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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061107 ID=TCONS_00061107|Name=TCONS_00061107|organism=Clytia hemisphaerica|type=transcript|length=1111bp
AAGAAGGGTTTTCGGAGATGGATGAGGGGTGTCGATATAAGACCAACTTA
cgatttttaatcaaaatatattggaattTTAGTCTCAAAGCCCCGCTCGG
CTTCTGGGTCCCAACTCCGGCCGTTCATGATTCCGGAGGTTTGCGGTACT
GTGGAATATACCGTTTGAAAAACcatgaatttttaataaaaataatctAG
TTTTAGCTGGTCTCCGTATGGTGACATTTATTTTGTCATAATGTTTGAAT
TAGTTGGTATGGTTACACCTCTTATGAATTCCTTGTGATTTATTGAATTT
AGctttatttcattatttatgAAATTCAAGAGGTAgtaattttctcacaa
aatgggccagcgaaaatttgtaaataattttgTGAAGAAAAATCAGATTA
TAAACGACACTATGAGATATTTATGTAtcaatttgtttttttgtatAGTG
TACATTGGTACATTAATATTGTCAGTACTTGGAAGTAACTCCCCATTTAC
ACCTGCTGTTAGATATCATGGTCCACACCAAAATGCATCGTTGAACTATA
GTTATATCAATATCAAATACTTGAAAAACCAGAAATTAAACGTCGTACCA
TTCGCTGTTTTCAATCTACTAAACCGTACTTCCTGTGTTAAAGAATGCGT
TAAAACCCATGGTGTTTGTAAAAGTTTGAACGTCAAAAAGATAAATGGTG
GATTTAATTGCGAAATCCTGGATACTGATAAATATAGTGAAGTGGATGGA
GCACTGATCGCTGATTCGGAGACGACACATTACGTCATAGCCAACCAATG
ctttaaaaatccatgtgaTGGAGGGTGCAGTAGATGCAAACCAATCTACC
ATAACAACTCTTTCCACTGCGaaCAAATTTATTGCTCCTGTAAAGAAGTA
ACATCAAAACGCCTTCCATCCGGTTACTACaatttaaaatttggaaatat
ttccGCCAAAGGATTCTGTGATACTCAAACTGACGGANATACCAATGTAT
CAACTATgctaacgaacaaaacttgatttacaagcgggaatatctaacca
aacgacatttgatagcttgaacggtcaaaTTGATTTTCTATATAATGGAc
catgaacccat Run BLAST on NCBI protein sequence of TCONS_00061107-protein >TCONS_00061107-protein ID=TCONS_00061107-protein|Name=TCONS_00061107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MGQRKFVNNFVKKNQIINDTMRYLCINLFFCIVYIGTLILSVLGSNSPFT
PAVRYHGPHQNASLNYSYINIKYLKNQKLNVVPFAVFNLLNRTSCVKECV
KTHGVCKSLNVKKINGGFNCEILDTDKYSEVDGALIADSETTHYVIANQC
FKNPCDGGCSRCKPIYHNNSFHCEQIYCSCKEVTSKRLPSGYYNLKFGNI
SAKGFCDTQTDGXTNVSTMLTNKT Run BLAST on NCBI transcript from alignment at scaffold_354:965184..967383+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061107 ID=TCONS_00061107|Name=TCONS_00061107|organism=Clytia hemisphaerica|type=transcript|length=2200bp|location=Sequence derived from alignment at scaffold_354:965184..967383+ (Clytia hemisphaerica)
AAGAAGGGTTTTCGGAGATGGATGAGGGGTGTCGATATAAGACCAACTTA
cgatttttaatcaaaatatattggaattTTAGTCTCAAAGCCCCGCTCGG
CTTCTGGGTCCCAACTCCGGCCGTTCATGATTCCGGAGGTTTGCGGTACT
GTGGAATATACCGTTTGAAAAACcatgaatttttaataaaaataatctAG
TTTTAGCTGGTCTCCGTATGGTGACATTTATTTTGTCATAATGTTTGAAT
TAGTTGGTATGGTTACACCTCTTATGAATTCCTTGTGATTTATTGAATTT
AGctttatttcattatttatgAAATTCAAGAGGTAgtaattttctcacaa
aatgggccagcgaaaatttgtaaataattttgTGAAGAAAAATCAGATTA
TAAACGACACTATGAGATATTTATGTAtcaatttgtttttttgtatAGTG
TACATTGGTACATTAATATTGTCAGTACTTGGAAGTAACTCCCCATTTAC
ACCTGCTGTTAGATATCATGGTCCACACCAAAATGCATCGTTGAACTATA
GTTATATCAATATCAAATACTTGAAAAACCAGAAATTAAACGTCGTACCA
TTCGCTGTTTTCAATCTACTAAACCGTACTTCCTGTGTTAAAGAATGCGT
TAAAACCCATGGTGTTTGTAAAAGTTTGAACGTCAAAAAGATAAATGGTG
GATTTAATTGCGAAATCCTGGATACTGATAAATATAGTGAAGTGGATGGA
GCACTGATCGCTGATTCGGAGACGACACATTACGTCATAGCCGTAAGTTG
AATACAGAGTATCTGATTATGTCACTAATTATAGTCCGTTCACGATCATC
TGGATAATGaatatttgttgtttttgatagttaaaagcaaagtttttatt
taaaagcgATCAATTGTATAATTGTACAACGTGTACTTAGCTCAAGGCTA
AAAACTGTAATATAAACATTGCACTACTATAAAACCCAATTTGGGCTCAG
GGTTGAGTTGCTAAGGACTTTCCGAATTTTAGCCCAAAAAATTACTTAtg
gattttaagccaaaaatgtctagaaacttcaaaaaatcttgtcCAAATGA
TCTCTAATTATGTATTCGAACCATCGGTACGTCGGTCAAATAATGCCTAA
AAATGCTTCTTAACTATTAATTATTTTTCCATAGAACCAATGctttaaaa
atccatgtgaTGGAGGGTGCAGTAGATGCAAACCAATCTACCATAACAAC
TCTTTCCACTGCGGTAAGTTATTTTCCATCAACCTTTAAAATTTGTGATT
TCAAACATTTACTTAGGCCCCTCCACTTAGGACCGCAGATTTATAAAGCC
CGAATGGCTAGACAGAGTAACTTGGCTGAAAAGTGTGGCGTGGTCGATAG
GAAAttctacctaggtcacgtgacttTACAACAGAAAATCAACATCGCAT
GATTTTTGCATGATTTTTGCActattcacttttttgcttggCTAGCCCTT
AGGAAACTGTGCGTAGGGCTCTTAAACTGTTGATCGTCCAGGCTAACTCT
ACATCTGACTTACAGCTGCTGCAGACATGAANTAAACTGTTGATCGTCCA
GGCTAACTCTACATCTGACTTACAGCTGCTGCAGACatgaattgttttct
tttcaaaatcacTTTCAGGTTCTAATGTGAAATAAACAGAGGGCTTCCga
atgtactcttaggttccaaataaacgcccccccccgcttgttaatctTTC
GAGAATTTTCCAATTCCCCCGGACCTTATCAGGACCCCCCGTTTATAAAT
TCTTAGGAATATTTTCaactgtcaaagagaaggccccttatttcgCTCTA
AAAAGCTTGATTTTAGCTTATACTTACcttattttttccaaccccccagc
AATTagcccccccgtttatttggaaccagTATGCGGttgtattttgcttt
ttttttctagaaCAAATTTATTGCTCCTGTAAAGAAGTAACATCAAAACG
CCTTCCATCCGGTTACTACaatttaaaatttggaaatatttccGCCAAAG
GATTCTGTGATACTCAAACTGACGGANATACCAATGTATCAACTATgcta
acgaacaaaacttgatttacaagcgggaatatctaaccaaacgacatttg
atagcttgaacggtcaaaTTGATTTTCTATATAATGGAccatgaacccat
Coding sequence (CDS) from alignment at scaffold_354:965184..967383+ >TCONS_00061107 ID=TCONS_00061107|Name=TCONS_00061107|organism=Clytia hemisphaerica|type=CDS|length=2025bp|location=Sequence derived from alignment at scaffold_354:965184..967383+ (Clytia hemisphaerica)
atgggccagcgaaaatttgtaaataattttgTGAAGAAAAATCAGATTAT
AAACGACACTATGAGATATTTATGTAtcaatttgtttttttgtatAGTGT
ACATTGGTACATTAATATTGTCAGTACTTGGAAGTAACTCCCCATTTACA
CCTGCTGTTAGATATCATGGTCCACACCAAAATGCATCGTTGAACTATAG
TTATATCAATATCAAATACTTGAAAAACCAGAAATTAAACGTCGTACCAT
TCGCTGTTTTCAATCTACTAAACCGTACTTCCTGTGTTAAAGAATGCGTT
AAAACCCATGGTGTTTGTAAAAGTTTGAACGTCAAAAAGATAAATGGTGG
ATTTAATTGCGAAATCCTGGATACTGATAAATATAGTGAAGTGGATGGAG
CACTGATCGCTGATTCGGAGACGACACATTACGTCATAGCCAACCAATGc
tttaaaaatccatgtgaTGGAGGGTGCAGTAGATGCAAACCAATCTACCA
TAACAACTCTTTCCACTGCGaaCAAATTTATTGCTCCTGTAAAGAAGTAA
CATCAAAACGCCTTCCATCCGGTTACTACaatttaaaatttggaaatatt
tccGCCAAAGGATTCTGTGATACTCAAACTGACGGANATACCAATGTATC
AACTATgctaacgaacaaaacttgaatgggccagcgaaaatttgtaaata
attttgTGAAGAAAAATCAGATTATAAACGACACTATGAGATATTTATGT
AtcaatttgtttttttgtatAGTGTACATTGGTACATTAATATTGTCAGT
ACTTGGAAGTAACTCCCCATTTACACCTGCTGTTAGATATCATGGTCCAC
ACCAAAATGCATCGTTGAACTATAGTTATATCAATATCAAATACTTGAAA
AACCAGAAATTAAACGTCGTACCATTCGCTGTTTTCAATCTACTAAACCG
TACTTCCTGTGTTAAAGAATGCGTTAAAACCCATGGTGTTTGTAAAAGTT
TGAACGTCAAAAAGATAAATGGTGGATTTAATTGCGAAATCCTGGATACT
GATAAATATAGTGAAGTGGATGGAGCACTGATCGCTGATTCGGAGACGAC
ACATTACGTCATAGCCAACCAATGctttaaaaatccatgtgaTGGAGGGT
GCAGTAGATGCAAACCAATCTACCATAACAACTCTTTCCACTGCGaaCAA
ATTTATTGCTCCTGTAAAGAAGTAACATCAAAACGCCTTCCATCCGGTTA
CTACaatttaaaatttggaaatatttccGCCAAAGGATTCTGTGATACTC
AAACTGACGGANATACCAATGTATCAACTATgctaacgaacaaaacttga
atgggccagcgaaaatttgtaaataattttgTGAAGAAAAATCAGATTAT
AAACGACACTATGAGATATTTATGTAtcaatttgtttttttgtatAGTGT
ACATTGGTACATTAATATTGTCAGTACTTGGAAGTAACTCCCCATTTACA
CCTGCTGTTAGATATCATGGTCCACACCAAAATGCATCGTTGAACTATAG
TTATATCAATATCAAATACTTGAAAAACCAGAAATTAAACGTCGTACCAT
TCGCTGTTTTCAATCTACTAAACCGTACTTCCTGTGTTAAAGAATGCGTT
AAAACCCATGGTGTTTGTAAAAGTTTGAACGTCAAAAAGATAAATGGTGG
ATTTAATTGCGAAATCCTGGATACTGATAAATATAGTGAAGTGGATGGAG
CACTGATCGCTGATTCGGAGACGACACATTACGTCATAGCCAACCAATGc
tttaaaaatccatgtgaTGGAGGGTGCAGTAGATGCAAACCAATCTACCA
TAACAACTCTTTCCACTGCGaaCAAATTTATTGCTCCTGTAAAGAAGTAA
CATCAAAACGCCTTCCATCCGGTTACTACaatttaaaatttggaaatatt
tccGCCAAAGGATTCTGTGATACTCAAACTGACGGANATACCAATGTATC
AACTATgctaacgaacaaaacttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061107-exon-scaffold_354-1491911889:965184..965975 | TCONS_00061107-exon-scaffold_354-1491911889:965184..965975 | Clytia hemisphaerica | exon |
| TCONS_00061107-exon-scaffold_354-1510915933:965184..965975 | TCONS_00061107-exon-scaffold_354-1510915933:965184..965975 | Clytia hemisphaerica | exon |
| TCONS_00061107-exon-scaffold_354-1575043694:965184..965975 | TCONS_00061107-exon-scaffold_354-1575043694:965184..965975 | Clytia hemisphaerica | exon |
| TCONS_00061107-exon-scaffold_354-1491911889:966368..966446 | TCONS_00061107-exon-scaffold_354-1491911889:966368..966446 | Clytia hemisphaerica | exon |
| TCONS_00061107-exon-scaffold_354-1510915933:966368..966446 | TCONS_00061107-exon-scaffold_354-1510915933:966368..966446 | Clytia hemisphaerica | exon |
| TCONS_00061107-exon-scaffold_354-1575043694:966368..966446 | TCONS_00061107-exon-scaffold_354-1575043694:966368..966446 | Clytia hemisphaerica | exon |
| TCONS_00061107-exon-scaffold_354-1491911889:967144..967383 | TCONS_00061107-exon-scaffold_354-1491911889:967144..967383 | Clytia hemisphaerica | exon |
| TCONS_00061107-exon-scaffold_354-1510915933:967144..967383 | TCONS_00061107-exon-scaffold_354-1510915933:967144..967383 | Clytia hemisphaerica | exon |
| TCONS_00061107-exon-scaffold_354-1575043694:967144..967383 | TCONS_00061107-exon-scaffold_354-1575043694:967144..967383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:965184..967383 + |
Blast
The following BLAST results are available for this feature:
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