|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060977 ID=TCONS_00060977|Name=TCONS_00060977|organism=Clytia hemisphaerica|type=transcript|length=1126bp
tttcttttttgatttttgattttgattattGATTTGTAATTCATTTTTCA
GAGCatttgaaataaataagaaagaaaaatgggtcGATGTCGAACTATTT
TTGTTGGGTTGGTAACTGGCCTGTTAGCTTTTGTCTTCATTACGGCAGGG
GCTATCAAACTGACACCTAAAATTTCTGTGCAAGCACACAAGAGAATGTA
TCGAGATTTCGTTCAGTATGCTAAACTTCATCCAGCTGTTAAATTTGGTT
ATGATATTGATCCCAAGAAATTCATGCCACAAGTTGGTGTTGTGGAAGTC
ATCGCTGGCACTTTTCTTGTTGTTGGACCACGATCGACACGCATGATCTG
TTGTTTAGTTCTCTCCTCTCTCATGGTTGGTGCACTGTATTTTGTAAAAG
CTGCGAATAAACCTCGGGAAGAATGGGTTGTTCCTGCTGTGGTTCTCTTC
TTAACCTTCATTCGATTCAATTTATTCTTGTCACCCACTGTCATTGTCAC
TgagaaggaaaagaagaaaaataaaaaagagaagaaagcaAAGAAGGAAC
AATAGAATGTTTAGaacttttggaattttttaatttgtgcatttctaaag
attttactttataaCTACACAAATATACATTTTATAGGGTTTTCGGTTTT
CGTTtgctttttatttaacttttaaTATTTGATATATCACATTTAGCATT
TAACTCGTATTTATCTTACAGTATCACACATCATTATCTTAGAATGTTTC
AGTAATTTTTGCTATGTCTTTCCGTGTACCCATCTTTTAAAATGTATTCA
ACCGCCTTGATATTTTTGTATAAATCATCACCTGTTTGTTAAAGATGAAC
CGCCGAATGTGAGGGAACCCACAACGCCAGATCTTGATATGTCCTgtttt
ttttgggattttcacgagattttatcattagattTAGTAAATTATAGTAC
CATATTCTCTAAAActtataaatttttatatatcggCTCAAAATTTGGTA
GAAATTATTAGTATATTATACTGTAGGTAGGATTTAATTTCTAGATctag
ctttttgaaaaatatatatctgacgtcaatttttttctcaaaacttccTA
GATCGACTATGTAAGGGTTAAATGCT Run BLAST on NCBI protein sequence of TCONS_00060977-protein >TCONS_00060977-protein ID=TCONS_00060977-protein|Name=TCONS_00060977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MGRCRTIFVGLVTGLLAFVFITAGAIKLTPKISVQAHKRMYRDFVQYAKL
HPAVKFGYDIDPKKFMPQVGVVEVIAGTFLVVGPRSTRMICCLVLSSLMV
GALYFVKAANKPREEWVVPAVVLFLTFIRFNLFLSPTVIVTEKEKKKNKK
EKKAKKEQ Run BLAST on NCBI transcript from alignment at scaffold_350:189202..190896- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060977 ID=TCONS_00060977|Name=TCONS_00060977|organism=Clytia hemisphaerica|type=transcript|length=1695bp|location=Sequence derived from alignment at scaffold_350:189202..190896- (Clytia hemisphaerica)
TTTCTTTTTTGATTTTTGATTTTGATTATTGATTTGTAATTCATTTTTCA
GAGCATTTGAAATAAATAAGAAAGAAAAATGGGTCGATGTCGAACTATTT
TTGTTGGGTTGGTAACTGGCCTGTTAGCTTTTGTCTTCATTACGGCAGGG
GCTATCAAACTGACACCTAAAATTTCTGTGCAAGCACACAAGAGAATGGT
AGGTGAAAGGTGTTATTTTTCTTTTTAGTTTAATACTTACAGTGAAATGT
TAAAACTTAGTTTGAAAAGCTCCTTAAAATCTACCGAATGCGAAATTTAG
GTGAAAGCTATATAGAATTGTGAAAAGAAGTACATTTAAAAGAATTGGTA
TTCTGAAATAAGCCAAGAAATTCTAAACTTCTTTAGTAAGTTAAGGATTT
TTTCAAATCTTAGTTGAACTGATATATCATTTGTCAGATGAAATCTACTT
TAGGCGTACAAACTTTCACGAGCAGAAACTTTCGTGATTTTCACGAAAGC
AGATGTCTTAAAAATTCTTAACAGAGCAATTCGCGAAAGTTTATGTTCGC
GAAAAACATTTTTTTTCTCATATTCGCGAAAGTAAATGTAAATTTCACAA
TTTTTTTACCTCAAAAATTTCTGCTCGGGAAAGTTTGTACGCCTAAAGTA
TTATGTTATTTCACCGTTTTCTTGTATTGAAATTTAATGACCCAATTTAA
TACACAAGAAAGGCCCCTTTGTCTACCATTGTTATGTTTTGATTAACCAA
ATTCTTAAATATTTCAGTATCGAGATTTCGTTCAGTATGCTAAACTTCAT
CCAGCTGTTAAATTTGGTTATGATATTGATCCCAAGAAATTCATGCCACA
AGTTGGTGTTGTGGAAGTCATCGCTGGCACTTTTCTTGTTGTTGGACCAC
GATCGACACGCATGATCTGTTGTTTAGTTCTCTCCTCTCTCATGGTTGGT
GCACTGTATTTTGTAAAAGCTGCGAATAAACCTCGGGAAGAATGGGTTGT
TCCTGCTGTGGTTCTCTTCTTAACCTTCATTCGATTCAATTTATTCTTGT
CACCCACTGTCATTGTCACTGAGAAGGAAAAGAAGAAAAATAAAAAAGAG
AAGAAAGCAAAGAAGGAACAATAGAATGTTTAGAACTTTTGGAATTTTTT
AATTTGTGCATTTCTAAAGATTTTACTTTATAACTACACAAATATACATT
TTATAGGGTTTTCGGTTTTCGTTTGCTTTTTATTTAACTTTTAATATTTG
ATATATCACATTTAGCATTTAACTCGTATTTATCTTACAGTATCACACAT
CATTATCTTAGAATGTTTCAGTAATTTTTGCTATGTCTTTCCGTGTACCC
ATCTTTTAAAATGTATTCAACCGCCTTGATATTTTTGTATAAATCATCAC
CTGTTTGTTAAAGATGAACCGCCGAATGTGAGGGAACCCACAACGCCAGA
TCTTGATATGTCCTGTTTTTTTTGGGATTTTCACGAGATTTTATCATTAG
ATTTAGTAAATTATAGTACCATATTCTCTAAAACTTATAAATTTTTATAT
ATCGGCTCAAAATTTGGTAGAAATTATTAGTATATTATACTGTAGGTAGG
ATTTAATTTCTAGATCTAGCTTTTTGAAAAATATATATCTGACGTCAATT
TTTTTCTCAAAACTTCCTAGATCGACTATGTAAGGGTTAAATGCT Coding sequence (CDS) from alignment at scaffold_350:189202..190896- >TCONS_00060977 ID=TCONS_00060977|Name=TCONS_00060977|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_350:189202..190896- (Clytia hemisphaerica)
TATCGAGATTTCGTTCAGTATGCTAAACTTCATCCAGCTGTTAAATTTGG
TTATGATATTGATCCCAAGAAATTCATGCCACAAGTTGGTGTTGTGGAAG
TCATCGCTGGCACTTTTCTTGTTGTTGGACCACGATCGACACGCATGATC
TGTTGTTTAGTTCTCTCCTCTCTCATGGTTGGTGCACTGTATTTTGTAAA
AGCTGCGAATAAACCTCGGGAAGAATGGGTTGTTCCTGCTGTGGTTCTCT
TCTTAACCTTCATTCGATTCAATTTATTCTTGTCACCCACTGTCATTGTC
ACTGAGAAGGAAAAGAAGAAAAATAAAAAAGAGAAGAAAGCAAAGAAGGA
ACAATAGATGGGTCGATGTCGAACTATTTTTGTTGGGTTGGTAACTGGCC
TGTTAGCTTTTGTCTTCATTACGGCAGGGGCTATCAAACTGACACCTAAA
ATTTCTGTGCAAGCACACAAGAGAATGTATCGAGATTTCGTTCAGTATGC
TAAACTTCATCCAGCTGTTAAATTTGGTTATGATATTGATCCCAAGAAAT
TCATGCCACAAGTTGGTGTTGTGGAAGTCATCGCTGGCACTTTTCTTGTT
GTTGGACCACGATCGACACGCATGATCTGTTGTTTAGTTCTCTCCTCTCT
CATGGTTGGTGCACTGTATTTTGTAAAAGCTGCGAATAAACCTCGGGAAG
AATGGGTTGTTCCTGCTGTGGTTCTCTTCTTAACCTTCATTCGATTCAAT
TTATTCTTGTCACCCACTGTCATTGTCACTGAGAAGGAAAAGAAGAAAAA
TAAAAAAGAGAAGAAAGCAAAGAAGGAACAATAGATGGGTCGATGTCGAA
CTATTTTTGTTGGGTTGGTAACTGGCCTGTTAGCTTTTGTCTTCATTACG
GCAGGGGCTATCAAACTGACACCTAAAATTTCTGTGCAAGCACACAAGAG
AATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060977-exon-scaffold_350-1575043694:190699..190896 | TCONS_00060977-exon-scaffold_350-1575043694:190699..190896 | Clytia hemisphaerica | exon |
| TCONS_00060977-exon-scaffold_350-1575043694:189202..190129 | TCONS_00060977-exon-scaffold_350-1575043694:189202..190129 | Clytia hemisphaerica | exon |
| TCONS_00060977-exon-scaffold_350-1510915933:190699..190896 | TCONS_00060977-exon-scaffold_350-1510915933:190699..190896 | Clytia hemisphaerica | exon |
| TCONS_00060977-exon-scaffold_350-1510915933:189202..190129 | TCONS_00060977-exon-scaffold_350-1510915933:189202..190129 | Clytia hemisphaerica | exon |
| TCONS_00060977-exon-scaffold_350-1491911889:190699..190896 | TCONS_00060977-exon-scaffold_350-1491911889:190699..190896 | Clytia hemisphaerica | exon |
| TCONS_00060977-exon-scaffold_350-1491911889:189202..190129 | TCONS_00060977-exon-scaffold_350-1491911889:189202..190129 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:189202..190896 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR032808 | DoxX |
Blast
The following BLAST results are available for this feature:
|
