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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060993 ID=TCONS_00060993|Name=TCONS_00060993|organism=Clytia hemisphaerica|type=transcript|length=379bp
cagaaaaataaaaaaacaaaatattaaagCACTACTAGAAAGTTATTACA
AAGAAGATGGCGCGTATTGAATGGGCAATGTGGGCCAACGAAAATGCTGT
CATTGCATGTGCAACACTGTTTGTTGGTGGGTTACTTGCAGTGTGCAGTC
TTGCTGATGTTGAGCATGTTCGATGGGAGGTTGGTGCTTACGGAATGGCG
ATTGCTTTGATAATCTTTTTCTTGGAATACCCGAGAGGTAAAAGAACCAG
AGGGAATACTAGACAAAGAAGCATGCAACACATCCCAACGAACTTTGTCG
CCAGCATGGGTTTCTTTGGAAGAAATTATTTTGttcgttttattttatat
tttctGTGTGCAGTGCCAACTGTATTCNT Run BLAST on NCBI transcript from alignment at scaffold_352:84134..94667+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060993 ID=TCONS_00060993|Name=TCONS_00060993|organism=Clytia hemisphaerica|type=transcript|length=10534bp|location=Sequence derived from alignment at scaffold_352:84134..94667+ (Clytia hemisphaerica)
cagaaaaataaaaaaacaaaatattaaagCACTACTAGAAAGTTATTACA
AAGAAGATGGCGCGTATTGAATGGGCAATGTGGGCCAACGAAAATGCTGT
CATTGCATGTGCAAGtaagtctttttttattttattttttgcctCCATAA
CTAcgaatggaaatcttttaacaTTAAAGGAAAGAGTGGTCTCGCTGCAT
TCCCTTCTCTTGGTGACTAAATAAATTGGGAATTTGTAAACATTAGTTCT
CTTTATACTGAGACGAgtaatttagaaaatgagcattatggaggagtgta
ctttTCATTCATGTCTaataaataggatctcctccacagatcacatttta
taaactactcgtctcagacgatttttccgtctcagtataaatggaactaa
TTTTTCCAATAGTTGTGAATACCTAGGTAAAAGACTGATtatagttcgtc
caccctcactttaaggtaccgtaagttggtctaatgttgacatccctctt
ctaattccaaAACCCAGTTTTAGAGATAAGAATAATAGTAAGGTCAgacg
aaagattttttcctctctggTCACAAAGCAAAGAAATATAGTTTCCATAA
GCGACTCCGACCTTTCTACtattcctatctttaaagaagggtggcgagat
tagatgagggatgtcgacatcaTTAGACCAAGTTAAGGTACTGTATGAAC
AGAATTTTTCCAatggttcttttgcaaattttgccattttccacatttag
aaaaatgctttttttgcCTTGAAAGGGTTCGTCCACCCCTTGTATGGGAA
TTTAACAGAGCAGCTCATTTTACTTACGCGTTGTGCGGAATAATTTTTTG
TGAAGTACTTTGAAGTCTGGCCCCTGGTGTAAAACTTAAGATGCTaacaa
aattgattattttgaaatatattagATTAATGTCTTGGATGTAATGAAGG
GTGAATAAAAATCCTGGCAAGGTGCTCGATACAAAACGagtgttttcttc
attttaaaacttattccaatgaaacaaaatgctgaaaacgggattttata
ttttgtttttgaataaattttgaaatgattaGTTGTCTTAGATGTAGAAA
GTGTTAATGAATTCGGAATACAAATCTTGTTTGACTGTTAGTGGTAAACA
TGGTGTGTTTGGATGAATTGTTGAAATCGATAACTGTTGAGGCAGGTGAA
ATAAATAGATCTAAACAATAATAGATTTGCAAAGGGAAATTtattagttt
caattttcactgattttaaAATCAATCGGATTGATAGAAAAGTTAGGGCA
CTGCTTTTCAATTCTCATTGAAAATGCATGCGACCGAACGAAATTTCAGC
TCTATAAAACAGTGAAAAAGGAGATTTGATGGTTTTAGTGAAGTTGGTGA
GTGTAACCATTATGACCATAAAGTTCTGTATTTTCATCGTATTATCTATT
TCGATCTTTTCATGTGACTCAAAGTTGTACGAACAGTTTTCAGATGCTTC
AAGCTCAAAAGGAAATGCTGACATTTTCGTAATCGGTTTATTTTCACTTT
GTCAAAACGAGACTAATTCCTTTCCCTATTATGaccagaaaaagattttg
aattctTATTTACACTTCGAGAGAACTGTCACATTTTATCAAACCATATA
CGATGTATCTTTTGGGAAAATTGGTAGCATCTCCTATGATGTTTGCCGCA
ATCAAAGTCGCCTTTTGGAGGTTATTGCAGGACTTTCACTAAGTGGTAAA
TATTTGCTTGAACCAAGAAATGCTATTCGATTTGCTCATGCTAATTATAT
TGCTATCTATGGTTTCTTAACTACACCTCTATTGAAGCTTTCATTGGAGT
TATTGTCATGGATAGAGGTACCTTACTTTGTTATCTTACCTGACGATGAA
CAAGCGTTTTATCTACCTATCACACGATATCAACATTTAGGAAAAACAGC
CATGATTGAGAATAAGGTTATTGAAAGGTTATTTACTTCGTATTACTGGC
AAAGTTTTACATTCATTTTGTTAAGTTCGAATGAATTATATGTCAAGAGA
GTTGATTATTTGATCGAAAAGCTGATCGCCGAGAAAAGATCTACGTGCAT
TGTTAAAATGTTAGCATTCAATCCATCAAAAGTAGACGAGACTGTGCAGT
TGTTGGTGAACCAGACTTCACGAAAAGTCATCTACGCGATGGGAAACAGC
GTACAAACGGAAATTTTTCTGCAAACTCTCGATCGCTTTAAAGTTTACAA
CCGCATCATCTTTCTAGATTCGCGAGCGGTTGGTGTCAAAGTCCCGGACA
GGCTTCAGAAGGGTTTATATTTTGTTCCATCTCTTGGgaattagtgaggt
taagtataccaggataatcacgacgacggacgaaaaatgtaataggctag
tggaaatacaaaatttgattggttgaaactcactagcctgttaaattttc
gttcgtcgtcgtgattttaccaatttacttaacctcactattatgCATTC
GAATTATACGAAAATGAATCGAAGAGAACGTCTGTTCCGGATAGCTTTCC
TTTCCCGGTTTGTAAAAATGGTTTCTTCCGTAATACGGAATTAATGGATT
CTAAAGGTGATATCTGTTTGGAGAATTCCAATCTGACACTAGTTCAATGG
AATAGACAACAAAACGACACAAGTAGTGTGTCGGAAACTCTATCGCATGC
CGTTTTATTTCCCTATTGGCAGTTTTACGAAGCTTCAAGATGGCTACCTA
AAATTGAACATTATAACATAACGGATCAGCCTGACCAATTAAGATATATC
TCTCGCGGCATCAATCGTAAATTTCGTGAATGGCTACACGGCTCACATTA
CATTATTAACATGCAGAAACCAGGTGCTGTTCACACATGCCTCACACACT
GGTTTCCATCAACTTGTATCTTTCGTGGGCGTAAATTTCCAGTCACGTGG
CCTGGACCCTCGAATGAAATCCCGCGGCAGTATTTGTGTTTCGAGGAAAG
AATACTACCAGCAGGGCAAACATTGCAATATGGGGATATTCCTCACAATG
AAACACAATGGGATTTAGAATATGGCTACAGACTTGTTAAATGCGCCTTT
GGATGGTATAAAGAAAACGCTGAAGACTTTTCTTGTCAGCCTTGTCCTGA
AGGGCTGGTATCAAGTCCCGATCGAACTGCTTGTATTGATCAATATACTC
GAATCAGTGTTTTTGGTTTCAATACGAAAGAAAGTCTTATTTTTTCGATG
CTCATTTTCATGGGATATGTGATCAGCTTATCGTACTGTGTATGTTTGAT
CGTTCATCGTAAAACAGCTGTGGTGAAATCTTCGCAGTTCAAATTCACTC
TATTACAATTATTGAGTcattttttcgatttcttttgtCTCATGTATGCT
TTCGCTTATCACAATGACAACACTGCTTGTATGCTTTTAACTGTCGGTGT
TGGCTTCTTACTGTCCTTGAATCTAGCTCTGGCAATTATCAAGACCCAAA
TANTGCTTGTATGCTTTTAACTGTCGGTGTTGGCTTCTTACTGTCCTTGA
ATCTAGCGCTGGCAATTATCAAAACCCAAATCATCATTGATATATTTTAT
GCTAAAACGAAAATTGATCACGAGCAACAGTTGAAACGGAACTATAGAAA
CGCTTTTATAATCGGGATAATCGTTTCCGTTTCGGTTTCTTTATCGGTTA
TCACCATTGTTTTCCATAATCCCGATGCAATCGGGGAAATAATTAACCAA
GACCTCAAATTCGGTTTTTGTGATTTCGGTCATCATCTACAAGTCCAGTT
TGGTTATTCGATTATCCTATCCATCATTTGTACTGTTCAAAGTATACGGG
CGCGTCATTTACCGGATTTCTTTAAGAGTACCCGGTTTATTGTATACGGT
ATGTTTACAAACCTGATGACCATGGTAGTGTTTTACACCGTATATAACAA
CCAACGGGGAAACCGGATTGTACAGTTTTATGCGATGGGTTTTGCTGCAG
TTTCTTCAAACTATGTTTTATTATTGATCGTTCATACCAATCGGATCCTC
AGTATTTTTAATCGGAAACGAAACACACAGGCAGTCGTCAGACGTCAAAT
ACGACAGAACATggacaaattgaatgaaaacgTTAAAATCAGAACTCTAC
CTCAGCAATGATTTGGACATTCAAATTAGTTATTAAAAATATGATATTGA
AAGATATTTAGCGAAAAATAATACTAGCTTTTatcattttgattaatttt
ttttgttatcaTTTACAATTACAGTAggctcccggttattcgaaccTGCA
CTTATTCGAAGTGAGATGGCGTTCCCCTTGGATCTGCTTACTCAACCCAG
GCAAAAACACTCTCGGTTATTCGAACTTCAGTTATTTGaactttcagtta
ttcgaagcgGTTTCTATTCCCATGCATTATAGGCTAAATCACACTcagtt
attcgaatttttcttattAGGAGATTGTCGAGTGAGAACATTAATTTCTG
CGATTGAAATAAttgttttcctttaaaaattagttttcaataTTTATGGC
TATAAATCGCTATTCAAGCaatttatttgtgtttattacgcTCATGAACC
GCAATGCTTCAATTTCTTCAGGAAAGTCCACCCAATTAAGGTTAAGTTGA
GAATCTGGCGGGATAACGAATTTTGCAGTTATTTGAATAACCGGAAGTTT
ACCGTAATTCAATAAGCAAAAACTGTTAATTACAACAACCTTACCTTCCA
TTTAACACAATAATTTATCCTATTTCAATCCCTAAAGGAAGTTTTGTTCC
ACCAACTAGTCATATCTCCcagttgaattttgaattttctaacGTGCATG
ACAGTCTCACACAAGCTCTTGTTAACAGAAAATTTGAGCGCGATTCTTTC
CAAATTTACCAATGCCGGTTCGACACTGACTCAGCTAGactcaaaaaaag
gttttctctATTCCATTCCAAATATCAGCAAAATTCAAAGATTATTTAAT
TCGTTATGTAATTCGGTTTTTNTTCCATCCCAAATATCAGCAAAATTCAA
AGATTATTTAATTCGTTATgtaattcgattttcatttgGAATTCTTGAGC
ACTACACACTCTTTTGCTTTTAtgctcaatttcaagcaatttagagatca
aagtagtaaaaactgGGTATAAATACCTCAacaagaacaggataagaaca
atttgaggctcaaagtgccaaaaataaTAACAGTATGTATTCCGTAATAT
AAACTTTCTTGATTCGTTTCTTTTTTAGCACTGTTTGTTGGTGGGTTACT
TGCAGTGTGCAGTCTTGCTGATGTTGAGCATGTTCGATGGGAGGTTGGTG
CTTACGGAATGTGAGTGTAGtttattttaaaacttgaaTCTGTCAATATT
AGATTAGCCAGCACCTTTTCTACCAAtaaattttctatattttcattGTG
TCGGTCAACTCTCACTCTCTaaatcgaatctttctgtaactcGGACTAGA
ATATTGGTagcttgaagatcgaattagagagagtcaactttaTACATCGA
TAGCCTAgtctatactagacgtcactgcattattatttctacaaaattaa
aaatcctGTTATTTGGCGgggttacttgttatctatagCCTGGCATCGTA
TAGATTCGACTTTTTCCGTGTGCTGTTGTCCCTCCTGTAGCCTATTACAA
ATCTCTCACAAGAAATGATAACCAGATTGAAAATCGCTATATTATAACCA
ATACCCAATTTAAGCAAGAACCTGACCTTGTTCCCTCAAGACCTCTTGCT
CCTCCCTTGTTTCTTTCAAGtatatgttttatttttcatttccttTAGGG
CGATTGCTTTGATAATCTTTTTCTTGGAATACCCGAGAGGTAAAAGAACC
AGAGGGAATACTAGACAAAGAAGGTacgaaaacattttattttgtttcac
cTGTTAACAATTCAGGAATGTAGTATTTTTCTCAATGATATCGAGGGGGG
GAGAAAAGGTCGGGGAGAGTGACAAAAATCTTGGAGGAATACAGAATTTC
gcctagactagagtctacttctgactgaactttgtttttgataatttttt
atgatgcTGAGTCTATAAGGGGCCCCCGGGCTAAATTTTCCCCTGATGAG
GTTTTCTCATGTTCAATTATCTACAAAACAGAACTTTTGGTAAAGTCACT
TTTTAAAGCTAAATTTCTTTTGCCCTTTTCTGATAAGATAATAGGtaata
ttatttttgaaagtccCTTCCCTTCATCTTCATGGAATGAAATCATTCCG
AAAAATAGAATCTAAACTtatacaccctcttctcacagacccactgggat
cccttcccactggaaaatttgaccaaaatatcgtccccggtggaaaacta
tcctccaatttttgtacccactgaaaataattaaataaagcAATCCTCAC
taattttttgttctatttttcccatccccactgaattttcttccttgaaa
acaatagaattgaaaccccagccataaaaaatgggtgaatatcaatcccc
atcgagttttagtccgtgATTTTTACTGTGAAAAGGGGGCGGTGTAGTTA
TGAATAATAAGATTCAGATTtgcaaaatattaaaatctTACTTATCCCAT
AATATCTTTTGTGTTTTATTATAGCATGCAACACATCCCAACGAACTTTG
TCGCCAGCATGGGTTTCTTTGGAAGAAATTATTTTGttcgttttatttta
tattttctgtaagtaactttttttgtatttttttgccACAGATGGTCAAG
TGATGAACTCTTAAGTAAACTCTTAAACAAATGAGACTTAATTCTTTTTG
AGGTGGAAACGGCGGGATCTAAACACTTTTGATTAACCCTAGTGTTTAAA
ATCCATTTAGTAAGTCCGTATATAATCCCGGTCTGGaagctttttgtttc
tttccattgtttcttacttgaacttgcgttgagaaattagtttttggacc
tacctaaggtagtcctttaaattaacccttgtccgttcgttcgtccgttc
gttcgttcgttcgtctgttgccagcttttctcgggatcggctctNNNNNN
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NNNNNNNNNNNNNNNNtgcaatatgacaatacctaaaatgtgacggagcc
cgattttcgaaaaacatttttttccatccgaaaatgccggaaatatgccg
gaaaaaccggttttttgacgttttctcgagattttatcacaagttttttc
agattttttgcagaaagatgcgtattcgcaatgctcaaaacatggccgag
ttcgatttttgagaaaaaaatttttccggttgaaaatgccggaaatcgcc
gtttctGCACCGTTtctgcagattttcattggattttttccttttatttc
tatgtttttcactcaaaaacattattgataacaatgctcaccgtcaagca
tgattcaattgtcaataaaacagatttttgcgaccagaactttctattaa
tttttccctacaaccctcccctctccccccatcatcaatcaatgatgaat
ttattgcgttgtgtattttcgctaaacgctatattttctgactgattttt
ttcatttttcttttcgcattgctatctaaatttcatcatcaggtaggtcc
attcagcatgttgcttgttgatcatgtgattagatttTAATCTATTAcaa
gaggagtacttggtaacgtgatcgaaaactgagcaaatcgatttttatat
ttttatgttaacAAAGGAAAAGCTCACAAAATGTTAGTACGGActatatg
taatagttatcggaacgagtgaaatatttccatattgtatgagcaaatgt
ctgataactagtttatcggtgacccaaaaaatgcactttctgtgttggag
gacacttttgtagcaaagtgacgttatattgcttctaccgctacaatgca
acaacatcttttcgtcaatttatatttttacatgtaaaatacaagatata
ttgtactctttttaaccaatcagattgcagatattttttggatcgccgat
aaaaacCTATAAAAGAAACGTTTGTTGATATGATATTCTACTCAGCTTGC
TTCGTTGAATTTCAatcaagctcgactgaataTCTTCCAATGAACGATTT
TTCTTGACGAATATTTGctcaggcgaaaataaaaaaatgtagtgtttccg
gaaaccggccgggtgaaaaacaataattttctgacccggccgcagacttc
attagtagttgatacattagtattcagggcttacttcatactgtttgtac
ataaaagttatctttaaagttctatttcaatgatcttaagttatcaaaaa
tagcaaaaaaagtttttttccggccgcatgagagcttttttccttgaccc
gcattccggaaacactacatttttttattttcgcctcattgttttatatt
ttctctTTAGGTGTGCAGTGCCAACTGTATTCNT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060993-exon-scaffold_352-1491911889:84134..84247 | TCONS_00060993-exon-scaffold_352-1491911889:84134..84247 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1510915933:84134..84247 | TCONS_00060993-exon-scaffold_352-1510915933:84134..84247 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1575043694:84134..84247 | TCONS_00060993-exon-scaffold_352-1575043694:84134..84247 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1491911889:89412..89493 | TCONS_00060993-exon-scaffold_352-1491911889:89412..89493 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1510915933:89412..89493 | TCONS_00060993-exon-scaffold_352-1510915933:89412..89493 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1575043694:89412..89493 | TCONS_00060993-exon-scaffold_352-1575043694:89412..89493 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1491911889:89982..90056 | TCONS_00060993-exon-scaffold_352-1491911889:89982..90056 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1510915933:89982..90056 | TCONS_00060993-exon-scaffold_352-1510915933:89982..90056 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1575043694:89982..90056 | TCONS_00060993-exon-scaffold_352-1575043694:89982..90056 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1491911889:90808..90891 | TCONS_00060993-exon-scaffold_352-1491911889:90808..90891 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1510915933:90808..90891 | TCONS_00060993-exon-scaffold_352-1510915933:90808..90891 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1575043694:90808..90891 | TCONS_00060993-exon-scaffold_352-1575043694:90808..90891 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1491911889:94644..94667 | TCONS_00060993-exon-scaffold_352-1491911889:94644..94667 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1510915933:94644..94667 | TCONS_00060993-exon-scaffold_352-1510915933:94644..94667 | Clytia hemisphaerica | exon |
| TCONS_00060993-exon-scaffold_352-1575043694:94644..94667 | TCONS_00060993-exon-scaffold_352-1575043694:94644..94667 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_352 | supercontig | scaffold_352:84134..94667 + |
Blast
BLAST of TCONS_00060993 vs. Swiss-Prot (Human)
Match: CY24A (Cytochrome b-245 light chain OS=Homo sapiens GN=CYBA PE=1 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 5.080e-22 Identity = 45/107 (42.06%), Postives = 61/107 (57.01%), Query Frame = 3
Query: 57 MARIEWAMWANENAVIACATLFVGGLLAVCSLADVEHVRWEVGAYGMAIALIIFFLEYPRGKRTRGNTRQRSMQHIPTNFVASMGFFGRNYFVRFILYFLCAVPTVF 377
M +IEWAMWANE A+ + L GG++A +W GAY + + + LEYPRGKR +G+T +R Q T V G F RNY+VR +L+ L +VP F
Sbjct: 1 MGQIEWAMWANEQALASGLILITGGIVATAG----RFTQWYFGAYSIVAGVFVCLLEYPRGKRKKGSTMERWGQKYMTAVVKLFGPFTRNYYVRAVLHLLLSVPAGF 103
The following BLAST results are available for this feature:
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