TCONS_00060938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060938
Unique NameTCONS_00060938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060938 ID=TCONS_00060938|Name=TCONS_00060938|organism=Clytia hemisphaerica|type=transcript|length=566bp
TATCGATCTGGCTGCTGTTGGTCCTCCAGGCTAAAGACACATCATCCAAC
ACCTTGGACATCAAGTACAGCAAACAAGAACTTGTCAACCTTCTTGAATC
ACTAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGTA
AAGAAAGATTGGAAAACTATACTGACACAAAAGGGCCACCACGTAATCGA
ACTGAACTGCGTCGTGAAGATCGACCGAATCCTAAAAACCGAACGGATGC
TGAAAGAACGCTGGCGAAAGCTCAAAACCATTTATCAAGAGGTAAAGACG
TGCAGGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGAA
GACTTAGATCCAGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGCGG
TATTAAACCGCCCTGcggcaaatcaaacaaaacaatCATCCGTAAAGTTC
GTAGACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATTAGCGAtacag
aagaagaagaaaagacaagaagctttgaggaagaaaaGAAAGAGAGAAGA
ATTAGGAAGAATCCCA
Run BLAST on NCBI

transcript from alignment at scaffold_350:43579..51341+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060938 ID=TCONS_00060938|Name=TCONS_00060938|organism=Clytia hemisphaerica|type=transcript|length=7763bp|location=Sequence derived from alignment at scaffold_350:43579..51341+ (Clytia hemisphaerica)
TATCGATCTGGCTGCTGTTGGTCCTCCAGGCTAAAGACACATCATCCAAC ACCTTGGACATCAAGTACAGCAAACAAGAACTTGTCAACCTTCTTGAATC ACTAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGTA AAGAAAGATTGGAAAACTATACTGACACAAAAGGGCCACCACGTAATCGA ACTGAACTGCGTCGTGAAGATCGACCGAATCCTAAAAACCGAACGGATGC TGAAAGAACGCTGGCGAAAGCTCAAAACCATTTATCAAGAGGTAAAGACG TGCAAGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGAA GACTTAGATCCAGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGTGG TATTAAACCAGAAGTGCAGCCCTgcggaaaatcaaaaaaaataatcatcC GCAAAGTTCGTAGACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATTA GCGATACAGAGGAAGAAGAAAAGACAAGAAGCTTTGATgaagaagagaaa gagagaaGAATTAATAAGAATCCAACCCTCGTTGGAGGAATTGGAAGATA TCAAACATATTCTGGAAGATAATTTGGAAGATGAGAATGCAGAGGAAGAA CAAGATGAAAATTTAGaggaagatgaagatgaagaaggcgAGAATCGATT CAAGAGAAGTTCAAACCAACCACAAAACGACCAACCTAAAACCTCCAATC ATCATCGCTCACGAAGAAGCCTCGTACAGAATTTAGACGTCGTGCGCATG CGTAGATCTTTGTCGTATACGTATTCTAATGAAGGGTCGTGTTTCGTTGA AGGTTCGGAAGGGAGTACGAGCGATACTATCCTGCTTTGTGAAACTTGCT ACAAAACGGTGGATTTCGGAGAGAGTGTGTAAGTTTTCCTTCCTCATTCA TCTTCTTTTCCTTTGAAGATTAGACTTGGCATGCTTTGCTTTtatttctc tcttcttttttgTATGAATATTTGCCCTGGTGCGTCTCATTGATGCTTAA CTGTATACCTTACACCATATCTACCTCGTTGGGGTAGGGGGACAAATAAG CACCCCCCTGCTAGAATTTAGAAGGTGAAGGTTATGACGACGATTGCTAG TTTTTGTCTTTCATGtaactgttttcttttttagagtTCCGCAGTACGCG AATAGCGTTGAATGTTCTGATAGCGCGACCATATGCATTAGTGGAGATGG AACATGCACGCAGAAGGTCATCTATTACTCCTTCAAGAAATTAGTGGATT CTGTTTCGAACACTTGGGAAAGCTACCAGCAACCACTGAATGTCAGCTGT GAATGTGAGTGTATTGCGAATTCGATGACTCACATGTATATGGTTGGTGA CTCAAATTAAAAACTCAActcgtgaaaaaaaaaaaaaaaaaaaagatttt acaagAATTGCATAATAAATGCATGATGAACTATCCAATGAAGTGGTTAG CACTGTGAAAAGTTGAGAAAGCTCTTGAGTTTAATAATTTTTGCATCATT TGACTGATTAGCAATtatattcaataaaatatttaatttaataataattt atatAATTATATTAATTTAAGCTGGAAAATTTATCGTAAAATATTCAAAG TTCTCTCACTCCTCATTTGCTTGTTTAACTACTCTAACAAATTCACCGTG GGCTTCCAAAACGGTTTACAGCTCACTGCATTCCCAAGGGTTGAGAGTGG GCTATCGATCTATGGGAATAAAGAGAAAACGTATTCCCTTTAAGAAAGAA TCATCGTCACTTGGTGACGTAACGTTCGTTTAAGAGTATGCAGTCATTAT TTGACATTGCATGCTCGTTTGGAATCTTGCGACTTTCCATTCTTATTGGT GTTCAGACAATTGCGTGCTTCTTGTGCCCTAGTGCGTCTCGTTCCTTTGT GGGTAGTTCATGGGACCGAAAAAAATGATGGTTGGTAGTTGGTTGGTCCG AGAaagcaaagatttattatacactggataaacgactcaaaAAACGAGGG ATAGCGAtcattgtaatttcattgtttcagaaaacaattgctgttctagc tttgtccgcaaaggacaactgtcatggcggctcgaaggtgtctgatttaa aaaaatgtttatcagtcttatttttaaaaagttctctagctctttctttc tgtacatttgcagaaaaaaaagtttgaaagtaagtcGAGTATTCCAAGGC acatacatttgtgaaatctaatgtgagaaaaacatcattagacaagaaat tcagccaaaatgcttatagtgacacaaaGTTTTCAatcggaaatatcttt ccaagactgtcctcGTAAGAGCTGAAATcaacatacataagacttgagtg tcttggctccactgtggtatgaaaatcctttggaggcacgtggtggcaag gtgtttttttttaggttgaagtttgaaaatttccggtgtcaacattaaat ttcttatatacaacacgtcttttgcatctttctcacagcttgaaacgtca taacgacttattattatcaattaagtggaagaatccgactctcacaggaa agttttaaatctcttttgggaattggatgagtgattttcgatatgaaatg caataaaaatgcttcgaaaaatcatttaatgagggaaggagagtgaacaa tactatcattactgcggacatagctagtacacgagaaatcggcaaaaatc tgttacttgtatatccagtgtataataaatccttgatcATAtactaaaag gttttttgcTTTCGGTAACTGAGATACAGGAGACTAAGTTCTGATGAGTT TAGAAGAGGAGACAAAGTGCCGGGTCCGCTGACAGCTAATAGATGAGTAT CAAAAGTATAATCATTGTCCTTGCTACATATATGCTCCATTTAGAGAAGT CTGAATCATAGATAATATAGGACCTGGAGGGGAGGGCACTCAAGGTAAGA GACCTACCATAGAGTGCGACCCTTAAGGGTACGTTTTTACGCTTCCCAAA GTGCATTATAACATGTAAGTGTCAAAATTAGGAAAAGTGCAAGAAAATAC CTTGCATGAGTATAAAAAGTGTGAAGAACAAAGCTTTTTGGGCAAAGTAT TCCAAAATCTCACCATTATTTGCCCAATAATTTCTTTAAAGGTACaaaat ttccaagaaaatgcAGAGGCGACTTTTTGCCTGAATTtactaaaatttgg ctgaattttctTTGTAGGGTCTGATTTTAAAGACCTAATTTTGGCCATAC ATACGGTAGTTTCCTGATCGAGTGCCCGAGGAGCACGAATccattactct cgggtacctaatagccgccccccgccccccgctaattaacttttgggaaa atgtttttgaaagtttcctcttttgtcctaattctgctgtattagcctcc ttttcaaaaattttccacccaggacagttttattccaaccctcccgctta ttaagttttgaggtTTTTTCCATACCCCCCCCCCNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNccccccccccccgcttattccaaacccaccggctattaggtaccc caGAGTAATTAGTGTGGATGTCAGCATCCTCGTGTATGGTTGTTAACTTA CCAGTGCCTACAACTTCATACCTCCACACTATCCACGCTTGTCCACATTA AGACCATAAAAATAAGACTTGAAAAAGTGTCACACTCCACTTATTGAAAA ATctaattattttgatattttgcaaaaaacttaAAGATACCCTTACATTT CCCAGGCCTTCAATAGGGTTTCCTACTACATTTATTTCACTCGATgtctt ctttgaaaaaatgtattGTCTTTGGGAGAAAAACATTTCCTGGCtatttg aagaaactttttcaGGTTctatatttttgatgacgcaTTAGCAAAGCATA TTACTGGAAAGTGAAATCCACGTAtctatcacaggaaaaaattttcaatt tccaaggttggaaatttcaagttttcttagttggaaaaaagataaaatcc aatggaaaaatCCAATCTGGAAATGTGGGACattttccaaggttggaaat tttgcattttccatggcttggaattttcaaaaatctaggttgaaaaaagc ctaaatccaaaaagtgatggcagagatgtggaaaaaatgatcttaaacaa ggtttttgtttttgtgaacagtaactcgctagcctaggctcgatggctcc cggtcaatctctggTTATTGTTCGCatagatacgtggttgatcttagatc actgtgcgaactcaccgcgattgaccgaggccgctccgaagagacgcctc acctgacggaaacttacagcttgactgctcacatattaaggccgctaccc actcagtATTTTATGGTCGGCGAACAAGGCGCACAGGCTCGGGCGCTTTG GTCGCTGAACGCTTTTCCCATTCcacacattttttcttttttctattgtt gatattttttgcacacggtacaagagagttaaatgtctcttctgattggc tatttaaaaaagaacaatagggaaGCCGCACAGCCtagcaaaaaaagtta aaaagtttcaactcttgttgCGCTCAAAGCGAGAGCCCACGAAGgcttga tttatgtaatttatgcaataattaagccGTGCGCCTTGTACGACCATAAA ATTCCgagtgggtagcggccttttatagcctaatatctaggttagccata catcaaaacagttttgaacgaaaaatcgcttgtggttttctcaaaggaca tgtgcagaaaatggttacaaaaacgtaatttctacatgggtttttaacgt tttccaaactgtttgggagaaacacaaatttccgacccaaaaagtctagt ctTTCAACCCGAGGTagcaaatttacaaaaatatgtattttcacattgAT TTTTGACCTTATTTTCgattcccaaactgtttggaaaataaagatttccc acccaaaaagtcatgttttccaaccagccttggaaaattgtcatttctac atgggtttttttcacttgatttttcaagggcattggtttattctacaaaa cctatgggtaatttacgttttccaaatcagcttaaggtaatcgctcaaat ttccaaccctcaattataaaaccaaaatttccaacccaaaaatattgaat ttccaaccctGGAAATCGAAAAGTTTTTCCTGtgataattttgagatttt aaccaatcagattagTCCTATGCCAGTACTTTTAACTAGCTCAGTAAAGC GGAAGTAATTTctctttcatcatttttttttttgcattcccAAACCGGAG gcgttggaaaggttttttatAACCAAGGGATTATTCAATTATTCAATCAT TAAAGAATATTAAGAAAGTCGattcatatttttttgaaagcaTCATTAAA TGATTATGTTGGCCCTATGTTGGAGTTGCTACTTATGTACTTAATTAGTt tattattttaacaaaaaaaaatgcttttatttCCCGTGCCATGGCCGTGC GATTTCACTCTTTTCTGTtaaatcgtttttttttctataacaCAAATTGT GTGGTTGGCTGTAGAAGGTTGTATGTTTATAGAGAAGATATGAAGATTCG ATCTTTGGTGAGAATATTTTTTCGATTAAAACTTTTTGGTATTTATACAG AGGTTCTTTCTTACCGGAAAGATTTCTATCCTATTTGAATATTGAGATCT CGGACAGTTTGTGTCAACGGAGCAGACTTAGTTTTGGCCTTTTTTATCCC CGGATGCCTAAgctcaaaactgaaaaaaaatattacccCATCCATGCGAT TTTCAGTTATAAATTTGATTTAGATTCTTAAGTTTGCAATATATgtaggg gggggtttcagggggtacccgattccgcaattccgtcaattttttctcca atttccgtcaaaccgtcttaaattgaaccaaaattccgtcacccaaaatt cctttgaaattcaatatttttgtcgaaaattccgcaaattttgaataTCT TTTactaattccgaaattccgcaaatttttttgctaaattccgtttttcc gcactaaaattgtctaattttccgtctccgtcagagaacccaatttccgt aattccgattccgctcctccgccaaccgtgAAAACCCCCCTATGtagatt gcttgaaaaagaaaagttacTTGATTTGTTTCATGCAAATTATACACTTA ATTGTATAAAAGAATAATTCGAGGCCTGTTTtccctaaaatcaaaataaa tcgatCTCGGAAGGTGGTACAATTACAATTACACCACACTACTCTAtgct ttcatttttgatttttcatctcCGTATATTAACACACCCTGATGTGTCAC AGACCGGCTGAAACCCCAATCCACTAGAATATGGCTAAATGTTTGCCCCC GCTAGGAAGAATATCCTACAAGCTCAGTCCCGCTGGGAAATCGACTTTGA attcactccaaaaccatccccactggattttttaagccTGGAGCAGtaca atttttatccccatcgGGATTTTGATAAGAACTTTTACCCCTGCTGTGGG ATAAAGCTCCACCGAGGCTGTAGGACAGGGGTCTATTAAAACTTAGTATC ACAAATTATACTTGGGTAAACTAAGTGGAAGTGACCTACCTCTATAACAA CATGCCATAGAGCAACAACCAAGAGAACGGTTGTAAAATATACTCAACAT AATAAACCAAACCAAGAAATCCAGCAAATTAACTTATAAatcacaaaaag aaaaatttccatTGAGAGCAAATGAGATCGTGGTGAATTAgctttgaaaa cattttaactTTATAGCTGGAATCATTCGGTGTATTTTGTAAATATGAGA CAAAATAAGAGCTTGAAAACTGATACCGCCCTTTCAAATAATagaaagtt gacaaaaaaatcatttcattttatagCAGGTGTTAATAAATTTTTTGGTT CGTATTATAAAATGAAGCAAcaataaaatagaataaaatgaaggataaat ttgaaaaagtttttgccTTTAACTGATTTGAAAGTTTTATATGAATAAGA TATGATGAGAAAATacttttgacatatttttttgcttttaccTATTCAGA TATCGATCTGGCTGTTGATCCTCCTGACTAAAGACACATCATCCAACACC TTGGACATCAAGTACAGCAAACAAGAACTTATCAATCTTCTTGAATCACT AAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGTAAAG AAAGATTGGAAAACTACACTGATACAAAAGGGCCACCACGTAATCGAACT GAATTGCGTCGTAAAGATCGACCGAATCCTAAAAACCGAACGGACGCTGA AAGAACGCTGGCGAAAGCTCAACACCGTTTATCAAGAGGTAAAGACGTGC AGGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGAAGAC TTAGATCCAGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGCGGTAT TAAACCGCCCTGcggcaaatcaaacaaaacaatCATCCGTAAAGTTCGTA GACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATTAGCGAtacagaag aagaagaaaagacaagaagctttgaggaagaaaaGAAAGAGAGAAGAATT AGGAAGAATCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038256XLOC_038256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060938-exon-scaffold_350-1491911889:43579..43869TCONS_00060938-exon-scaffold_350-1491911889:43579..43869Clytia hemisphaericaexon
TCONS_00060938-exon-scaffold_350-1510915933:43579..43869TCONS_00060938-exon-scaffold_350-1510915933:43579..43869Clytia hemisphaericaexon
TCONS_00060938-exon-scaffold_350-1575043694:43579..43869TCONS_00060938-exon-scaffold_350-1575043694:43579..43869Clytia hemisphaericaexon
TCONS_00060938-exon-scaffold_350-1491911889:51067..51341TCONS_00060938-exon-scaffold_350-1491911889:51067..51341Clytia hemisphaericaexon
TCONS_00060938-exon-scaffold_350-1510915933:51067..51341TCONS_00060938-exon-scaffold_350-1510915933:51067..51341Clytia hemisphaericaexon
TCONS_00060938-exon-scaffold_350-1575043694:51067..51341TCONS_00060938-exon-scaffold_350-1575043694:51067..51341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:43579..51341 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (29.7989 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.4998 7.34856 3.6342 2.37922 10.1206 7.30166 28.5996 29.7989 14.6579 18.3883 17.6785 21.6945 7.32941 6.16306 0.242576 0 0.0957214 0 4.95234 7.81894 0 0 6.1214 4.28416 1.23859 1.61252 0.446623 1.46515 2.38611 3.93288
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500550Sequence
Match NameE-valueIdentityDescription
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