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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060647 ID=TCONS_00060647|Name=TCONS_00060647|organism=Clytia hemisphaerica|type=transcript|length=1400bpRun BLAST on NCBI transcript from alignment at scaffold_348:404386..421900+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060647 ID=TCONS_00060647|Name=TCONS_00060647|organism=Clytia hemisphaerica|type=transcript|length=17515bp|location=Sequence derived from alignment at scaffold_348:404386..421900+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060647 vs. Swiss-Prot (Human)
Match: DIC (Mitochondrial dicarboxylate carrier OS=Homo sapiens GN=SLC25A10 PE=1 SV=2) HSP 1 Score: 188.348 bits (477), Expect = 7.097e-69 Identity = 89/206 (43.20%), Postives = 126/206 (61.17%), Query Frame = 2
Query: 98 MSNKPKRQRWYLGGPAGAGAVMFTHPLDLLKVHLQQAKTTNRGLISTALKVIKNDGFLGLYGGISASILRQLTYNTTRFALYERLSAKLLENRNDALPFYQKLAIGCVSGFVAGVVGNPADMV--------------LTSYKHGFDGIYRVVVEERFHTLFAGVTMTATRGLFMTLGQVATYDQTKQILIMTGYFKDNVPTHVLGN 673
M+ + + RWY GG A GA THPLDLLKVHLQ + + AL+V++ DG L LY G+SAS+ RQ+TY+ TRFA+YE + ++ + LPF++K+ +G VSG G VG PAD+V +Y H DG+YRV EE LF+G TM ++RG +T+GQ++ YDQ KQ+++ TGY DN+ TH + +
Sbjct: 1 MAAEARVSRWYFGGLASCGAACCTHPLDLLKVHLQTQQEVKLRMTGMALRVVRTDGILALYSGLSASLCRQMTYSLTRFAIYETVRDRVAKGSQGPLPFHEKVLLGSVSGLAGGFVGTPADLVNVRMQNDVKLPQGQRRNYAHALDGLYRVAREEGLRRLFSGATMASSRGALVTVGQLSCYDQAKQLVLSTGYLSDNIFTHFVAS 206 HSP 2 Score: 92.0485 bits (227), Expect = 7.097e-69 Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 3
Query: 669 GTIATSITQPFDVIKTRMMNAKPGEYQGIYHCAKDISKDGIFKGLYRGFVPRWIRLGPHTILTWVFLEQLRKAFPLK 899
G AT + QP DV+KTR+MN+K GEYQG++HCA + +K G Y+G VP IRL PHT+LT+VFLEQLRK F +K
Sbjct: 210 GGCATFLCQPLDVLKTRLMNSK-GEYQGVFHCAVETAKLGPL-AFYKGLVPAGIRLIPHTVLTFVFLEQLRKNFGIK 284 The following BLAST results are available for this feature:
BLAST of TCONS_00060647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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