TCONS_00060896 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060896
Unique NameTCONS_00060896
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length223

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060896 ID=TCONS_00060896|Name=TCONS_00060896|organism=Clytia hemisphaerica|type=transcript|length=223bp
ATATTGATATCTTTAGCTTCATCGTCAATTATTAACGAATTTTTTACGAA
TTTTGgaatttatattttacaaaaaaaaccaTGTTTACGCATTAATTTAA
CTTATACACTTTGTGACTTAGTTCTTTTTAGTTAAtgataatataatttt
ttagaaacgaaaattttcttttacttttcaaaataCCAAACTCCAACAGA
CAGAGACCTGGGCTGAATTTTCT
Run BLAST on NCBI

transcript from alignment at scaffold_349:110481..110703

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060896 ID=TCONS_00060896|Name=TCONS_00060896|organism=Clytia hemisphaerica|type=transcript|length=223bp|location=Sequence derived from alignment at scaffold_349:110481..110703 (Clytia hemisphaerica)
AGAAAATTCAGCCCAGGTCTCTGTCTGTTGGAGTTTGGtattttgaaaag
taaaagaaaattttcgtttctaaaaaattatattatcaTTAACTAAAAAG
AACTAAGTCACAAAGTGTATAAGTTAAATTAATGCGTAAACAtggttttt
tttgtaaaatataaattcCAAAATTCGTAAAAAATTCGTTAATAATTGAC
GATGAAGCTAAAGATATCAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038226XLOC_038226Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060896-exon-scaffold_349-1491911889:110481..110703TCONS_00060896-exon-scaffold_349-1491911889:110481..110703Clytia hemisphaericaexon
TCONS_00060896-exon-scaffold_349-1510915933:110481..110703TCONS_00060896-exon-scaffold_349-1510915933:110481..110703Clytia hemisphaericaexon
TCONS_00060896-exon-scaffold_349-1575043694:110481..110703TCONS_00060896-exon-scaffold_349-1575043694:110481..110703Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:110481..110703 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18039	0	0	1.30755	0	0	0	2.84146	4.97344	0	2.39178	3.14452	0.785037	1.63054	1.34052	1.43859	0.886111	3.63294	0	1.31303	0	0	0	1.23044	0	0	0	0	0	1.33482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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