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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060969 ID=TCONS_00060969|Name=TCONS_00060969|organism=Clytia hemisphaerica|type=transcript|length=2103bp
acgtcctgttgaataattatgtagtccagccataaaaacaatgatagggc
catcatgcataattactgtatcatgcatattgtaaataattatgcatggt
tttatcattgtttttctactggactacataattattcaacagggtggcct
ctttgaaaaaaggtctataacaagtgtgtaacttgcagCGCGCGAGTGAG
GTTAAACGCTCCAtcttttgccactaatttgtttttcttcgtTCCAGTAT
CCAGACCCGTGTGTGTTGTTCCACTacaaattttttcatattttgcttta
aaagcctactctgtGAGAAAGAGAAATCGTAGGTTTTTTAATAcgctgtt
cattaactcaaatcaaatgactttggaggtttggtgaaatgaaagccaaa
ttgccgtcccatgttttgtcagatagtcccaagccaagttagagcagttg
gcgGTAATTTTTTTGCTACTATAGGGTACGATGTCATGTTGTTggatata
attaaaaactcAAGCACAACAATCACATCATATATCACGATAACTCCACG
TTTCAATGGATGCAAgggaaacaacaacaataactAAAGTTTCACGCTCT
CCCATCCATCAAGTGATAACTTGTTGAACATAGGTCCATGGACCTTTGGC
TAGAGGTAAAATCTGTCTAGTAGGAATGGAAGATGAGCTGGGTGTTGTAG
ACACTGTGGACAACTCAAGAGCAAGGGCCAACAGTGACAGgaGGACATGT
TGGGTTTGCTTTGGAACAGACGAGGATGACCCAGGAGCGAAATGGATCAA
TCCATGCAGGTGTCGAGGTACCACCAAGTGGGTACATGATACTTGCTTAC
AAAGGTGGTTTGATGAAAAACAACATGGAAATCCAGCAACTCAAGTCTTT
TGTCCACAATGTAATACGGCATACACCATTTCCTACCCTCCACTCAGTCC
ACTTCTGGTATTGATTGACTATGGAGAGAAAGCAGCCAACCGAGTGGCAC
CTGTAGCAGCGGCTGGAGCAGTAGTTGGTTCACTTTATTGGTCTGCTGTG
ACTTTTGGTGCTGTTACAGTAATGCAAATACTTGGACATAAGGAAGGACT
GCAAGTTATGGAGGGTGCAGATCCTCTATTCTTGCTTGTTGCTTTACCTA
CTATACCCCTGGGGTTGATATTAGGAAAAATGATACGCTGGGAGGATAAA
GTTTTACACTTGTGGAGAGAATATTCTCCCAAATGGGAATTCCTGAATAA
AATATTTGGTGGAGGAGAAGAGAATAATGGGGCAATACGACGACAGCCCC
TTGAGAATGATAATCAAATAGATTTTGTGAACTCGACACGTGTTTTGTGT
GGTGCTTTGATGTTACCGACTTTTGCCACCGCTGTTGGCAACTACCTTTT
CAAAAGAGTTCAATCACCATTGAAACGAACTTTCATGGGTGGAGTGTCGT
TTATCTTTGTGAAAGGAATGATCAAGATCTACTACAGGCAACATCAATAC
GTTCGTTTGGCCAAGCGCAAAATCGAGGATTTCCAAGGGTCGACCAGCGT
CTAAAACTTGTAAGCAACAGTACACAGATAGTTATAAGAAGCATTGTATT
GAGAACTGGTAGGTGATTTTCATGAGCCTGGATTTTGTGAGATTTGTATA
CAAAGACTACAAACATCATATATCCatttcgaaaaaagaaaaaaaaaact
tactgtCATAAGATATTTGATTGGTCATAATTatctttaaaaaggtttat
ttgTAAATAGAGTACTAGAATTTGAGCCAGTAAGGTCCCATctccaaaaa
atgtttatatgattatttgttttttttgctgaattttgcaATACACAAAC
CTAGTGAACCTCTACAAATAGACAAGAGACCTGAGAAACTCTTTCACCCT
CAAATTTCGGAAAGCTTTTCGAAATTTCACATATCCTCAAAGACAAAACC
ATTATCAAATTTGccgaaaatatttacaaaaagatacacttttagatttt
ttataaaatgaaaacaaccgAAAGTATTTTACTAtctaaaagaaaagttt
tgtagATAATCTAATTTTTGGGAGCGATAGCCCCTGatacgggggggggg
ggg Run BLAST on NCBI transcript from alignment at scaffold_350:125217..131179- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060969 ID=TCONS_00060969|Name=TCONS_00060969|organism=Clytia hemisphaerica|type=transcript|length=5963bp|location=Sequence derived from alignment at scaffold_350:125217..131179- (Clytia hemisphaerica)
ACGTCCTGTTGAATAATTATGTAGTCCAGCCATAAAAACAATGATAGGGC
CATCATGCATAATTACTGTATCATGCATATTGTAAATAATTATGCATGGT
TTTATCATTGTTTTTCTACTGGACTACATAATTATTCAACAGGGTGGCCT
CTTTGAAAAAAGGTCTATAACAAGTGTGTAACTTGCAGCGCGCGAGTGAG
GTTAAACGCTCCATCTTTTGCCACTAATTTGTTTTTCTTCGTTCCAGTAT
CCAGACCCGTGTGTGTTGTTCCACTACAAATTTTTTCATATTTTGCTTTA
AAAGCCTACTCTGTGAGAAAGAGAAATCGTAGGTTTTTTAATACGCTGTT
CATTAACTCAAATCAAATGACTTTGGAGGTTTGGTGAAATGAAAGCCAAA
TTGCCGTCCCATGTTTTGTCAGATAGTCCCAAGCCAAGTTAGAGCAGTTG
GCGGTAATTTTTTTGCTACTATAGGGTACGATGTCATGTTGTTGGATATA
ATTAAAAACTCAAGCACAACAATCACATCATATATCACGATAACTCCACG
TTTCAATGGATGCAAGGGAAACAACAACAATAACTAAAGTTTCACGCTCT
CCCATCCATCAAGTGATAACTTGTTGAACATAGGTCCATGGACCTTTGGC
TAGAGGTGATGTCATGTCGGACACATATTTTTGAAATTATAATGTTTTTG
CATAGAACATAGTGGGCAGAGGGGTATCAAGCCCCCCCCCTTAAAAATGG
CACCCCCCCCTCTTTTAGCTCAACCCCCCTCTTAAAAATGAAAATTCCTC
AACCCCCCTCTTTTTATTCAACCCCCCTCTTTTTCCCAGGTTTAAGTTCA
ACCCCCCTCTTTTTTTCGACCATTTGCGGTCGCAGCTGTCTTGCAAAGGT
TGAAAAAGCAACATACTCCATCAAGAGTTGTAGAAACAGAGTTTTTGCTT
CATTCAAATGAATGGAAATATAATAATTGTTGAGAAATCTAAAAATGAAT
GGAAAACACTCTTTTGCAAATTGCCAAATCTTCCAAGCCCCCCCTTAAAA
AATTAACCCCCCTCTTTTTGTCCAAGCCACCCCTTTTGTGAAGGTGGGGG
CTATGTTTCTAGAATTTAGCCGGGGGCTATTTTCCTTAGCCCCCCCTGAA
AAATGCTGGGGGCTGGACCCCTCTGCACACTATGAGTTTGTTGAACAACC
ATTAAAAGAGTGCTCAATACTCTTTGTAGAGCTAATTCATAAAGTTTTTT
TAAAATTATTTAGGTACCATCCATGGTCTATTCATATGGTCTATTCATAT
ATCACTGTTGAAAGTCTAAACAACTATTTTCTGAAATGTTATTTTAGGGA
CCTTTCAAAAAGTATGTATGTTCAAATACAAGCAAAATTCCACCCTTCTT
CCTTGTGCGTTTGTGTACGCTTTTGCAACTACCTCCTCCTTCGTGTATGT
ACGCTTTTCCAAGGACCCCCCCCCTTCAAGGAAAATTTTTTGAAATGATA
GCAAATTTTATTAGCAGCTCAACAAAAACCATAAAAAACAGGGAAGAAAA
TCATAAGGTAGCCTAGATTCACCAGAAAAAGTTTCAGCCCATTGAAAACT
GTGAATTTATATATAGTTTTTTGAGAGCTTATTAGGTGGTTTGAGTATAT
AGTTTTTTTACCTAAATTTTTTTAATCCCTTTAAAATATGAACACTTAGG
TCCCAAAATTCATAGCGTCAGCCCCCCTGCTGGACCTATGTAATTGGGGC
GAGCTAAAATCTCATCACTTAACGTGGGGGCTAAAATAATTCAGCTTGCT
TCAATTACTCAAGTTGAAGCTCATGAATCTTAAAAATTTTTGTCTGCGGC
GCAATATTTTTATAGAAAGTGTGCAAAATATTTTATCTTAAACTTAGAAC
TGAACGCAATTTACATTGGAAAACCCTTTTTTACTGGATCAATTTTTTGA
AAGTGTCTAGGGTCAAAAGTCCTGGGGTCCCCGCCCCATAATTCTTTGGG
GGGGGGGACTTAAAACTCAGGGGGATCTAATTTTTGCCTAAGACCTAAAC
CCAGGCTGCCGCTATGAAAATTAGGGTTGCTCTGAAAGTTATCTCTGGCC
TTCTTCCTAATTTCAATTCATAATATTAGGGGCAGGAAGGAAAGAATTTG
CATTGCACATTATAAGTATTATCACTGATCAAGTCAAAAGTGGACTAAGT
GAACAAAATTTTCTGATGAATACTACTAGTACTAGAATTTTTTTTCTCTC
TCCCTTTATGATTGATTTTCACAGAAAGTGGTCCCGACAGTGTGTTTCAA
ACAAACTGACCTAGTATACTTTAAGTGTACAAAGTTGGGTTAACAGAAAC
TTTCACAATTCTCACAATTCTCTTAGGCCCTTTTCGTGAAATCAAATAAG
CTTGAAATTTATGCTTTTGTCAAGTACCTTAAAGAACCTGATAATGTTTC
AAAACCACAATGAATTTGAACCTATTTAAAGTACTGTTTTAGCCCTATGC
CCTAGGACCTTTGAATTTAAATGACAAAATTTTTTTATCATGCTCAATGA
TCACAATTCTCTAACTCTAAAATTTGTGATTCTGTTCACTGTTTGACATT
GTTGTTATGGATTATTTAGGTAAAATCTGTCTAGTAGGAATGGAAGATGA
GCTGGGTGTTGTAGACACTGTGGACAACTCAAGAGCAAGGGCCAACAGTG
ACAGGCAAGAGATATTTTTTATACACGTCAATTTTAACCTTAAAAACTTT
AAAGTTCGAAACTATGTTGTTTGAGTGAATTTATTCGGGTCGAATATATC
AGTATTACTGATACTGTCTTTTTGACGTTTTTTAACTGTTTTTTATAATG
ACTTTAGACTTTATACCTCCATATCTCGATAACTACTTTTCCAAAATTAA
AAATGATACATCAAAATTTAAGTTTGCCTTTCCTCTTTACCATGAAAAAA
GAATTTAGTTAAAATTCAACTTTTTCGGACATAGTTACCCTCCAAACTCT
TATACTTTTTCGTGGTTCACCCGGTAAATGGAAATTTTGATGATTTTAAT
TTTCAGGAGGACATGTTGGGTTTGCTTTGGAACAGACGAGGATGACCCAG
GAGCGAAATGGATCAATCCATGCAGGTGTCGAGGTACCACCAAGTGGGTA
CATGATACTTGCTTACAAAGGTGGTTTGATGAAAAACAACATGGAAATCC
AGCAACTCAAGTCTTTTGTCCACAATGTAATACGGCATACACCATTTCCT
ACCCTCCACTCAGTCCACTTCTGGTATTGATTGACTATGGAGAGAAAGCA
GCCAACCGAGTGGCACCTGTAGCAGCGGCTGGAGCAGTAGTTGGTTCACT
TTATTGGTCTGCTGTGACTTTTGGTGCTGTTACAGTAATGCAAATACTTG
GACATAAGGAAGGACTGCAAGTTATGGAGGGTGCAGATCCTCTATTCTTG
CTTGTTGCTTTACCTACTATACCCCTGGGGTTGATACTAGGAAAAATGAT
ACGCTGGGAGGATAAAGTTTTACACTTGTGGAGAGAATATTCTCCTNTAT
TTTTTATACACGTCAATTTTAACCTTAAAAACTTTAAAGTTCGAAACTAT
GTTGTTTGAGTGAATTTATTCGGGTCGAATATATCAGTATTACTGATACT
GTCTTTTTGACGTTTTTTAACTGTTTTTTATAATGACTTTAGACTTTATA
CCTCCATATCTCGATAACTACTTTTCCAAAATTAAAAATGATACATCAAA
ATTTAAGTTTGCCTTTCCTCTTTACCATGAAAAAAGAATTTAGTTAAAAT
TCAACTTTTTCGGACATAGTTACCCTCCAAACTCTTATACTTTTTCGTGG
TTCACCCGGTAAATGGAAATTTTGATGATTTTAATTTTCAGGAGGACATG
TTGGGTTTGCTTTGGAACAGACGAGGATGACCCAGGAGCGAAATGGATCA
ATCCATGCAGGTGTCGAGGTACCACCAAGTGGGTACATGATACTTGCTTA
CAAAGGTGGTTTGATGAAAAACAACATGGAAATCCAGCAACTCAAGTCTT
TTGTCCACAATGTAATACGGCATACACCATTTCCTACCCTCCACTCAGTC
CACTTCTGGTATTGATTGACTATGGAGAGAAAGCAGCCAACCGAGTGGCA
CCTGTAGCAGCGGCTGGAGCAGTAGTTGGTTCACTTTATTGGTCTGCTGT
GACTTTTGGTGCTGTTACAGTAATGCAAATACTTGGACATAAGGAAGGAC
TGCAAGTTATGGAGGGTGCAGATCCTCTATTCTTGCTTGTTGCTTTACCT
ACTATACCCCTGGGGTTGATATTAGGAAAAATGATACGCTGGGAGGATAA
AGTTTTACACTTGTGGAGAGAATATTCTCCCAAATGGGAATTCCTGAATA
AAATATTTGGTGGAGGAGAAGAGAATAATGGGGCAATACGACGACAGCCC
CTTGAGAATGATAATCAAATAGATTTTGTGAACTCGACACGTGTTTTGTG
TGGTGCTTTGATGTTACCGACTTTTGCCACCGCTGTTGGCAACTACCTTT
TCAAAAGAGTTCAATCACCATTGAAACGAACTTTCATGGTAAGTTTTAGG
GCGATCATTTCTGTTTTTTAAAACTTTGTGATTTAATTGATTTGTTGCTT
TCAGGTGGAAAGTTCTAGGTAAACTATAGTTGTGTTCGTCTGTCAGCCAA
AATTTGTTAGATTTGGACAGTAATGTAAATATCAGAGGGGGATGCTCAAA
GTGCAAATTGAGCTTTAGAAGATTAATTTAAATAAGATTTGTTTCTGGGA
TGTTCGGGTTGTTAATTTCCATGCAATACTTTAGGCATACAAACTTTCGC
GAGCAGAAACTTCCGCGATTTTCGCGAATTTTGGCCTTTTTCGCGAATAT
AAATGTCTTTAAAAATTCTAGGAAAAATTCGCGAAAAATTCTTGACAAAA
TAGTAAAATCTGTAAAACTTCAAACTTTGAAGAAAATGTAACTTTTATGG
CAATTTTTAGCCTGCTAAAAGACTAATAAGTCAAAGGACAAAGGTTTTAA
GTCAATCCAAGGCAAGAAGCATTTGTCTCTCTAAGCCATTTTTTCATGTG
AAAATTCTCAATTTTACGTCTTGATTCGCGAAAGTTTATGCTCGCGAAAA
ATATTTTTTCGTCAATTTCGCGAAAGTAAATGTCGTCAATTTCGCGATTT
TTCGTCCTCGCGAAAGTTTTTGCTCGCGAAAGTTTGTACGTCTAAAGTAG
TTTCTTATTTGTGTTGATTTGATATATTTGCTTTATTTGCGTTAAAGGGT
GGAGTGTCGTTTATCTTTGTGAAAGGAATGATCAAGATCTACTACAGGCA
ACATCAATACGTTCGTTTGGCCAAGCGCAAAATCGAGGATTTCCAAGGGT
CGACCAGCGTCTAAAACTTGTAAGCAACAGTACACAGATAGTTATAAGAA
GCATTGTATTGAGAACTGGTAGGTGATTTTCATGAGCCTGGATTTTGTGA
GATTTGTATACAAAGACTACAAACATCATATATCCATTTCGAAAAAAGAA
AAAAAAAACTTACTGTCATAAGATATTTGATTGGTCATAATTATCTTTAA
AAAGGTTTATTTGTAAATAGAGTACTAGAATTTGAGCCAGTAAGGTCCCA
TCTCCAAAAAATGTTTATATGATTATTTGTTTTTTTTGCTGAATTTTGCA
ATACACAAACCTAGTGAACCTCTACAAATAGACAAGAGACCTGAGAAACT
CTTTCACCCTCAAATTTCGGAAAGCTTTTCGAAATTTCACATATCCTCAA
AGACAAAACCATTATCAAATTTGCCGAAAATATTTACAAAAAGATACACT
TTTAGATTTTTTATAAAATGAAAACAACCGAAAGTATTTTACTATCTAAA
AGAAAAGTTTTGTAGATAATCTAATTTTTGGGAGCGATAGCCCCTGATAC
GGGGGGGGGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060969-exon-scaffold_350-1575043694:130525..131179 | TCONS_00060969-exon-scaffold_350-1575043694:130525..131179 | Clytia hemisphaerica | exon |
| TCONS_00060969-exon-scaffold_350-1575043694:128476..128560 | TCONS_00060969-exon-scaffold_350-1575043694:128476..128560 | Clytia hemisphaerica | exon |
| TCONS_00060969-exon-scaffold_350-1575043694:126592..127288 | TCONS_00060969-exon-scaffold_350-1575043694:126592..127288 | Clytia hemisphaerica | exon |
| TCONS_00060969-exon-scaffold_350-1575043694:125217..125882 | TCONS_00060969-exon-scaffold_350-1575043694:125217..125882 | Clytia hemisphaerica | exon |
| TCONS_00060969-exon-scaffold_350-1510915933:130525..131179 | TCONS_00060969-exon-scaffold_350-1510915933:130525..131179 | Clytia hemisphaerica | exon |
| TCONS_00060969-exon-scaffold_350-1510915933:128476..128560 | TCONS_00060969-exon-scaffold_350-1510915933:128476..128560 | Clytia hemisphaerica | exon |
| TCONS_00060969-exon-scaffold_350-1510915933:126592..127288 | TCONS_00060969-exon-scaffold_350-1510915933:126592..127288 | Clytia hemisphaerica | exon |
| TCONS_00060969-exon-scaffold_350-1510915933:125217..125882 | TCONS_00060969-exon-scaffold_350-1510915933:125217..125882 | Clytia hemisphaerica | exon |
| TCONS_00060969-exon-scaffold_350-1491911889:130525..131179 | TCONS_00060969-exon-scaffold_350-1491911889:130525..131179 | Clytia hemisphaerica | exon |
| TCONS_00060969-exon-scaffold_350-1491911889:128476..128560 | TCONS_00060969-exon-scaffold_350-1491911889:128476..128560 | Clytia hemisphaerica | exon |
| TCONS_00060969-exon-scaffold_350-1491911889:126592..127288 | TCONS_00060969-exon-scaffold_350-1491911889:126592..127288 | Clytia hemisphaerica | exon |
| TCONS_00060969-exon-scaffold_350-1491911889:125217..125882 | TCONS_00060969-exon-scaffold_350-1491911889:125217..125882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:125217..131179 - |
Blast
BLAST of TCONS_00060969 vs. Swiss-Prot (Human)
Match: MARH5 (E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens GN=MARCH5 PE=1 SV=1) HSP 1 Score: 316.235 bits (809), Expect = 1.249e-101 Identity = 151/264 (57.20%), Postives = 194/264 (73.48%), Query Frame = 1
Query: 742 RTCWVCFGTDEDDPGAKWINPCRCRGTTKWVHDTCLQRWFDEKQHGNPATQVFCPQCNTAYTISYPPLSPLLVLIDYGEKXXXXXXXXXXXXXXXGSLYWSAVTFGAVTVMQILGHKEGLQVMEGADPLFLLVALPTIPLGLILGKMIRWEDKVLHLWREYSPKWEFLNKIFGGGEENNGAIRRQPLENDNQIDFVNSTRVLCGALMLPTFATAVGNYLFKRVQSPLKRTFMGGVSFIFVKGMIKIYYRQHQYVRLAKRKIEDF 1533
R+CWVCF TDEDD A+W+ PCRCRG+TKWVH CLQRW DEKQ GN +V CPQCN Y I +P L P++ ++D ++ ++ P AAAG +VGS+YW+AVT+GAVTVMQ++GHKEGL VME ADPLFLL+ LPTIP+ LILGKMIRWED VL LWR+YS K + LN IF G + R P E + D V++TR+LCGAL+ PT AT VG +F V S L+RT +GG++F+ +KG K+Y++Q QY+R A RKI ++
Sbjct: 12 RSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVTVMQVVGHKEGLDVMERADPLFLLIGLPTIPVMLILGKMIRWEDYVLRLWRKYSNKLQILNSIFPG---IGCPVPRIPAEANPLADHVSATRILCGALVFPTIATIVGKLMFSSVNSNLQRTILGGIAFVAIKGAFKVYFKQQQYLRQAHRKILNY 272
The following BLAST results are available for this feature:
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