|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061117 ID=TCONS_00061117|Name=TCONS_00061117|organism=Clytia hemisphaerica|type=transcript|length=2904bp
atccaaaattttttctctttcttaggAAAAATAATCCTAAactattctta
cggtattcttaggttaagatccaAATTGAACTTAAATTTAACATATAATA
CATACCTAAAgcataaaattgcatttttaagaaagttttgaatcttaTCC
AAGGTGGTTATATTCTTAGCACATccttataaaatatattcttataaaag
aaaaagcgtgtattcaaaaaaattgatctaAAATTGTTTAATTCTCCCAC
GATCCTGGATAAATGCCACGGTTGTTCAAACTGAATGCGCGCTAAATATG
GAATCAGATACTGCCATGGTGCGCCAACTGGTTAAGGCTGGGCCCACGGC
aacaacttttttatttaaaagtttttccccGGATATCGGCCTGACTGCCG
TTAGAAGACAGGAGACGGAGTTCATGGAGTAGATCAAGCGAGATCAAGAA
GGGagacaaaacaaaatgttaaGTCTAATTTCAATCGATAACTCATTATA
CAATATCCAAACATACAGTTCCATAAATTCAATAAAGTTCAACACGTCGA
GAAGGCGGGAACGCACGATCGACTCTGCCTGGCGAGTGCCTGGTACCTGG
ATCTCTTCTCTCATGTTGATACTCCCCGACGGGAGGACTTGTCAAGGTGA
GCTTCCATTCAATGGTTGGTATAACTACGAAAATGAATAATAAAATTGCG
GAACTATGTCCTCATGACAACACTCCCTCGACAATGGAGATTGGTCCCCA
ATCTGTagcgtttttatttttttgttctattttgGCATTGCTCGTAATGT
TCTTTTTGCGTACTCTGAACCAACAGTTAATTGCTAAATGGTTCTTGACA
AACGTAACAGAGTTTTTCATTGTCCATGGTTTTGGACTGGTTTGCTTTAT
TTTCGGACATTTCTCGATGTAAAGGGTTTTTTCGATTTCGACGATTTTCT
CTTTTCGATTGACAACTTCAGCTTTAGTCTTCTAACAGCCTTTTCGTACG
AATCAATCTCGTTCAGGAATAAatcattttgagttttttcgTCTAAACCA
GCCATAAAGAAATCTAACTTTTCATCTGGTTTAACATTCAGCTCGGTAAA
CATTTGTTCCATTTTCTCAACATATTCCTCTAACGTAGACTGACCCTGTT
TGATAGAATAGGGGTcctttttcaaaagagattcaTTGTCAAACTCAGTA
GTCAGACTTTCAATGATTTTATCATACGTATTCTTTCGCTCGTTGCTTAG
TCCTCGGAAATACCATTTTGGTCTTCGTCTTAAACGGGTTGGTAGTAGAG
TCAGCTTCTAGTTGTCACTCAATTCAGCAACGGAAGACAGTTCATTAAAA
TCAGCCAAGAAAGATCTAAAAGTCTTATCATACTCATCGAAAATCGGAAA
GTCATCGTGGTCAACGTTTAGGTGATTCATATGATCTCAATACAAATCGT
TTGTACGATAAACATCAATGTGATTGGCTAATAAACAAAAAGAGGAGCAG
TCGTGGACGTTTTCAATAGTCACATCGTGTTTGATACAAGGTTGGTTATC
TGAAGAGCGGCTATCGGTTTAAAAATCGATTGAATCGATGTTGGATGCTG
CTATAGACGTTTGGTCCCGCGTTTGGTTTCCACAAATAATGAAATCAGAG
CATCAATAATTAAGTTGCTTGGGTTTGATTTAACCCGTGGTTTCTATACA
ACGTTTGTTCATTATTGTTCATGATTCGGGGCGTGGCTGACGGTAATTTG
ACGGGTTTTGGTTCGTCGACAGGTATCAATAAATCATTAGTTATACATAT
TGAAAAGATAAATCAACAAAGTTCGAAATTTAATTGTCTCGTATGGATAA
gcaatcaaattttaatttgatgaaAGGCTGCTCGTAAGCAGGTGCACAAG
TTTCAGTGAAAGGTGCATACATTTGAAGAGTTTGAAATCAGCTacagttt
gttttcaattcacaaagattgtttgttattgttataATTTATGTCCATCG
TACCGTCGATAGTGCGACGACTAACTAGACGGGGAAATAATTGTCGTAGT
TTTTCAAAGTAGGTAATGTGGATTAATGCCTCAGCTGCCACTTGCCCAAT
GTCTGAACGTCCCGAGAGGATAATTGATTCGATAAATACGGTCGAAATAG
TCGGTTTCTCGTCGTACATCGCTGCCAGACGTTCATTTTAGATTCTTCAG
GCGATAATTTGAACTTCTAGGTTTGTCTGAGCTTGGAATTGTgcaaaaag
gtaaacacaacTAGGCAAGCTAGGACAAAATGCGGAGTTTGTATATCGCT
GAAGAAACTTGTAAGTAAACTTGAGGTATGgaactacaatcagtgacaaa
atacttggcacaaaagggaaattcaccggggtgttttgaaaccacaatcg
atttgtaagtgctcaaAAGTAGgctcgaagggtagagttttaactatgag
ttttaacgctagacttaaaaccttaggatctgaggattcaaaagttcaaa
aatgatccagtagggcttgaaatatagcctagaaactaATAaaccctccc
agatcgaaataatctatgaaatcaagttaaaggcctaaaaattgacatta
gccaaaagtgccaatatattatggcactgattgtatgTCAAACTTTTCTA
ACAAGAACCACACCCACCATAACGATTAAACAATTCTCCAACAATACAGA
AAGTGTTTCATATTCTATTCAAGTATTCAGCATTCAAACAATTCGGTTCG
ATTTCCAGCTGTTGTATGTTGTAAATGTTGAAATTGTcgttgtatttttt
taaaagttcggtttttgaatttttccattttttcataGTACCTCTCCCTT
ATAATCTCCATCAGGGTCATCCTCTAAAGCTGAGTCCCCAGATGTCAAGG
TGCG Run BLAST on NCBI transcript from alignment at scaffold_354:1091663..1094566+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061117 ID=TCONS_00061117|Name=TCONS_00061117|organism=Clytia hemisphaerica|type=transcript|length=2904bp|location=Sequence derived from alignment at scaffold_354:1091663..1094566+ (Clytia hemisphaerica)
atccaaaattttttctctttcttaggAAAAATAATCCTAAactattctta
cggtattcttaggttaagatccaAATTGAACTTAAATTTAACATATAATA
CATACCTAAAgcataaaattgcatttttaagaaagttttgaatcttaTCC
AAGGTGGTTATATTCTTAGCACATccttataaaatatattcttataaaag
aaaaagcgtgtattcaaaaaaattgatctaAAATTGTTTAATTCTCCCAC
GATCCTGGATAAATGCCACGGTTGTTCAAACTGAATGCGCGCTAAATATG
GAATCAGATACTGCCATGGTGCGCCAACTGGTTAAGGCTGGGCCCACGGC
aacaacttttttatttaaaagtttttccccGGATATCGGCCTGACTGCCG
TTAGAAGACAGGAGACGGAGTTCATGGAGTAGATCAAGCGAGATCAAGAA
GGGagacaaaacaaaatgttaaGTCTAATTTCAATCGATAACTCATTATA
CAATATCCAAACATACAGTTCCATAAATTCAATAAAGTTCAACACGTCGA
GAAGGCGGGAACGCACGATCGACTCTGCCTGGCGAGTGCCTGGTACCTGG
ATCTCTTCTCTCATGTTGATACTCCCCGACGGGAGGACTTGTCAAGGTGA
GCTTCCATTCAATGGTTGGTATAACTACGAAAATGAATAATAAAATTGCG
GAACTATGTCCTCATGACAACACTCCCTCGACAATGGAGATTGGTCCCCA
ATCTGTagcgtttttatttttttgttctattttgGCATTGCTCGTAATGT
TCTTTTTGCGTACTCTGAACCAACAGTTAATTGCTAAATGGTTCTTGACA
AACGTAACAGAGTTTTTCATTGTCCATGGTTTTGGACTGGTTTGCTTTAT
TTTCGGACATTTCTCGATGTAAAGGGTTTTTTCGATTTCGACGATTTTCT
CTTTTCGATTGACAACTTCAGCTTTAGTCTTCTAACAGCCTTTTCGTACG
AATCAATCTCGTTCAGGAATAAatcattttgagttttttcgTCTAAACCA
GCCATAAAGAAATCTAACTTTTCATCTGGTTTAACATTCAGCTCGGTAAA
CATTTGTTCCATTTTCTCAACATATTCCTCTAACGTAGACTGACCCTGTT
TGATAGAATAGGGGTcctttttcaaaagagattcaTTGTCAAACTCAGTA
GTCAGACTTTCAATGATTTTATCATACGTATTCTTTCGCTCGTTGCTTAG
TCCTCGGAAATACCATTTTGGTCTTCGTCTTAAACGGGTTGGTAGTAGAG
TCAGCTTCTAGTTGTCACTCAATTCAGCAACGGAAGACAGTTCATTAAAA
TCAGCCAAGAAAGATCTAAAAGTCTTATCATACTCATCGAAAATCGGAAA
GTCATCGTGGTCAACGTTTAGGTGATTCATATGATCTCAATACAAATCGT
TTGTACGATAAACATCAATGTGATTGGCTAATAAACAAAAAGAGGAGCAG
TCGTGGACGTTTTCAATAGTCACATCGTGTTTGATACAAGGTTGGTTATC
TGAAGAGCGGCTATCGGTTTAAAAATCGATTGAATCGATGTTGGATGCTG
CTATAGACGTTTGGTCCCGCGTTTGGTTTCCACAAATAATGAAATCAGAG
CATCAATAATTAAGTTGCTTGGGTTTGATTTAACCCGTGGTTTCTATACA
ACGTTTGTTCATTATTGTTCATGATTCGGGGCGTGGCTGACGGTAATTTG
ACGGGTTTTGGTTCGTCGACAGGTATCAATAAATCATTAGTTATACATAT
TGAAAAGATAAATCAACAAAGTTCGAAATTTAATTGTCTCGTATGGATAA
gcaatcaaattttaatttgatgaaAGGCTGCTCGTAAGCAGGTGCACAAG
TTTCAGTGAAAGGTGCATACATTTGAAGAGTTTGAAATCAGCTacagttt
gttttcaattcacaaagattgtttgttattgttataATTTATGTCCATCG
TACCGTCGATAGTGCGACGACTAACTAGACGGGGAAATAATTGTCGTAGT
TTTTCAAAGTAGGTAATGTGGATTAATGCCTCAGCTGCCACTTGCCCAAT
GTCTGAACGTCCCGAGAGGATAATTGATTCGATAAATACGGTCGAAATAG
TCGGTTTCTCGTCGTACATCGCTGCCAGACGTTCATTTTAGATTCTTCAG
GCGATAATTTGAACTTCTAGGTTTGTCTGAGCTTGGAATTGTgcaaaaag
gtaaacacaacTAGGCAAGCTAGGACAAAATGCGGAGTTTGTATATCGCT
GAAGAAACTTGTAAGTAAACTTGAGGTATGgaactacaatcagtgacaaa
atacttggcacaaaagggaaattcaccggggtgttttgaaaccacaatcg
atttgtaagtgctcaaAAGTAGgctcgaagggtagagttttaactatgag
ttttaacgctagacttaaaaccttaggatctgaggattcaaaagttcaaa
aatgatccagtagggcttgaaatatagcctagaaactaATAaaccctccc
agatcgaaataatctatgaaatcaagttaaaggcctaaaaattgacatta
gccaaaagtgccaatatattatggcactgattgtatgTCAAACTTTTCTA
ACAAGAACCACACCCACCATAACGATTAAACAATTCTCCAACAATACAGA
AAGTGTTTCATATTCTATTCAAGTATTCAGCATTCAAACAATTCGGTTCG
ATTTCCAGCTGTTGTATGTTGTAAATGTTGAAATTGTcgttgtatttttt
taaaagttcggtttttgaatttttccattttttcataGTACCTCTCCCTT
ATAATCTCCATCAGGGTCATCCTCTAAAGCTGAGTCCCCAGATGTCAAGG
TGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061117-exon-scaffold_354-1491911889:1091663..1094566 | TCONS_00061117-exon-scaffold_354-1491911889:1091663..1094566 | Clytia hemisphaerica | exon |
| TCONS_00061117-exon-scaffold_354-1510915933:1091663..1094566 | TCONS_00061117-exon-scaffold_354-1510915933:1091663..1094566 | Clytia hemisphaerica | exon |
| TCONS_00061117-exon-scaffold_354-1575043694:1091663..1094566 | TCONS_00061117-exon-scaffold_354-1575043694:1091663..1094566 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1091663..1094566 + |
Blast
The following BLAST results are available for this feature:
|
