TCONS_00061030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061030
Unique NameTCONS_00061030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061030 ID=TCONS_00061030|Name=TCONS_00061030|organism=Clytia hemisphaerica|type=transcript|length=654bp
AACTCAACGTACTAACGAGAAGAAGGATCCACCTCAAACAAATCAAATTC
CAAAGAAGAAGACATTCCTTGGCAACCAAAACGATCCAGTCAAATGTCAA
CTGTGTGGAGAAGCTCCATCATCATCAGAGCACATGGTATCAAATGGTCC
AAATGGTTCCAAGATCGTCCAATACTATACATGCAAAGATTTCGTCGAGA
AGAAACCTGCAGCTCGTCTAGCAATCATCAATAAAAAGGGATTCTGCACT
CAATGTCTTCTGCCAGGTGCTGACGCATCCAAAGGAAAGCACTCTGATGG
TCGATGCCAGAGGGACTTTACATGTCCACACCCCAGTCACCACCAGTATA
CCATCAAGAAACATGTCCTATTATGCGAAGAGCACAAGGACaatcaatca
aatcaagatATTCTCGATCGGTTCAAGTCTAGATTCATGCGAAGTTCACA
CCTACCAGATTTCGTGAAGCAAATCAAACTGTCATTCCACTCTTCATTCA
AGTCTGATGTATCACCTCATGATGATTCAATCACCGAAAAGGGAATCTAC
CTTCTTCAGACAATAACTGTCAATGGCAATAGAGTCAACATCTTTTACGA
CAATGGTTGCTCTGACTTCATACTATCAACCAAAGCTGTTCAACTTCTTG
GATC
Run BLAST on NCBI

protein sequence of TCONS_00061030-protein

>TCONS_00061030-protein ID=TCONS_00061030-protein|Name=TCONS_00061030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
TQRTNEKKDPPQTNQIPKKKTFLGNQNDPVKCQLCGEAPSSSEHMVSNGP
NGSKIVQYYTCKDFVEKKPAARLAIINKKGFCTQCLLPGADASKGKHSDG
RCQRDFTCPHPSHHQYTIKKHVLLCEEHKDNQSNQDILDRFKSRFMRSSH
LPDFVKQIKLSFHSSFKSDVSPHDDSITEKGIYLLQTITVNGNRVNIFYD
NGCSDFILSTKAVQLLG
Run BLAST on NCBI

transcript from alignment at scaffold_353:3..656

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061030 ID=TCONS_00061030|Name=TCONS_00061030|organism=Clytia hemisphaerica|type=transcript|length=654bp|location=Sequence derived from alignment at scaffold_353:3..656 (Clytia hemisphaerica)
GATCCAAGAAGTTGAACAGCTTTGGTTGATAGTATGAAGTCAGAGCAACC
ATTGTCGTAAAAGATGTTGACTCTATTGCCATTGACAGTTATTGTCTGAA
GAAGGTAGATTCCCTTTTCGGTGATTGAATCATCATGAGGTGATACATCA
GACTTGAATGAAGAGTGGAATGACAGTTTGATTTGCTTCACGAAATCTGG
TAGGTGTGAACTTCGCATGAATCTAGACTTGAACCGATCGAGAATatctt
gatttgattgattGTCCTTGTGCTCTTCGCATAATAGGACATGTTTCTTG
ATGGTATACTGGTGGTGACTGGGGTGTGGACATGTAAAGTCCCTCTGGCA
TCGACCATCAGAGTGCTTTCCTTTGGATGCGTCAGCACCTGGCAGAAGAC
ATTGAGTGCAGAATCCCTTTTTATTGATGATTGCTAGACGAGCTGCAGGT
TTCTTCTCGACGAAATCTTTGCATGTATAGTATTGGACGATCTTGGAACC
ATTTGGACCATTTGATACCATGTGCTCTGATGATGATGGAGCTTCTCCAC
ACAGTTGACATTTGACTGGATCGTTTTGGTTGCCAAGGAATGTCTTCTTC
TTTGGAATTTGATTTGTTTGAGGTGGATCCTTCTTCTCGTTAGTACGTTG
AGTT

Coding sequence (CDS) from alignment at scaffold_353:3..656

>TCONS_00061030 ID=TCONS_00061030|Name=TCONS_00061030|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_353:3..656 (Clytia hemisphaerica)
TCCAAGAAGTTGAACAGCTTTGGTTGATAGTATGAAGTCAGAGCAACCAT
TGTCGTAAAAGATGTTGACTCTATTGCCATTGACAGTTATTGTCTGAAGA
AGGTAGATTCCCTTTTCGGTGATTGAATCATCATGAGGTGATACATCAGA
CTTGAATGAAGAGTGGAATGACAGTTTGATTTGCTTCACGAAATCTGGTA
GGTGTGAACTTCGCATGAATCTAGACTTGAACCGATCGAGAATatcttga
tttgattgattGTCCTTGTGCTCTTCGCATAATAGGACATGTTTCTTGAT
GGTATACTGGTGGTGACTGGGGTGTGGACATGTAAAGTCCCTCTGGCATC
GACCATCAGAGTGCTTTCCTTTGGATGCGTCAGCACCTGGCAGAAGACAT
TGAGTGCAGAATCCCTTTTTATTGATGATTGCTAGACGAGCTGCAGGTTT
CTTCTCGACGAAATCTTTGCATGTATAGTATTGGACGATCTTGGAACCAT
TTGGACCATTTGATACCATGTGCTCTGATGATGATGGAGCTTCTCCACAC
AGTTGACATTTGACTGGATCGTTTTGGTTGCCAAGGAATGTCTTCTTCTT
TGGAATTTGATTTGTTTGAGGTGGATCCTTCTTCTCGTTAGTACGTTGAG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038313XLOC_038313Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061030-proteinTCONS_00061030-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061030-exon-scaffold_353-1491911889:3..656TCONS_00061030-exon-scaffold_353-1491911889:3..656Clytia hemisphaericaexon
TCONS_00061030-exon-scaffold_353-1510915933:3..656TCONS_00061030-exon-scaffold_353-1510915933:3..656Clytia hemisphaericaexon
TCONS_00061030-exon-scaffold_353-1575043694:3..656TCONS_00061030-exon-scaffold_353-1575043694:3..656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_353supercontigscaffold_353:3..656 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.940711	2.0563	0.833186	1.02891	2.53297	1.67255	3.60145	3.77854	3.1798	2.92074	1.74693	3.10709	0	0.515481	0.505683	0.473396	0.00778323	0.449599	0	0.11682	0.193543	0	0.323041	0.199013	0.470897	0.338247	0.218638	0	0.14812	0.324399
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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