgtttgatttt
actcatctgatgatttttttctcacatcagatttcataaatgtatccgtt
tggtattctagcatttattttcaaacttttggccagcaaaagtacgaata
gaaaaagttaaaaaactttttagaaattagagtattaatcatttttcaaa
atcagagtccttcgcgccgccatgacagttgtcctttgcggataaagcta
gaacatcaattgttttctgaaacaatagaaagacaatacttctctctcca
ccgtttcatttgatgtttatccagagtctctataacaAATCCATGATTAA
AGCTACTATTTCCAAACAGACTTATTTAGCCAGGCCAGATAGGccagaaa
gaaaaacattttttaatacCTACGTTACCAACGTTTGTTCTTATTCAGCA
AATTCTAGTGCCGTGGGAAGCATTTTAATATGGAGGGCTGAGGTATAGTG
ACACCGCAAAAGCTAACTGTTGAggggattttgaaaatttaagttCCAGA
CGTCCGGAAAATGtacttaaaatgaaaatttatttcgagAAAGCTTTTCT
CAAGAAAAGTTATTcgtggaaaaataaaaaaaagtggtTTGAGTCGACGT
TCCCTTTATAATGCTACTTGCAGTCTAAAGTTTATGCTCTCTTTTTAACC
AAGCATACAGATGATGatcatagttttttttaatttttctaggtTGACTT
TTTGCAATCAAGGAAATTTATCAAATCAGGATATCTACACAAAACTGGAG
GCANt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038134XLOC_038134Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060633-exon-scaffold_348-1491911889:149886..149950TCONS_00060633-exon-scaffold_348-1491911889:149886..149950Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1510915933:149886..149950TCONS_00060633-exon-scaffold_348-1510915933:149886..149950Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1575043694:149886..149950TCONS_00060633-exon-scaffold_348-1575043694:149886..149950Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1491911889:155230..155332TCONS_00060633-exon-scaffold_348-1491911889:155230..155332Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1510915933:155230..155332TCONS_00060633-exon-scaffold_348-1510915933:155230..155332Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1575043694:155230..155332TCONS_00060633-exon-scaffold_348-1575043694:155230..155332Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1491911889:155877..156016TCONS_00060633-exon-scaffold_348-1491911889:155877..156016Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1510915933:155877..156016TCONS_00060633-exon-scaffold_348-1510915933:155877..156016Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1575043694:155877..156016TCONS_00060633-exon-scaffold_348-1575043694:155877..156016Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1491911889:160598..160689TCONS_00060633-exon-scaffold_348-1491911889:160598..160689Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1510915933:160598..160689TCONS_00060633-exon-scaffold_348-1510915933:160598..160689Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1575043694:160598..160689TCONS_00060633-exon-scaffold_348-1575043694:160598..160689Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1491911889:161370..161461TCONS_00060633-exon-scaffold_348-1491911889:161370..161461Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1510915933:161370..161461TCONS_00060633-exon-scaffold_348-1510915933:161370..161461Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1575043694:161370..161461TCONS_00060633-exon-scaffold_348-1575043694:161370..161461Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1491911889:161678..161790TCONS_00060633-exon-scaffold_348-1491911889:161678..161790Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1510915933:161678..161790TCONS_00060633-exon-scaffold_348-1510915933:161678..161790Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1575043694:161678..161790TCONS_00060633-exon-scaffold_348-1575043694:161678..161790Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1491911889:162428..162589TCONS_00060633-exon-scaffold_348-1491911889:162428..162589Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1510915933:162428..162589TCONS_00060633-exon-scaffold_348-1510915933:162428..162589Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1575043694:162428..162589TCONS_00060633-exon-scaffold_348-1575043694:162428..162589Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1491911889:165147..165230TCONS_00060633-exon-scaffold_348-1491911889:165147..165230Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1510915933:165147..165230TCONS_00060633-exon-scaffold_348-1510915933:165147..165230Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1575043694:165147..165230TCONS_00060633-exon-scaffold_348-1575043694:165147..165230Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1491911889:166828..166890TCONS_00060633-exon-scaffold_348-1491911889:166828..166890Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1510915933:166828..166890TCONS_00060633-exon-scaffold_348-1510915933:166828..166890Clytia hemisphaericaexon
TCONS_00060633-exon-scaffold_348-1575043694:166828..166890TCONS_00060633-exon-scaffold_348-1575043694:166828..166890Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:149886..166890 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.0859e-08	0	0	9.33194	7.52586	12.829	8.27599	0.000276721	0.491293	0.807206	4.32439e-05	6.4952	9.42271	0	1.51131e-07	0	0	15.8997	12.6833	0.122493	2.74009e-05	1.39592e-07	0	4.32791	5.07936	0.0373227	0	0	0.735567
Blast
[Close]
BLAST of TCONS_00060633 vs. Swiss-Prot (Human)
Match: ADAP2 (Arf-GAP with dual PH domain-containing protein 2 OS=Homo sapiens GN=ADAP2 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.278e-46
Identity = 106/275 (38.55%), Postives = 154/275 (56.00%), Query Frame = 3 
Query:   93 EQCAHRLQELMRIP--GNSQCADCGTEEPEPNFVSLNLGLFICIKCSGHHRALGTRFSVTKSILLDTFDDAKVKQMEAGGNMLGVEKWQVNVPKCWPIVDKHSPDDLIEQWIRAKYERQEFTENQVTEELRPYCVGSKYGFLMXXXXXDSKWQRRFFVLSAEEGYLKMYIKQGDNEPKHKISISGINLMMVHSDVTGEKHSMLITFPIMQNNQSKQRHIYVYADKSFEIVDWYLTIRGARLKFLTPYLYEV-ERPVVDFLQSRKFIKSGYLHKTG 908
            E+   RL EL+R P  GN+ CADCG  +P+  + S  LG+FIC+ C G HR      S  KS+ LD +DD+ V+ M   GN+    K++  VP  + I   +    L EQWIRAKYER+EF  +  T  L     G++ GFL K+ + +S++ RR FVL A EG LK + K+    PK  ISI  +N     ++  G  H + IT+          R+++VY +   EIVDW+  +R ARL++L     E+ E  +V FL +R ++K G++ KTG
Sbjct:    5 ERNKKRLLELLRAPDTGNAHCADCGAADPD--WASYKLGIFICLNCCGVHRNFPD-ISRVKSVRLDFWDDSIVEFMIHNGNLRVKAKFEARVPAFYYIPQANDCLVLKEQWIRAKYERREFMADGETISL----PGNREGFLWKRGRDNSQFLRRKFVLLAREGLLKYFTKEQGKSPKAVISIKDLN-ATFQTEKIGHPHGLQITY----RRDGHTRNLFVYHESGKEIVDWFNALRAARLQYLKMAFPELPESELVPFL-TRNYLKQGFMEKTG 266
The following BLAST results are available for this feature:
BLAST of TCONS_00060633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADAP21.278e-4638.55Arf-GAP with dual PH domain-containing protein 2 O... [more]
back to top