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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060935 ID=TCONS_00060935|Name=TCONS_00060935|organism=Clytia hemisphaerica|type=transcript|length=1457bp
CTAGCGTTTATCCGTGGTTTCAATGCAGAGACAGAATTGGATGTTGAGCT
CACCAAGAATGAAATGATCCAACTTTTGGGGACGTTGAACGGAGACCAAG
CTTCATCGGTCCCAGACTTCCTGTTCTTCACACAAGAAGGGCAAATTGAT
TACATTCAAACTAAAGGTCCGCCTCGAACTGAAAAACCAACTCTGCCAGG
AAGCAAACCCAAACCACCCAAAAGATCGGACGCCGAGATAACATTATCCA
AAGCATTGAATAGGATTAAAAAAGGACACAATGTGCCGGTGATCGAAAAA
TGGGCGAAAGTATTGGACCTTCTGTTGTTCACAGACCTCACTGCTGCACA
ACGAGATTGTAGTATTGACCGGATAGTCAGGAATGCGGACACGTCAATTA
ATACGTGTAAGAACAGTGATGGGAGCTCCACCAGTGGCAAATCATCAACC
AGTGGCGGTTCAAGCGGTAACAAAGGACAGAAGGGGAAACAAAGAAAAGA
CGAAGCAGCGAtggaagaaaaatttgaaaatgaggcAAAGAGAATGGAAA
TAAGTTATCAAGATATCAAAGAAGAAGTGAAGGAATATTTGGAGGATTTG
GAAAATACTGATGATGACGAAAATTACGGAGCCGAGAGTGAAAGCGaatc
ttttgatgaaattgaagaCACAGAAGAACATTTTGCAAGACGTTTTCAAA
GAGATTTGAAAAGAAGTTATCGACGAAATGTTTATCAGCCAGGAAATATA
GTTCAAACATTGGACACACAGCGCATGCGTAGAGGCTTGACGTACAGGTA
TTCCAATTACGGACAATGTTTTACGGAAGGTTCGGAGGGAGCTACGTCAG
ACACAGTTCGACTTTGTCAAACGTGCTATCATACTATCGACTTTGGAGAG
GATGTTGTTCCGCAGTACGCGAATAGCGTTGAATGTTCAGATAGTGCGAC
CATGTGTATCAGTGGAGATGGAACATGCACGCAGAAAGTCATCTATTACT
CCTTCAAGAAGCTGGTGAACGAACGTAACAACAAATGGGTCAGCTTCAAC
CAGCCACTAAATGTCAGCTGTGAATGTGAATGTATAACGAATTCAATGAC
TCACATGTATATGGTTGGtgaatcaaattaaaaaagatgaaAGCTCTGTG
TATTACGTGAAGTAATTTGTGGTTGTACGGAATAAAACCCTCCGTAGTTG
TCCCAGACTTTCATGCATTGCGTTATGTTACTTTTCTGGCGATATGAATT
CatgtaaacaaagatttagatgAAACCTTGTGGTTAAACAATGTTGAAAC
TAATTCAACCTTTCCTAATTTTCTTGGATACTTTGTTGAAGAATATGAGA
TTTAATTACTGATTCACTAATCACTCAGTAATCAACTAGAAGCTGTCGAC
AATAACAATGATGCTGTCAGGTTTTTTAGTTACCCGAAAATGCTTCACGA
ATAATGG Run BLAST on NCBI protein sequence of TCONS_00060935-protein >TCONS_00060935-protein ID=TCONS_00060935-protein|Name=TCONS_00060935-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
LAFIRGFNAETELDVELTKNEMIQLLGTLNGDQASSVPDFLFFTQEGQID
YIQTKGPPRTEKPTLPGSKPKPPKRSDAEITLSKALNRIKKGHNVPVIEK
WAKVLDLLLFTDLTAAQRDCSIDRIVRNADTSINTCKNSDGSSTSGKSST
SGGSSGNKGQKGKQRKDEAAMEEKFENEAKRMEISYQDIKEEVKEYLEDL
ENTDDDENYGAESESESFDEIEDTEEHFARRFQRDLKRSYRRNVYQPGNI
VQTLDTQRMRRGLTYRYSNYGQCFTEGSEGATSDTVRLCQTCYHTIDFGE
DVVPQYANSVECSDSATMCISGDGTCTQKVIYYSFKKLVNERNNKWVSFN
QPLNVSCECECITNSMTHMYMVGESN Run BLAST on NCBI transcript from alignment at scaffold_350:39307..40985+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060935 ID=TCONS_00060935|Name=TCONS_00060935|organism=Clytia hemisphaerica|type=transcript|length=1679bp|location=Sequence derived from alignment at scaffold_350:39307..40985+ (Clytia hemisphaerica)
CTAGCGTTTATCCGTGGTTTCAATGCAGAGACAGAATTGGATGTTGAGCT
CACCAAGAATGAAATGATCCAACTTTTGGGGACGTTGAACGGAGACCAAG
CTTCATCGGTCCCAGACTTCCTGTTCTTCACACAAGAAGGGCAAATTGAT
TACATTCAAACTAAAGGTCCGCCTCGAACTGAAAAACCAACTCTGCCAGG
AAGCAAACCCAAACCACCCAAAAGATCGGACGCCGAGATAACATTATCCA
AAGCATTGAATAGGATTAAAAAAGGACACAATGTGCCGGTGATCGAAAAA
TGGGCGAAAGTATTGGACCTTCTGTTGTTCACAGACCTCACTGCTGCACA
ACGAGATTGTAGTATTGACCGGATAGTCAGGAATGCGGACACGTCAATTA
ATACGTGTAAGAACAGTGATGGGAGCTCCACCAGTGGCAAATCATCAACC
AGTGGCGGTTCAAGCGGTAACAAAGGACAGAAGGGGAAACAAAGAAAAGA
CGAAGCAGCGAtggaagaaaaatttgaaaatgaggcAAAGAGAATGGAAA
TAAGTTATCAAGATATCAAAGAAGAAGTGAAGGAATATTTGGAGGATTTG
GAAAATACTGATGATGACGAAAATTACGGAGCCGAGAGTGAAAGCGaatc
ttttgatgaaattgaagaCACAGAAGAACATTTTGCAAGACGTTTTCAAA
GAGATTTGAAAAGAAGTTATCGACGAAATGTTTATCAGCCAGGAAATATA
GTTCAAACATTGGACACACAGCGCATGCGTAGAGGCTTGACGTACAGGTA
TTCCAATTACGGACAATGTTTTACGGAAGGTTCGGAGGGAGCTACGTCAG
ACACAGTTCGACTTTGTCAAACGTGCTATCATACTATCGACTTTGGAGAG
GATGTGTAAGTTTAATTACATTTTTTCAGCTTATAATATTTTGCAATGCA
TATTTCAAGGATGAAATTAAATCTTTGTTCTATATCCTTCATAGTATAAA
TCCATTTTACATAGGAAGTGGAAAGACGAGAGCAGCTGGAAAGTCGACCT
TCATTTTAAACTATCGCCAGTTTCAGCAGCAATAATAAGATAACAAAATC
GCTAATGTTTTAACATTCTTATTACAGTGTTCCGCAGTACGCGAATAGCG
TTGAATGTTCAGATAGTGCGACCATGTGTATCAGTGGAGATGGAACATGC
ACGCAGAAAGTCATCTATTACTCCTTCAAGAAGCTGGTGAACGAACGTAA
CAACAAATGGGTCAGCTTCAACCAGCCACTAAATGTCAGCTGTGAATGTG
AATGTATAACGAATTCAATGACTCACATGTATATGGTTGGtgaatcaaat
taaaaaagatgaaAGCTCTGTGTATTACGTGAAGTAATTTGTGGTTGTAC
GGAATAAAACCCTCCGTAGTTGTCCCAGACTTTCATGCATTGCGTTATGT
TACTTTTCTGGCGATATGAATTCatgtaaacaaagatttagatgAAACCT
TGTGGTTAAACAATGTTGAAACTAATTCAACCTTTCCTAATTTTCTTGGA
TACTTTGTTGAAGAATATGAGATTTAATTACTGATTCACTAATCACTCAG
TAATCAACTAGAAGCTGTCGACAATAACAATGATGCTGTCAGGTTTTTTA
GTTACCCGAAAATGCTTCACGAATAATGG Coding sequence (CDS) from alignment at scaffold_350:39307..40985+ >TCONS_00060935 ID=TCONS_00060935|Name=TCONS_00060935|organism=Clytia hemisphaerica|type=CDS|length=2262bp|location=Sequence derived from alignment at scaffold_350:39307..40985+ (Clytia hemisphaerica)
CTAGCGTTTATCCGTGGTTTCAATGCAGAGACAGAATTGGATGTTGAGCT
CACCAAGAATGAAATGATCCAACTTTTGGGGACGTTGAACGGAGACCAAG
CTTCATCGGTCCCAGACTTCCTGTTCTTCACACAAGAAGGGCAAATTGAT
TACATTCAAACTAAAGGTCCGCCTCGAACTGAAAAACCAACTCTGCCAGG
AAGCAAACCCAAACCACCCAAAAGATCGGACGCCGAGATAACATTATCCA
AAGCATTGAATAGGATTAAAAAAGGACACAATGTGCCGGTGATCGAAAAA
TGGGCGAAAGTATTGGACCTTCTGTTGTTCACAGACCTCACTGCTGCACA
ACGAGATTGTAGTATTGACCGGATAGTCAGGAATGCGGACACGTCAATTA
ATACGTGTAAGAACAGTGATGGGAGCTCCACCAGTGGCAAATCATCAACC
AGTGGCGGTTCAAGCGGTAACAAAGGACAGAAGGGGAAACAAAGAAAAGA
CGAAGCAGCGAtggaagaaaaatttgaaaatgaggcAAAGAGAATGGAAA
TAAGTTATCAAGATATCAAAGAAGAAGTGAAGGAATATTTGGAGGATTTG
GAAAATACTGATGATGACGAAAATTACGGAGCCGAGAGTGAAAGCGaatc
ttttgatgaaattgaagaCACAGAAGAACATTTTGCAAGACGTTTTCAAA
GAGATTTGAAAAGAAGTTATCGACGAAATGTTTATCAGCCAGGAAATATA
GTTCAAACATTGGACACACAGCGCATGCGTAGAGGCTTGACGTACAGGTA
TTCCAATTACGGACAATGTTTTACGGAAGGTTCGGAGGGAGCTACGTCAG
ACACAGTTCGACTTTGTCAAACGTGCTATCATACTATCGACTTTGGAGAG
GATGTTGTTCCGCAGTACGCGAATAGCGTTGAATGTTCAGATAGTGCGAC
CATGTGTATCAGTGGAGATGGAACATGCACGCAGAAAGTCATCTATTACT
CCTTCAAGAAGCTGGTGAACGAACGTAACAACAAATGGGTCAGCTTCAAC
CAGCCACTAAATGTCAGCTGTGAATGTGAATGTATAACGAATTCAATGAC
TCACATGTATATGGTTGGtgaatcaaattaaCTAGCGTTTATCCGTGGTT
TCAATGCAGAGACAGAATTGGATGTTGAGCTCACCAAGAATGAAATGATC
CAACTTTTGGGGACGTTGAACGGAGACCAAGCTTCATCGGTCCCAGACTT
CCTGTTCTTCACACAAGAAGGGCAAATTGATTACATTCAAACTAAAGGTC
CGCCTCGAACTGAAAAACCAACTCTGCCAGGAAGCAAACCCAAACCACCC
AAAAGATCGGACGCCGAGATAACATTATCCAAAGCATTGAATAGGATTAA
AAAAGGACACAATGTGCCGGTGATCGAAAAATGGGCGAAAGTATTGGACC
TTCTGTTGTTCACAGACCTCACTGCTGCACAACGAGATTGTAGTATTGAC
CGGATAGTCAGGAATGCGGACACGTCAATTAATACGTGTAAGAACAGTGA
TGGGAGCTCCACCAGTGGCAAATCATCAACCAGTGGCGGTTCAAGCGGTA
ACAAAGGACAGAAGGGGAAACAAAGAAAAGACGAAGCAGCGAtggaagaa
aaatttgaaaatgaggcAAAGAGAATGGAAATAAGTTATCAAGATATCAA
AGAAGAAGTGAAGGAATATTTGGAGGATTTGGAAAATACTGATGATGACG
AAAATTACGGAGCCGAGAGTGAAAGCGaatcttttgatgaaattgaagaC
ACAGAAGAACATTTTGCAAGACGTTTTCAAAGAGATTTGAAAAGAAGTTA
TCGACGAAATGTTTATCAGCCAGGAAATATAGTTCAAACATTGGACACAC
AGCGCATGCGTAGAGGCTTGACGTACAGGTATTCCAATTACGGACAATGT
TTTACGGAAGGTTCGGAGGGAGCTACGTCAGACACAGTTCGACTTTGTCA
AACGTGCTATCATACTATCGACTTTGGAGAGGATGTTGTTCCGCAGTACG
CGAATAGCGTTGAATGTTCAGATAGTGCGACCATGTGTATCAGTGGAGAT
GGAACATGCACGCAGAAAGTCATCTATTACTCCTTCAAGAAGCTGGTGAA
CGAACGTAACAACAAATGGGTCAGCTTCAACCAGCCACTAAATGTCAGCT
GTGAATGTGAATGTATAACGAATTCAATGACTCACATGTATATGGTTGGt
gaatcaaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060935-exon-scaffold_350-1491911889:39307..40211 | TCONS_00060935-exon-scaffold_350-1491911889:39307..40211 | Clytia hemisphaerica | exon |
| TCONS_00060935-exon-scaffold_350-1510915933:39307..40211 | TCONS_00060935-exon-scaffold_350-1510915933:39307..40211 | Clytia hemisphaerica | exon |
| TCONS_00060935-exon-scaffold_350-1575043694:39307..40211 | TCONS_00060935-exon-scaffold_350-1575043694:39307..40211 | Clytia hemisphaerica | exon |
| TCONS_00060935-exon-scaffold_350-1491911889:40434..40985 | TCONS_00060935-exon-scaffold_350-1491911889:40434..40985 | Clytia hemisphaerica | exon |
| TCONS_00060935-exon-scaffold_350-1510915933:40434..40985 | TCONS_00060935-exon-scaffold_350-1510915933:40434..40985 | Clytia hemisphaerica | exon |
| TCONS_00060935-exon-scaffold_350-1575043694:40434..40985 | TCONS_00060935-exon-scaffold_350-1575043694:40434..40985 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:39307..40985 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029034 | Cystine-knot_cytokine |
Blast
The following BLAST results are available for this feature:
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