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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061127 ID=TCONS_00061127|Name=TCONS_00061127|organism=Clytia hemisphaerica|type=transcript|length=676bp
ATAATATTAGCCTTTAATTTAATtataacatatttttttctaaaaatttc
agcattttaacatatttttttctaaaaatttcagCATTTCTCGTATAGAA
TAAAAACTATCATTATGGGCATCAAGGCAATTTTTGTTCTCTCTTGTCTT
GCAATGGCTTTTCAACAGACGCTAACTGCCCCGTCCAAGAGATgTGACAC
ATCAATGTGTGACCTCGTTTGCAGCCTGGATACTCATTCTGAGGATTACC
ATTGTGATGGAGAAGGAAATAGATACCGTGGTATTTGCAGTTTCTTACGT
GCCACCTGCCGAGAATGTTACGAATTGACGCTTTATCCATGTCAGGAGAT
AGGTTCAAGgtatgatgaagaagaaaagaagagtGGCAAGATATACCAAT
AACGCCATCCAGCATCAACTTTGTGATAGCAAACTCCTTCAACAAGTGTG
TTTGGAAATATACTACTTATCCGTATTTTTGGCACTATGTCATATGTGTT
TTTAATTTAAGAATTTATAACCAGTGTGTACATAATGAATATTGGGTCCT
GTCCAAGAAATAAATTTTTAGTGACTGTATTGCTTGACTTAAAACCAACC
AATACTGACTAGCTTTCTCGTCtctaaatgaaataaaatagaTCTTAATA
CCATTTGTGTTAGATTAGTAAGTAAA Run BLAST on NCBI transcript from alignment at scaffold_354:1159493..1162845+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061127 ID=TCONS_00061127|Name=TCONS_00061127|organism=Clytia hemisphaerica|type=transcript|length=3353bp|location=Sequence derived from alignment at scaffold_354:1159493..1162845+ (Clytia hemisphaerica)
ATAATATTAGCCTTTAATTTAATtataacatatttttttctaaaaatttc
agcattttaacatatttttttctaaaaatttcagCATTTCTCGTATAGAA
TAAAAACTATCATTATGGGCATCAAGGCAATTTTTGTTCTCTCTTGTCTT
GCAATGGCTTTTCAACAGACGCTAACTGCCCCGTCCAAGAGATGTAAGTA
AGATGTTACttgtgttttttataaaaacaaactatataagaacataaggc
tttgatggccaaaatattaagaacaaattaagaacattttaaggctttca
gactctaaaacaccaaaatgggcaaaaacacttaaaaatggtaaaatgag
aacatgttaagaacatttttaggcttaaaacttaaaaaaaacatccgaag
gtttcaaacattttggatgttcttataaaaaaacgtgtattttttctttg
ttttctgcCTTTAACAGGCCGCAAATTTTTCTAACTTTGTGGCTATGTTT
CCATCGTATACACTTATCATTATAAACCGTAGAGAAAGTTTTCCAGTCCT
ATTAGCAAAcgaaaaaattttgatcataatttttaaaatgttttagcCGA
TTGATACTTATCTTCAAAATTAATACTGAATTATGAACGATATAAAACTT
ATCTGCTTCCGGTTAATTTGAGAATGTGTGCTTGTTCATCCTCTAATTTT
TCtatgttatttattttgaaCGGTAAACTATACATTTTAAGCATGCTGCA
ATATGTATGTCATCCCCCTTACTGTGCCGCtgaggtttgaaaaatattcc
ctatatgggactcgttttttaaaaatttggccaaaatttacccaaaatCT
TTCACATTTTTCCCAAATTCCTTTTTAAAGGGCACCCTAtgagagactga
attttttttattttggtgtttttgggaCGTTACCCGGAACACACGGACGT
GAAATAACGTACCTTGATCAGCGCCACATCCCAGTAccatttttttccca
aatatACACCCCCCGGGATGACATCACAGGTTGACTTTTAAAAAAGTGAT
GCtatagtaagtctgcgaccgcagtcggaggcaacccgaaggctcctctt
tcgatagctatctacccggtAGAGGGAGGGTGCCATTCTTTCTCATTGGA
TTGCTCCTTTATCCTTCTCttgattgctgagcatcaagcagagaggcatc
aagtaccattttgggaatctttggtatgacctggcTGAGGGCTGAACCCA
CGACCTTGCGCACCGAAGCCGGATGccctaccttcatgctacggtcgctg
AAATAATATTTTGCACTATGGTTTCTGGTGATACTAACGGTACTGATCat
tatacatattttttttaggTGACACATCAATGTGTGACCTCGTTTGCAGC
CTGGATACTCATTCTGAGGATTACCATTGTGATGGAGAAGGAAATAGATA
CCGTGGTATTTGCAGTTTCTTACGTGCCACCTGCCGAGAATGTTACGAAT
TGACGCTTTATCCATGTCAGGAGATAGGTTCAAGGTAATATTTtgtttct
tcactttttttgcagggaataatataaaaaaacacccctttctcacagaa
aATAACAGACCAAAACTCGAAGGGGATTATtcacatgtttttttatggct
gtAGATTTAAATTCTGctgttttcgagccagaaaattgagtggggataga
aaaaaaagcacaatttttacagtgagaatttatctgattattttcagcgt
ggagaaaaattttccactggggatgaTATTTTAGCCAATTCTTCCAGCAG
TGGGAAGAGGTCTAAgagggtctgtgagaagtgggTGTTATAAAGGCCAt
tttaatagtgattcttttcttttaaagtaaactttaaagttgaaaagttt
cacATTATACCACGGAACCAAACTAAAAGGAAATTCCAAATCTATAAAAA
ATGTAGCAGCAGCCAGCGAAGAAAAAtcggcaaaattactgttcttGTCA
GAAGAAAGGATTTGAGAGCAATCTCTTACCCAGAGACCTTGCACCAATTT
TTGATAGACGTGATACGTGGGCGCTATACACCTTTTtcaccgtagtcgcg
cggtcaggctcgtgccactttattattatttaattatccccctaaactcg
atccaattttttacacctttttccattgtctataggtgcgaaaaactggg
tggttttagggtggtaaaacggacaaaaaatttCCACGCGttaattggtg
gctacggtcgaaaaggtaccctgagtatcagaggttaagttttcaaagaa
tatattaacctctgaagaccaataatagaaattttatcgcgcatgtgtca
atctaatcactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNgtagaaagaatcaaagatgaagagcaaa
tattaccttattaatgtctagcagactgtatcagtatgcagtttactatt
tacgaattccccataaacctccaagtgtaattgaagtgagtttatttcga
aagaaatcttttacatgatccccaaatgtataacagtaattactaaacta
ttgattatggaaatgtcactttaattgaatcgaaataatagacagacttt
atgttacgattctctatcactgactctttttacaaagcattgatggctta
gttgtgttttcaacgacgggaataaaaatatcaactttgaacttcatcca
agatcttggatggtcgtcatggttacttttgtgttcgttgattgcgcgct
gaatagaatctcgattggtcggcacagcttcgatatatgatttcgacctg
tgcttttcacggtatcaAAAAGGTGTATCAGATTCATAGAAAAGCGAGCT
AAaggggactgggttcgagtttgaacTGAACAAATGTACCAGGAATAATT
GAAAGCTTTGATAAATTTCCCATTAATCTATTTTAGgtatgatgaagaag
aaaagaagagtGGCAAGATATACCAATAACGCCATCCAGCATCAACTTTG
TGATAGCAAACTCCTTCAACAAGTGTGTTTGGAAATATACTACTTATCCG
TATTTTTGGCACTATGTCATATGTGTTTTTAATTTAAGAATTTATAACCA
GTGTGTACATAATGAATATTGGGTCCTGTCCAAGAAATAAATTTTTAGTG
ACTGTATTGCTTGACTTAAAACCAACCAATACTGACTAGCTTTCTCGTCt
ctaaatgaaataaaatagaTCTTAATACCATTTGTGTTAGATTAGTAAGT
AAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061127-exon-scaffold_354-1491911889:1159493..1159685 | TCONS_00061127-exon-scaffold_354-1491911889:1159493..1159685 | Clytia hemisphaerica | exon |
| TCONS_00061127-exon-scaffold_354-1510915933:1159493..1159685 | TCONS_00061127-exon-scaffold_354-1510915933:1159493..1159685 | Clytia hemisphaerica | exon |
| TCONS_00061127-exon-scaffold_354-1575043694:1159493..1159685 | TCONS_00061127-exon-scaffold_354-1575043694:1159493..1159685 | Clytia hemisphaerica | exon |
| TCONS_00061127-exon-scaffold_354-1491911889:1160861..1161026 | TCONS_00061127-exon-scaffold_354-1491911889:1160861..1161026 | Clytia hemisphaerica | exon |
| TCONS_00061127-exon-scaffold_354-1510915933:1160861..1161026 | TCONS_00061127-exon-scaffold_354-1510915933:1160861..1161026 | Clytia hemisphaerica | exon |
| TCONS_00061127-exon-scaffold_354-1575043694:1160861..1161026 | TCONS_00061127-exon-scaffold_354-1575043694:1160861..1161026 | Clytia hemisphaerica | exon |
| TCONS_00061127-exon-scaffold_354-1491911889:1162529..1162845 | TCONS_00061127-exon-scaffold_354-1491911889:1162529..1162845 | Clytia hemisphaerica | exon |
| TCONS_00061127-exon-scaffold_354-1510915933:1162529..1162845 | TCONS_00061127-exon-scaffold_354-1510915933:1162529..1162845 | Clytia hemisphaerica | exon |
| TCONS_00061127-exon-scaffold_354-1575043694:1162529..1162845 | TCONS_00061127-exon-scaffold_354-1575043694:1162529..1162845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1159493..1162845 + |
Blast
The following BLAST results are available for this feature:
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