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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060960 ID=TCONS_00060960|Name=TCONS_00060960|organism=Clytia hemisphaerica|type=transcript|length=980bp
GCCAAGTCTAATCTTCAAAGGTAAAGAAGATGAGGAAGGAAAACTTACAC
ACTCTCTCCGAAATCCACCGTTTTGTAGCAAGTTTCACAAAGCAGGATAG
TATCGCTCGTACTCCCTTCCGAACCTTCAAGGAAACACGATCCTTCATTG
GAATACGTATACGATAAAGATCTACGCATGCGCACGACGTCTAAATTCTG
TACGGGGCTTCTTCGTGAGCGATGATGATTGGAGGTTTTAGGTTGGTCGT
TTTGTGGTTGGTTTGAACTTCTCTTGAATCGATTCTcgccttcttcatct
tcatcttcctCTAAATTTTCATCTTGTTCTTCCTCTGCATTCTCATCTTC
CAAATTATCTTCCAGAATATGTTTGATATCTTCCAATTCCTCCAACGAGG
GTTGGATTCTTATTAATTCttctctctttctcttcttcATCAAAGCTTCT
TGTCTTTTCTTCTTCCTCTGTATCGCTAATTCTTCACGCTTCTTTTTCTG
TTGTTGTTTTCGTCTACGAACTTTGCGgatgattattttttttgattttc
cgcAGGGCTGCACTTCTGGTTTAATACCACCCAGCGTTTTAATTGCCGTG
CATTCCTGGATTTCTGGATCTAAGTCTTCGAAAAGTAACATGTCCAATAT
TCTGGCCCATCTGGTGATCACTTGCACGTCTTTACCTCTTGATAAATGGT
TTTGAGCTTTCGCCAGCGTTCTTTCAGCATCCGTTCGGTTTTTAGGATTC
GGTCGATCTTCACGACGCAGTTCAGTTCGATTACGTGGTGGCCCTTTTGT
GTCAGTATAGTTTTCCAATCTTTCTTTACTAAAGAACAAGAAATCAGGTA
CTGACGAGTCTTCGCCACCGCTTAGTGATTCAAGAAGGTTGACAAGTTCT
TGTTTGCTGTACTTGATGTCCAAGGTGTTGGATGATGTGTCTTTAGCCTG
GAGGACCAACAGCAGCCAGATCGATATCTG Run BLAST on NCBI transcript from alignment at scaffold_350:43575..51718- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060960 ID=TCONS_00060960|Name=TCONS_00060960|organism=Clytia hemisphaerica|type=transcript|length=8144bp|location=Sequence derived from alignment at scaffold_350:43575..51718- (Clytia hemisphaerica)
GCCAAGTCTAATCTTCAAAGGTAAAGAAGATGAGGAAGGAAAACTTACAC
ACTCTCTCCGAAATCCACCGTTTTGTAGCAAGTTTCACAAAGCAGGATAG
TATCGCTCGTACTCCCTTCCGAACCTTCAAGGAAACACGATCCTTCATTG
GAATACGTATACGATAAAGATCTACGCATGCGCACGACGTCTAAATTCTG
TACGGGGCTTCTTCGTGAGCGATGATGATTGGAGGTTTCAGGTTGATCGT
TTTGTGGTTGGTTTGAACTCCTCTTGAATCGATTCTCGCCTTCTTCTTCT
TCATCTTCCTCTACATTCTTATCTTCCAAATTATCTTCCAGAATATGTTT
GATATCTTCCAGTTCCTCCAAAGAAGGTGGGATTCTTCCTAATTCTTCTC
TCTTTCTTTTCTTCCTCAAAGCTTCTTGTCTTTTCTTCTTCTTCTGTATC
GCTAATTCTTCACGCTTCTTTTTCTGTTGTTGTTTTCGTCTACGAACTTT
ACGGATGATTGTTTTGTTTGATTTGCCGCAGGGCGGTTTAATACCGCCCA
GCGTTTTAATTGCCGTGCATTCCTGGATTTCTGGATCTAAGTCTTCGAAA
AGTAACATGTCCAATATTCTGGCCCATCTGGTGATCACCTGCACGTCTTT
ACCTCTTGATAAACGGTGTTGAGCTTTCGCCAGCGTTCTTTCAGCGTCCG
TTCGGTTTTTAGGATTCGGTCGATCTTTACGACGCAATTCAGTTCGATTA
CGTGGTGGCCCTTTTGTATCAGTGTAGTTTTCCAATCTTTCTTTACTAAA
GAACAAGAAATCAGGTACTGACGAGTCTTCGCCACCGCTTAGTGATTCAA
GAAGATTGATAAGTTCTTGTTTGCTGTACTTGATGTCCAAGGTGTTGGAT
GATGTGTCTTTAGTCAGGAGGATCAACAGCCAGATCGATATCTGAATAGG
TAAAAGCAAAAAAATATGTCAAAAGTATTTTCTCATCATATCTTATTCAT
ATAAAACTTTCAAATCAGTTAAAGGCAAAAACTTTTTCAAATTTATCCTT
CATTTTATTCTATTTTATTGTTGCTTCATTTTATAATACGAACCAAAAAA
TTTATTAACACCTGCTATAAAATGAAATGATTTTTTTGTCAACTTTCTAT
TATTTGAAAGGGCGGTATCAGTTTTCAAGCTCTTATTTTGTCTCATATTT
ACAAAATACACCGAATGATTCCAGCTATAAAGTTAAAATGTTTTCAAAGC
TAATTCACCACGATCTCATTTGCTCTCAATGGAAATTTTTCTTTTTGTGA
TTTATAAGTTAATTTGCTGGATTTCTTGGTTTGGTTTATTATGTTGAGTA
TATTTTACAACCGTTCTCTTGGTTGTTGCTCTATGGCATGTTGTTATAGA
GGTAGGTCACTTCCACTTAGTTTACCCAAGTATAATTTGTGATACTAAGT
TTTAATAGACCCCTGTCCTACAGCCTCGGTGGAGCTTTATCCCACAGCAG
GGGTAAAAGTTCTTATCAAAATCCCGATGGGGATAAAAATTGTACTGCTC
CAGGCTTAAAAAATCCAGTGGGGATGGTTTTGGAGTGAATTCAAAGTCGA
TTTCCCAGCGGGACTGAGCTTGTAGGATATTCTTCCTAGCGGGGGCAAAC
ATTTAGCCATATTCTAGTGGATTGGGGTTTCAGCCGGTCTGTGACACATC
AGGGTGTGTTAATATACGGAGATGAAAAATCAAAAATGAAAGCATAGAGT
AGTGTGGTGTAATTGTAATTGTACCACCTTCCGAGATCGATTTATTTTGA
TTTTAGGGAAAACAGGCCTCGAATTATTCTTTTATACAATTAAGTGTATA
ATTTGCATGAAACAAATCAAGTAACTTTTCTTTTTCAAGCAATCTACATA
GGGGGGTTTTCACGGTTGGCGGAGGAGCGGAATCGGAATTACGGAAATTG
GGTTCTCTGACGGAGACGGAAAATTAGACAATTTTAGTGCGGAAAAACGG
AATTTAGCAAAAAAATTTGCGGAATTTCGGAATTAGTAAAAGATATTCAA
AATTTGCGGAATTTTCGACAAAAATATTGAATTTCAAAGGAATTTTGGGT
GACGGAATTTTGGTTCAATTTAAGACGGTTTGACGGAAATTGGAGAAAAA
ATTGACGGAATTGCGGAATCGGGTACCCCCTGAAACCCCCCCCTACATAT
ATTGCAAACTTAAGAATCTAAATCAAATTTATAACTGAAAATCGCATGGA
TGGGGTAATATTTTTTTTCAGTTTTGAGCTTAGGCATCCGGGGATAAAAA
AGGCCAAAACTAAGTCTGCTCCGTTGACACAAACTGTCCGAGATCTCAAT
ATTCAAATAGGATAGAAATCTTTCCGGTAAGAAAGAACCTCTGTATAAAT
ACCAAAAAGTTTTAATCGAAAAAATATTCTCACCAAAGATCGAATCTTCA
TATCTTCTCTATAAACATACAACCTTCTACAGCCAACCACACAATTTGTG
TTATAGAAAAAAAAACGATTTAACAGAAAAGAGTGAAATCGCACGGCCAT
GGCACGGGAAATAAAAGCATTTTTTTTTGTTAAAATAATAAACTAATTAA
GTACATAAGTAGCAACTCCAACATAGGGCCAACATAATCATTTAATGATG
CTTTCAAAAAAATATGAATCGACTTTCTTAATATTCTTTAATGATTGAAT
AATTGAATAATCCCTTGGTTATAAAAAACCTTTCCAACGCCTCCGGTTTG
GGAATGCAAAAAAAAAAATGATGAAAGAGAAATTACTTCCGCTTTACTGA
GCTAGTTAAAAGTACTGGCATAGGACTAATCTGATTGGTTAAAATCTCAA
AATTATCACAGGAAAAACTTTTCGATTTCCAGGGTTGGAAATTCAATATT
TTTGGGTTGGAAATTTTGGTTTTATAATTGAGGGTTGGAAATTTGAGCGA
TTACCTTAAGCTGATTTGGAAAACGTAAATTACCCATAGGTTTTGTAGAA
TAAACCAATGCCCTTGAAAAATCAAGTGAAAAAAACCCATGTAGAAATGA
CAATTTTCCAAGGCTGGTTGGAAAACATGACTTTTTGGGTGGGAAATCTT
TATTTTCCAAACAGTTTGGGAATCGAAAATAAGGTCAAAAATCAATGTGA
AAATACATATTTTTGTAAATTTGCTACCTCGGGTTGAAAGACTAGACTTT
TTGGGTCGGAAATTTGTGTTTCTCCCAAACAGTTTGGAAAACGTTAAAAA
CCCATGTAGAAATTACGTTTTTGTAACCATTTTCTGCACATGTCCTTTGA
GAAAACCACAAGCGATTTTTCGTTCAAAACTGTTTTGATGTATGGCTAAC
CTAGATATTAGGCTATAAAAGGCCGCTACCCACTCGGAATTTTATGGTCG
TACAAGGCGCACGGCTTAATTATTGCATAAATTACATAAATCAAGCCTTC
GTGGGCTCTCGCTTTGAGCGCAACAAGAGTTGAAACTTTTTAACTTTTTT
TGCTAGGCTGTGCGGCTTCCCTATTGTTCTTTTTTAAATAGCCAATCAGA
AGAGACATTTAACTCTCTTGTACCGTGTGCAAAAAATATCAACAATAGAA
AAAAGAAAAAATGTGTGGAATGGGAAAAGCGTTCAGCGACCAAAGCGCCC
GAGCCTGTGCGCCTTGTTCGCCGACCATAAAATACTGAGTGGGTAGCGGC
CTTAATATGTGAGCAGTCAAGCTGTAAGTTTCCGTCAGGTGAGGCGTCTC
TTCGGAGCGGCCTCGGTCAATCGCGGTGAGTTCGCACAGTGATCTAAGAT
CAACCACGTATCTATGCGAACAATAACCAGAGATTGACCGGGAGCCATCG
AGCCTAGGCTAGCGAGTTACTGTTCACAAAAACAAAAACCTTGTTTAAGA
TCATTTTTTCCACATCTCTGCCATCACTTTTTGGATTTAGGCTTTTTTCA
ACCTAGATTTTTGAAAATTCCAAGCCATGGAAAATGCAAAATTTCCAACC
TTGGAAAATGTCCCACATTTCCAGATTGGATTTTTCCATTGGATTTTATC
TTTTTTCCAACTAAGAAAACTTGAAATTTCCAACCTTGGAAATTGAAAAT
TTTTTCCTGTGATAGATACGTGGATTTCACTTTCCAGTAATATGCTTTGC
TAATGCGTCATCAAAAATATAGAACCTGAAAAAGTTTCTTCAAATAGCCA
GGAAATGTTTTTCTCCCAAAGACAATACATTTTTTCAAAGAAGACATCGA
GTGAAATAAATGTAGTAGGAAACCCTATTGAAGGCCTGGGAAATGTAAGG
GTATCTTTAAGTTTTTTGCAAAATATCAAAATAATTAGATTTTTCAATAA
GTGGAGTGTGACACTTTTTCAAGTCTTATTTTTATGGTCTTAATGTGGAC
AAGCGTGGATAGTGTGGAGGTATGAAGTTGTAGGCACTGGTAAGTTAACA
ACCATACACGAGGATGCTGACATCCACACTAATTACTCTGGGGTACCTAA
TAGCCGGTGGGTTTGGAATAAGCGGGGGGGGGGGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGGGGGGGGGGTATGGAAAAAACCTCAAAACTTAATAAGCGGGAG
GGTTGGAATAAAACTGTCCTGGGTGGAAAATTTTTGAAAAGGAGGCTAAT
ACAGCAGAATTAGGACAAAAGAGGAAACTTTCAAAAACATTTTCCCAAAA
GTTAATTAGCGGGGGGCGGGGGGCGGCTATTAGGTACCCGAGAGTAATGG
ATTCGTGCTCCTCGGGCACTCGATCAGGAAACTACCGTATGTATGGCCAA
AATTAGGTCTTTAAAATCAGACCCTACAAAGAAAATTCAGCCAAATTTTA
GTAAATTCAGGCAAAAAGTCGCCTCTGCATTTTCTTGGAAATTTTGTACC
TTTAAAGAAATTATTGGGCAAATAATGGTGAGATTTTGGAATACTTTGCC
CAAAAAGCTTTGTTCTTCACACTTTTTATACTCATGCAAGGTATTTTCTT
GCACTTTTCCTAATTTTGACACTTACATGTTATAATGCACTTTGGGAAGC
GTAAAAACGTACCCTTAAGGGTCGCACTCTATGGTAGGTCTCTTACCTTG
AGTGCCCTCCCCTCCAGGTCCTATATTATCTATGATTCAGACTTCTCTAA
ATGGAGCATATATGTAGCAAGGACAATGATTATACTTTTGATACTCATCT
ATTAGCTGTCAGCGGACCCGGCACTTTGTCTCCTCTTCTAAACTCATCAG
AACTTAGTCTCCTGTATCTCAGTTACCGAAAGCAAAAAACCTTTTAGTAT
ATGATCAAGGATTTATTATACACTGGATATACAAGTAACAGATTTTTGCC
GATTTCTCGTGTACTAGCTATGTCCGCAGTAATGATAGTATTGTTCACTC
TCCTTCCCTCATTAAATGATTTTTCGAAGCATTTTTATTGCATTTCATAT
CGAAAATCACTCATCCAATTCCCAAAAGAGATTTAAAACTTTCCTGTGAG
AGTCGGATTCTTCCACTTAATTGATAATAATAAGTCGTTATGACGTTTCA
AGCTGTGAGAAAGATGCAAAAGACGTGTTGTATATAAGAAATTTAATGTT
GACACCGGAAATTTTCAAACTTCAACCTAAAAAAAAACACCTTGCCACCA
CGTGCCTCCAAAGGATTTTCATACCACAGTGGAGCCAAGACACTCAAGTC
TTATGTATGTTGATTTCAGCTCTTACGAGGACAGTCTTGGAAAGATATTT
CCGATTGAAAACTTTGTGTCACTATAAGCATTTTGGCTGAATTTCTTGTC
TAATGATGTTTTTCTCACATTAGATTTCACAAATGTATGTGCCTTGGAAT
ACTCGACTTACTTTCAAACTTTTTTTTCTGCAAATGTACAGAAAGAAAGA
GCTAGAGAACTTTTTAAAAATAAGACTGATAAACATTTTTTTAAATCAGA
CACCTTCGAGCCGCCATGACAGTTGTCCTTTGCGGACAAAGCTAGAACAG
CAATTGTTTTCTGAAACAATGAAATTACAATGATCGCTATCCCTCGTTTT
TTGAGTCGTTTATCCAGTGTATAATAAATCTTTGCTTTCTCGGACCAACC
AACTACCAACCATCATTTTTTTCGGTCCCATGAACTACCCACAAAGGAAC
GAGACGCACTAGGGCACAAGAAGCACGCAATTGTCTGAACACCAATAAGA
ATGGAAAGTCGCAAGATTCCAAACGAGCATGCAATGTCAAATAATGACTG
CATACTCTTAAACGAACGTTACGTCACCAAGTGACGATGATTCTTTCTTA
AAGGGAATACGTTTTCTCTTTATTCCCATAGATCGATAGCCCACTCTCAA
CCCTTGGGAATGCAGTGAGCTGTAAACCGTTTTGGAAGCCCACGGTGAAT
TTGTTAGAGTAGTTAAACAAGCAAATGAGGAGTGAGAGAACTTTGAATAT
TTTACGATAAATTTTCCAGCTTAAATTAATATAATTATATAAATTATTAT
TAAATTAAATATTTTATTGAATATAATTGCTAATCAGTCAAATGATGCAA
AAATTATTAAACTCAAGAGCTTTCTCAACTTTTCACAGTGCTAACCACTT
CATTGGATAGTTCATCATGCATTTATTATGCAATTCTTGTAAAATCTTTT
TTTTTTTTTTTTTTTTCACGAGTTGAGTTTTTAATTTGAGTCACCAACCA
TATACATGTGAGTCATCGAATTCGCAATACACTCACATTCACAGCTGACA
TTCAGTGGTTGCTGGTAGCTTTCCCAAGTGTTCGAAACAGAATCCACTAA
TTTCTTGAAGGAGTAATAGATGACCTTCTGCGTGCATGTTCCATCTCCAC
TAATGCATATGGTCGCGCTATCAGAACATTCAACGCTATTCGCGTACTGC
GGAACTCTAAAAAAGAAAACAGTTACATGAAAGACAAAAACTAGCAATCG
TCGTCATAACCTTCACCTTCTAAATTCTAGCAGGGGGGTGCTTATTTGTC
CCCCTACCCCAACGAGGTAGATATGGTGTAAGGTATACAGTTAAGCATCA
ATGAGACGCACCAGGGCAAATATTCATACAAAAAAGAAGAGAGAAATAAA
AGCAAAGCATGCCAAGTCTAATCTTCAAAGGAAAAGAAGATGAATGAGGA
AGGAAAACTTACACACTCTCTCCGAAATCCACCGTTTTGTAGCAAGTTTC
ACAAAGCAGGATAGTATCGCTCGTACTCCCTTCCGAACCTTCAACGAAAC
ACGACCCTTCATTAGAATACGTATACGACAAAGATCTACGCATGCGCACG
ACGTCTAAATTCTGTACGAGGCTTCTTCGTGAGCGATGATGATTGGAGGT
TTTAGGTTGGTCGTTTTGTGGTTGGTTTGAACTTCTCTTGAATCGATTCT
CGCCTTCTTCATCTTCATCTTCCTCTAAATTTTCATCTTGTTCTTCCTCT
GCATTCTCATCTTCCAAATTATCTTCCAGAATATGTTTGATATCTTCCAA
TTCCTCCAACGAGGGTTGGATTCTTATTAATTCTTCTCTCTTTCTCTTCT
TCATCAAAGCTTCTTGTCTTTTCTTCTTCCTCTGTATCGCTAATTCTTCA
CGCTTCTTTTTCTGTTGTTGTTTTCGTCTACGAACTTTGCGGATGATTAT
TTTTTTTGATTTTCCGCAGGGCTGCACTTCTGGTTTAATACCACCCAGCG
TTTTAATTGCCGTGCATTCCTGGATTTCTGGATCTAAGTCTTCGAAAAGT
AACATGTCCAATATTCTGGCCCATCTGGTGATCACTTGCACGTCTTTACC
TCTTGATAAATGGTTTTGAGCTTTCGCCAGCGTTCTTTCAGCATCCGTTC
GGTTTTTAGGATTCGGTCGATCTTCACGACGCAGTTCAGTTCGATTACGT
GGTGGCCCTTTTGTGTCAGTATAGTTTTCCAATCTTTCTTTACTAAAGAA
CAAGAAATCAGGTACTGACGAGTCTTCGCCACCGCTTAGTGATTCAAGAA
GGTTGACAAGTTCTTGTTTGCTGTACTTGATGTCCAAGGTGTTGGATGAT
GTGTCTTTAGCCTGGAGGACCAACAGCAGCCAGATCGATATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060960-exon-scaffold_350-1575043694:51485..51718 | TCONS_00060960-exon-scaffold_350-1575043694:51485..51718 | Clytia hemisphaerica | exon |
| TCONS_00060960-exon-scaffold_350-1575043694:43575..44320 | TCONS_00060960-exon-scaffold_350-1575043694:43575..44320 | Clytia hemisphaerica | exon |
| TCONS_00060960-exon-scaffold_350-1510915933:51485..51718 | TCONS_00060960-exon-scaffold_350-1510915933:51485..51718 | Clytia hemisphaerica | exon |
| TCONS_00060960-exon-scaffold_350-1510915933:43575..44320 | TCONS_00060960-exon-scaffold_350-1510915933:43575..44320 | Clytia hemisphaerica | exon |
| TCONS_00060960-exon-scaffold_350-1491911889:51485..51718 | TCONS_00060960-exon-scaffold_350-1491911889:51485..51718 | Clytia hemisphaerica | exon |
| TCONS_00060960-exon-scaffold_350-1491911889:43575..44320 | TCONS_00060960-exon-scaffold_350-1491911889:43575..44320 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:43575..51718 - |
Blast
The following BLAST results are available for this feature:
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