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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060645 ID=TCONS_00060645|Name=TCONS_00060645|organism=Clytia hemisphaerica|type=transcript|length=1561bpRun BLAST on NCBI protein sequence of TCONS_00060645-protein >TCONS_00060645-protein ID=TCONS_00060645-protein|Name=TCONS_00060645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp MSDCPKICEENTLVIALNYAQHAYQDHHIHSQCTSQNYKHGFDGIYRVVVRun BLAST on NCBI transcript from alignment at scaffold_348:404360..421900+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060645 ID=TCONS_00060645|Name=TCONS_00060645|organism=Clytia hemisphaerica|type=transcript|length=17541bp|location=Sequence derived from alignment at scaffold_348:404360..421900+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_348:404360..421900+ >TCONS_00060645 ID=TCONS_00060645|Name=TCONS_00060645|organism=Clytia hemisphaerica|type=CDS|length=5022bp|location=Sequence derived from alignment at scaffold_348:404360..421900+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00060645 vs. Swiss-Prot (Human)
Match: DIC (Mitochondrial dicarboxylate carrier OS=Homo sapiens GN=SLC25A10 PE=1 SV=2) HSP 1 Score: 172.555 bits (436), Expect = 2.359e-81 Identity = 81/152 (53.29%), Postives = 107/152 (70.39%), Query Frame = 2
Query: 605 QCTSQNYKHGFDGIYRVVVEERFHTLFAGVTMTATRGLFMTLGQVATYDQTKQILIMTGYFKDNVPTHVLGSFFAGTIATSITQPFDVIKTRMMNAKPGEYQGIYHCAKDISKDGIFKGLYRGFVPRWIRLGPHTILTWVFLEQLRKAFPLK 1060
Q +NY H DG+YRV EE LF+G TM ++RG +T+GQ++ YDQ KQ+++ TGY DN+ TH + SF AG AT + QP DV+KTR+MN+K GEYQG++HCA + +K G Y+G VP IRL PHT+LT+VFLEQLRK F +K
Sbjct: 135 QGQRRNYAHALDGLYRVAREEGLRRLFSGATMASSRGALVTVGQLSCYDQAKQLVLSTGYLSDNIFTHFVASFIAGGCATFLCQPLDVLKTRLMNSK-GEYQGVFHCAVETAKLGPL-AFYKGLVPAGIRLIPHTVLTFVFLEQLRKNFGIK 284 HSP 2 Score: 149.828 bits (377), Expect = 2.359e-81 Identity = 69/141 (48.94%), Postives = 93/141 (65.96%), Query Frame = 1
Query: 124 MSNKPKRQRWYLGGPAGAGAVMFTHPLDLLKVHLQQAKTTNRGLISTALKVIKNDGFLGLYGGISASILRQLTYNTTRFALYERLSAKLLENRNDALPFYQKLAIGCVSGFVAGVVGNPADMVLTRMQNDVRLPKDMRRKY 546
M+ + + RWY GG A GA THPLDLLKVHLQ + + AL+V++ DG L LY G+SAS+ RQ+TY+ TRFA+YE + ++ + LPF++K+ +G VSG G VG PAD+V RMQNDV+LP+ RR Y
Sbjct: 1 MAAEARVSRWYFGGLASCGAACCTHPLDLLKVHLQTQQEVKLRMTGMALRVVRTDGILALYSGLSASLCRQMTYSLTRFAIYETVRDRVAKGSQGPLPFHEKVLLGSVSGLAGGFVGTPADLVNVRMQNDVKLPQGQRRNY 141 The following BLAST results are available for this feature:
BLAST of TCONS_00060645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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