TCONS_00060638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060638
Unique NameTCONS_00060638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060638 ID=TCONS_00060638|Name=TCONS_00060638|organism=Clytia hemisphaerica|type=transcript|length=1761bp
GCTGTTGATAGCTCTTTTGTGttggttttttgttttgaaagttgtgTTTT
GTTAGTTTGGGATTTCTGGAAAGTCTCTATGCATCGTTCGAATTGTAAAC
GTTCTCGCTTCTCTGATTCCTGGAGATGGGGTCACGTGACAAGATCACTT
GATAATGCATTCAGATTGAGACTTTATGGTTATGCTGGCATTAGAATTTC
AAGGGTTGGAGTCTTAGATGATcTATACGTTCCGATCACCGATGGGAGTG
CAATTCAACAACAAAAACTTATCCCTCCAAATTCTTCCGTCTATGAACCT
GCTTTCAATgcaTTCAATTTAGGCGTGGAATTACCTCAGCATATACAACC
AGCAAGCCATCACCAAAAGACTTTACAACAACATAACACACAACCCTATC
ATCAACAAGCGTGGCCTAACCAGACACTCCAGGCTCAACACCCTACATTC
ATAGAAGCTCCTTCCACAGCTAACAAAGTTCTCCCCATTTTCGAAGGTCA
AAGTTTCCCGTTTCGATTATGGTATTTGGTCAATCATGAATTTTATGATG
ACGTAATCAAGTGGAGTGATGATGGGAATTACGTCATTATTACGTCAGAG
GGGCGATTTGAAGATAAGGTTTTGATCGAACCTCGAGATCGTATCTTTAA
AACGACCAGCATGAAGTCTTTCATTCGCCAGTTGAACTTGTATGGTTTTC
ACAAAGTCCAGTTGGACAAGGATAAAAACTTTTCGCATTTGAACGTCAAA
GATAAAGCGAGTTGGCCAGAAACCGTCTTTGCGCATTCATCTTTCAAAAG
ATCACGTCAAGAACTTTTAGAGCAAGTGAGACGACGTTGTAAAGTCAAGC
aacacaaacaaacaaaagcTCAAGGTTTTCCCGTCGAATCTTACCCGTCA
ACGTCGTCCGTCAGTAACCCAAAGAAACGGcgaaatatgtttttagaaTA
TTCAAACATGGTAGCATCTTCATCTGCTTCAAATCAACAACAATCTTCAA
CCCAACTCCAAGAATCACAGTCTGAAAATCTTCAACAAACGTACAATCCA
TCAGCAAGTGAAATTATGATGCAATACCCTAACCTTTTACCACAACCTGA
TCAATTCTTAACTGCTGGACGCGATGCCATGATGGCGACAACCTCCGCAC
AACGTCTCTCTCCCGCTTCTTCCGTCAAACGAAACCTGCAAGCAATCGAC
TGGGGAAATATCTCAAACATAAATAACTCCTCAACAAGCACAACAAACGA
AGATGTGTCACCGAGATTCGACTGTCAGATCAACCAGTTACAATCTCCAT
CAACGAACCGACAAGTGTCTCTTCGAGAGAAAACCACCCATCTCNGAACA
TAAATAACTCCTCGACAAGCACAACAAACGAAGATGTGTCACCGAGATTC
GACTGTCAGATCAACCAGTTACAATCTCCATCAACGAACCGACAAGTGTC
TCTTCGAGAGAAAACCACCCATCTCACAACACCGCCCTGTTTGCCGCCCG
CTGCTGAGCAATCCCTACTTGATTCAAGCATGTCAAAAGAGAATTTGAAC
CCTTTAGCTGATTTCTGTGCTTCTTTGTTTTACCCAAACAAAGAAAACGA
GCTGGGCTGtgatgactgaaaatgacttttttgaacttttggaaaaCTTA
GCTTCCATTTGTAACTATTTACTTAgaaatttagaatttaaaattttcac
cccTGTTATTCTCCACACTTTCGACCCTTTCTTATCCTAAACTAGTAGCG
TTTTTTCGGAT
Run BLAST on NCBI

transcript from alignment at scaffold_348:172618..178330+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060638 ID=TCONS_00060638|Name=TCONS_00060638|organism=Clytia hemisphaerica|type=transcript|length=5713bp|location=Sequence derived from alignment at scaffold_348:172618..178330+ (Clytia hemisphaerica)
GCTGTTGATAGCTCTTTTGTGttggttttttgttttgaaagttgtgTTTT
GTTAGTTTGGGATTTCTGGAAAGTCTCTATGCATCGTTCGAATTGTAAAC
GTTCTCGCTTCTCTGATTCCTGGAGATGGGGTCACGTGACAAGATCACTT
GATAATGCATTCAGATTGAGACTTTATGGTTATGCTGGCATTAGAATTTC
AAGGGTTGGAGTCTTAGATGATGTAATTATAACTTTCTACTTTTCTACAA
ATTTAATCTCGCAGAAAATTTACGTTGATTACAGTACGTTGATAAATATC
AACTTCACAGAAAACAAATGTGTCAACAGGTTTTATCCAACCAGATCCAA
CGAGGGGACCTTAATCTGAACAAATTACGACATTATATACCTTTCATtta
gatttgaattttcaaCCTGTCTTACTAGGGGGATTATGAAATTCATTGat
cgttcttaaattgttcttaggttttgactaaaatttatccttattttttc
tcatttctagcTATACGTTCCGATCACCGATGGGAGTGCAATTCAACAAC
AAAAACTTATCCCTCCAAATTCTTCCGTCTATGAACCTGCTTTCAATgca
gtaagttttttttaaatgcctttcaaaattcttaaaaatttagtaATACT
TATGGggaaaagaaaatgttaagtggATGATTTTAAGACTTAAGAAAATC
TCTCAAAAATCCCGAGAGAGGATTTTTTCTAATGGACCAAAAATCCtaaa
tttatactttttcctGGACTTTAAACTTCGTTGATTTGTCAAATCTTTCT
TTGAGCAAAATATTCGGCAGAATGAGTCTATTTTGCTCATTTTTGGCCAT
TTCCAGTGTACTTTATTTAGGCCAATCTTTAGTAACAGATTTTTACCCAT
TCCACAAGCCTATAAACGAAGAAAatcagttttcattttctttagagAGG
CCCTTCAAAAGACCTATGATTCACGCGATGGTGCAATTTTCTTTTCcaaa
ttcacacattcacgAATATTTTTTCCTAAATTCATGCAATTTCTGTTCAC
GAAAAGTTTTCCAAATACCCCATTCACACATTTGCGCATTCATtcaaacc
attgagtttaaagcccgaagggctagagttcaatctctaacctttctcag
gcaacaaaaagtgaagccttaaaaaatgcgccgacTTTTTGACAACAGAT
Tgtatctagcaattcctttgtttacgattgatattttttttcgaaattta
gcggcaaattttagtttcaatctgtcatttgtgtaaaaaccaggcgagcc
gctcaaggccgtgcaactttggtaggatttgttggcttcaaatcctacca
aagagattgacttctagcccttcgggcttatacttcattgattcAAACTC
CAGAGCGCCCCCATAGAGGCTTCTAGCCATCTTGATTGAGGATAAATCCT
AAACGCCCATAATTATTCCGTTCAGGGTTACTTCACGTTACTTCATTTGT
TTGAATTTcatggttttttttatttttgaacttttaaagcTAACTCATAG
ATcattgacagttacatcaaaatgccaaaaacattttgttcaaccacctt
cacttcaagataggccaccatagaatgaacttccttttataggatgaacc
atattcatgtggctttcagccttgcactccatcgcagagcctaatcaatt
ttaatgacttttttgactaatgaccaagttaaatttttctaattttttta
tatttgagtattaaaaaggcatgcattcaaataataaaggtttaaaattt
ttctctgggctagttaataaaatatctcaaataggctctgtgatggagtg
caaggctgaaatcttgaagtgaaggtggttgaacaaaatgtttttggcat
attgatgtaactgattgaTGTGTATGCCTGTTGCAACAACGTCAGGGTTT
TAATCAAACAAAACGATTGGGAAACATTGAGAAATTTGATCGTCACAGAT
CGTCAAATTAATCGATttaatgaaaaaagttttcaacgctaaattgaatt
aaaagaagagataatcagatggtttgtgatatttggcatgtgtaatcttt
ttattttcctgagcaaaatctcaaaatattttacctaaatattttctaaa
gtctattaattacaagtttttgacttttagtaaaaaatttcaacgtaaga
accgtgtgagaaccctttttcagaaatttcaaattttgaaatctcgACTG
TGGAAAATAATTACCCAAACATACTTGGAGGTTTTACTCAAGCTCACACA
TAAGCTTTCTTcaggccaaatatctcaaaccatctgattatccctttata
GCGCAGGCAATATGGGGCACTTGCAGGTGAACAAGGTCTTCAACTGTTCC
TACACATCTATATTTTGAGAATCACGATGGTTTTCAGGCTAACTCTCTAT
CACGAACAATTCAGGGGTGTCTTGAGAGCACCTGGGGTCGTTTTTTCTAG
CAGCTTTGCCTAGGGTAGGGCACTTGTTTCAtccaaactaatttttgaaa
tcatGTTCAAATTTCAGTTCAATTTAGGCGTGGAATTACCTCAGCATATA
CAACCAGCAAGCCATCACCAAAAGACTTTACAACAACATAACACACAACC
CTATCATCAACAAGCGTGGCCTAACCAGACACTCCAGGCTCAACACCCTA
CATTCATAGAAGCTCCTTCCACAGCTAACAAAGTTCTCCCCATTTTCGAA
GGTCAAAGTTTCCCGTTTCGATTATGGTATTTGGTCAATCATGAATTTTA
TGATGACGTAATCAAGTGGAGTGATGATGGGAATTACGTCATTATTACGT
CAGAGGGGCGATTTGAAGATAAGGTTTTGATCGAACCTCGAGATCGTATC
TTTAAAACGACCAGCATGAAGTCTTTCATTCGCCAGTTGAACTTGTATGG
TTTTCACAAAGTCCAGTTGGACAAGGATAAAAACTTTTCGCATTTGAACG
TCAAAGATAAAGCGAGTTGGCCAGAAACCGTCTTTGCGCATTCATCTTTC
AAAAGATCACGTCAAGAACTTTTAGGTGAGTAAAGCTCTATTTTCTCTAA
TTTAGGTGTCTAATGATAGCTCCcaagtttattaatttttttgattttgc
ccTAACTTGAAAGCTCTTTTGGTATATGAGAACGTCACTCACTTATCGTC
AGGATATCgtagcgaaacggaaccgtagagtgtgaacatggtcttagatt
TTAGTACTGTCTCACCTCCTTAGTTAGTCTCCCAACAACTTTTATTACAT
TCCTGTAGAGCAAGTGAGACGACGTTGTAAAGTCAAGCaacacaaacaaa
caaaagcTCAAGGTTTTCCCGTCGAATCTTACCCGTCAACGTCGTCCGTC
AGTAACCCAAAGAAACGGcgaaatatgtttttagaaTATTCAAACATGGT
AGCATCTTCATCTGCTTCAAATCAACAACAATCTTCAACCCAACTCCAAG
AATCACAGTCTGAAAATCTTCAACAAACGTAAGTCTCCTTTTGATCGTCT
TAAGCGGGGGGAGGGGGAGACCTTAACGTGCCGCCGTCAAATAtcatgaa
tgtttggtaaatttgtgaccctgtcagaacaaaaaatcgaaaagaagACG
AAAactttccaccctgaaaataaatagacaaaaagaaaaagaaaagaatt
aacCAAAAATCGACCGTGTCGGATATTCAATTAATAAATTTTCCAGATTA
GCCAGACCCTAAACAATAGACCCAGACCAGCAGTACGCCCCATACATAAT
TTTGCCTAAGTTAACAGTATCATTAGTGTTATCTTGGAGATCTAGACGAG
CTCTTGTCTTCAATCAACAAATACTTGTTACtcactttaaaactttaaag
aaTGAAGGAAATGCTTGGTATTTCTGCTGAGAGAGTTGCTGAAGATGTTG
TACAATTTTTGCGAAGTTGTAAAATTTATATGCTAAACGCCTACCActca
aaattattatttttttttcatataaaattaatattttaattttaaccTTC
ATTTTTACCCCTCTCATTTGAGCTTacaattttcactttttgtttGCAGG
TACAATCCATCAGCAAGTGAAATTATGATGCAATACCCTAACCTTTTACC
ACAACCTGATCAATTCTTAACTGCTGGACGCGATGGTAAGAATGTTGTGA
AACGacttttttttaacattcaAACTAGGTGCAAAACAGTTAACATGGCT
TTGTCGTTATGGGACAACACTCAACctttcgaaatttttcaaaaacaatt
aaattttcttaattaaagaaaatttacaGCAGATGTCTTTAATGTTTGCT
CCATTCATAAAGAAAATTCGTTTAAAAGTATTAAGGCCtattaattttta
caaaaaattgaatttcatgTTGCaaaaaattagcattttttgaGACAAAT
GGTCTTGAGAAGACAATATTTGCCCTGGGAAGACAAAAATTGGTCTCTAT
GTCAAAATGTTCCAGAAATTTTTAGTACATGTATACTAAAATAACAACTC
TTTAAAACTCTTTTGGTATACACTAGACGGCTCCCGTCGTTgcaaacgcc
ggtttagcttgcgcatcgaaagcccttaggatgataaagatggtattatt
attattgatgCTCTCTTTAATTCAAATAATCTTTAAGGGTAATTTGAGTT
AGTTAGCACATTGAGAAGTATACATTTATGACTGAGATTTCAGTACCGAT
CCCCCTCCCTGAGTTTTAAAAGCTTTAGACTTTCATCGAGAGAacacaaa
actttcaaatcagGTGAATCCTAAAAACAGGTGTCAGGGTAATCTTTTGA
TGCACCCTAATCTATAATCCTTTCTTAAGGGCAAATGCACCATTAAATCT
GCAAAGTCAAAGAGAGGTTAATTAGGGATCGTCAAACTTGGCTTTTTCAT
TGTAATATTCAAACACCTTTCTTTACCCTTGAATACTTCTGGGGTCAGAA
ATTTTCGAAGTGTTGTGAAATTTTCGACATTTATTCTCGCGAATTTgacg
aaaaacatttttaattttcgcctTTCAGCCATGATGGCGACAACCTCCGC
ACAACGTCTCTCTCCCGCTTCTTCCGTCAAACGAAACCTGCAAGCAATCG
ACTGGGGAAATATCTCAAACATAAATAACTCCTCAACAAGCACAACAAAC
GAAGATGTGTCACCGAGATTCGACTGTCAGATCAACCAGTTACAATCTCC
ATCAACGAACCGACAAGTGTCTCTTCGAGAGAAAACCACCCATCTCNGAA
CATAAATAACTCCTCGACAAGCACAACAAACGAAGATGTGTCACCGAGAT
TCGACTGTCAGATCAACCAGTTACAATCTCCATCAACGAACCGACAAGTG
TCTCTTCGAGAGAAAACCACCCATCTCACAACACCGCCCTGTTTGCCGCC
CGCTGCTGAGCAATCCCTACTTGATTCAAGCATGTCAAAAGAGAATTTGA
ACCCTTTAGCTGATTTCTGTGCTTCTTTGTTTTACCCAAACAAAGAAAAC
GAGCTGGGCTGtgatgactgaaaatgacttttttgaacttttggaaaaCT
TAGCTTCCATTTGTAACTATTTACTTAgaaatttagaatttaaaattttc
accccTGTTATTCTCCACACTTTCGACCCTTTCTTATCCTAAACTAGTAG
CGTTTTTTCGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038135XLOC_038135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060638-exon-scaffold_348-1491911889:172618..172839TCONS_00060638-exon-scaffold_348-1491911889:172618..172839Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1510915933:172618..172839TCONS_00060638-exon-scaffold_348-1510915933:172618..172839Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1575043694:172618..172839TCONS_00060638-exon-scaffold_348-1575043694:172618..172839Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1491911889:173128..173217TCONS_00060638-exon-scaffold_348-1491911889:173128..173217Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1510915933:173128..173217TCONS_00060638-exon-scaffold_348-1510915933:173128..173217Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1575043694:173128..173217TCONS_00060638-exon-scaffold_348-1575043694:173128..173217Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1491911889:175185..175692TCONS_00060638-exon-scaffold_348-1491911889:175185..175692Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1510915933:175185..175692TCONS_00060638-exon-scaffold_348-1510915933:175185..175692Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1575043694:175185..175692TCONS_00060638-exon-scaffold_348-1575043694:175185..175692Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1491911889:175926..176145TCONS_00060638-exon-scaffold_348-1491911889:175926..176145Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1510915933:175926..176145TCONS_00060638-exon-scaffold_348-1510915933:175926..176145Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1575043694:175926..176145TCONS_00060638-exon-scaffold_348-1575043694:175926..176145Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1491911889:176717..176802TCONS_00060638-exon-scaffold_348-1491911889:176717..176802Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1510915933:176717..176802TCONS_00060638-exon-scaffold_348-1510915933:176717..176802Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1575043694:176717..176802TCONS_00060638-exon-scaffold_348-1575043694:176717..176802Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1491911889:177696..178330TCONS_00060638-exon-scaffold_348-1491911889:177696..178330Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1510915933:177696..178330TCONS_00060638-exon-scaffold_348-1510915933:177696..178330Clytia hemisphaericaexon
TCONS_00060638-exon-scaffold_348-1575043694:177696..178330TCONS_00060638-exon-scaffold_348-1575043694:177696..178330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:172618..178330 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.228889	0.223203	0.129413	0	0.585695	0.243915	0.264504	0	0	0	0	0.152439	0	0	0	0.097509	0.515478	1.0567	0	0.305139	1.2377	1.77877	0.262439	0.715786	7.49179	9.99049	0.311605	0	0.508097	0.776506
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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